Wall clock time and date at job start Mon Mar 30 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47051 * 2 1 4 4 N 1.46902 * 109.47494 * 239.99613 * 2 1 3 5 5 C 1.53003 * 109.47184 * 119.99292 * 2 1 3 6 6 H 1.09003 * 109.46878 * 54.74717 * 5 2 1 7 7 C 1.50699 * 109.46982 * 294.74386 * 5 2 1 8 8 C 1.33395 * 125.20159 * 109.06670 * 7 5 2 9 9 C 1.38419 * 114.91777 * 179.97438 * 8 7 5 10 10 C 1.33388 * 114.92342 * 359.97438 * 9 8 7 11 11 S 1.75878 * 109.59371 * 359.75733 * 10 9 8 12 12 N 1.46902 * 109.47101 * 174.74209 * 5 2 1 13 13 C 1.46905 * 110.99866 * 48.15657 * 12 5 2 14 14 C 1.46894 * 110.99801 * 172.10651 * 12 5 2 15 15 H 1.08997 * 109.47421 * 294.38523 * 14 12 5 16 16 C 1.53002 * 109.47113 * 54.38697 * 14 12 5 17 17 C 1.50701 * 109.46901 * 174.38409 * 14 12 5 18 18 H 1.07995 * 120.00124 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99901 * 179.97438 * 17 14 12 20 20 N 1.31518 * 120.00139 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00138 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.46915 * 90.00198 * 21 19 17 23 23 H 1.48495 * 109.47535 * 210.00247 * 21 19 17 24 24 H 1.48504 * 109.47245 * 330.00300 * 21 19 17 25 25 H 1.09000 * 109.46842 * 300.00172 * 1 2 3 26 26 H 1.09001 * 109.46993 * 60.00857 * 1 2 3 27 27 H 1.09001 * 109.46542 * 180.02562 * 1 2 3 28 28 H 1.00901 * 110.99565 * 60.83839 * 4 2 1 29 29 H 1.00899 * 110.99794 * 184.79134 * 4 2 1 30 30 H 1.08002 * 122.53609 * 359.97438 * 8 7 5 31 31 H 1.08001 * 122.53379 * 179.97438 * 9 8 7 32 32 H 1.08006 * 125.20238 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.46763 * 192.34831 * 13 12 5 34 34 H 1.09005 * 109.46735 * 312.34789 * 13 12 5 35 35 H 1.08999 * 109.47386 * 72.34479 * 13 12 5 36 36 H 1.08999 * 109.46951 * 294.88587 * 16 14 12 37 37 H 1.09004 * 109.47030 * 54.88761 * 16 14 12 38 38 H 1.08999 * 109.46736 * 174.88942 * 16 14 12 39 39 H 0.96995 * 119.99752 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0401 -0.7211 1.2493 6 1 1.6019 -1.7180 1.2977 7 6 1.6468 0.0606 2.4762 8 6 0.7228 -0.3131 3.3627 9 6 0.5318 0.5683 4.4128 10 6 1.3010 1.6575 4.3794 11 16 2.3421 1.6011 2.9630 12 7 3.5036 -0.8320 1.1876 13 6 4.1151 0.4580 0.8410 14 6 4.0461 -1.3492 2.4509 15 1 3.8676 -0.6257 3.2463 16 6 3.3570 -2.6702 2.7990 17 6 5.5282 -1.5792 2.3043 18 1 6.0182 -1.3624 1.3666 19 6 6.2589 -2.0654 3.3677 20 7 5.6623 -2.3290 4.5097 21 14 8.0961 -2.3499 3.1863 22 1 8.8282 -1.1157 3.5686 23 1 8.5139 -3.4672 4.0707 24 1 8.4071 -2.6928 1.7752 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 1.7076 -0.2272 -2.0384 29 1 3.0253 -0.7747 -1.1842 30 1 0.1659 -1.2337 3.2682 31 1 -0.1858 0.3876 5.1995 32 1 1.2889 2.4509 5.1121 33 1 5.1643 0.3062 0.5876 34 1 3.5936 0.8893 -0.0135 35 1 4.0410 1.1355 1.6916 36 1 2.3001 -2.4882 2.9940 37 1 3.4583 -3.3638 1.9643 38 1 3.8216 -3.0994 3.6866 39 1 6.1763 -2.6714 5.2577 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220914065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:21 Heat of formation + Delta-G solvation = 49.007189 kcal Electronic energy + Delta-G solvation = -19694.765741 eV Core-core repulsion = 16957.514133 eV Total energy + Delta-G solvation = -2737.251608 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.00250 -36.66260 -34.84432 -32.48251 -30.25126 -29.15584 -28.13838 -26.41792 -24.72085 -23.67031 -22.88604 -20.31055 -19.31600 -18.79127 -16.64661 -16.21309 -15.68128 -15.25748 -14.73605 -14.65697 -14.43523 -13.80278 -13.21416 -12.81812 -12.45623 -12.31512 -12.21259 -12.04353 -11.63918 -11.60706 -11.43451 -11.34047 -11.02746 -10.91760 -10.61343 -10.47954 -10.22918 -10.07108 -9.91734 -9.74836 -8.90676 -8.44747 -8.34574 -8.11796 -7.95953 -7.20837 -5.96789 -4.01562 1.48274 2.11979 2.49715 3.21246 3.31552 3.38473 3.42067 4.41936 4.70886 4.91532 5.19884 5.34222 5.39538 5.46167 5.52640 5.59815 5.87822 5.90385 5.96088 6.02140 6.11866 6.24064 6.31353 6.44679 6.59027 6.64145 6.75172 6.90584 6.93325 7.11080 7.16226 7.45700 7.55295 7.71796 7.84368 7.85775 8.19568 8.34895 8.58320 9.03840 9.62639 11.09211 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.007780 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.298483 B = 3598.032953 C = 4289.566330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.095 3.905 3 H 0.033 0.967 4 N -0.839 5.839 5 C 0.155 3.845 6 H 0.103 0.897 7 C -0.171 4.171 8 C -0.143 4.143 9 C -0.132 4.132 10 C -0.243 4.243 11 S 0.110 5.890 12 N -0.518 5.518 13 C 0.021 3.979 14 C 0.211 3.789 15 H 0.014 0.986 16 C -0.135 4.135 17 C -0.501 4.501 18 H 0.061 0.939 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.894 3.106 22 H -0.283 1.283 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.329 0.671 29 H 0.356 0.644 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.152 0.848 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.027 0.973 36 H 0.009 0.991 37 H 0.031 0.969 38 H 0.086 0.914 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 7.180 -5.007 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.017 4.017 3 H 0.051 0.949 4 N -0.371 5.371 5 C 0.043 3.957 6 H 0.120 0.880 7 C -0.291 4.291 8 C -0.174 4.174 9 C -0.163 4.163 10 C -0.379 4.379 11 S 0.374 5.626 12 N -0.240 5.240 13 C -0.129 4.129 14 C 0.105 3.895 15 H 0.031 0.969 16 C -0.194 4.194 17 C -0.540 4.540 18 H 0.079 0.921 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.722 3.278 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.172 0.828 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.170 0.830 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.783 7.100 -5.496 12.560 hybrid contribution 0.276 0.350 1.339 1.411 sum -8.507 7.450 -4.158 12.048 Atomic orbital electron populations 1.21799 0.94760 1.02392 1.01110 1.21385 0.94942 0.94710 0.90631 0.94949 1.58606 1.18785 1.57020 1.02686 1.20583 0.90869 0.97171 0.87106 0.87955 1.25552 1.01060 0.98851 1.03615 1.19996 1.00912 1.01340 0.95140 1.20027 1.01763 0.94605 0.99863 1.25811 1.03043 1.03861 1.05146 1.84415 1.39016 1.19116 1.20050 1.62537 1.00549 1.23678 1.37263 1.22599 1.01116 0.90956 0.98183 1.19357 0.93844 0.92652 0.83609 0.96867 1.21852 0.96021 0.99203 1.02281 1.21108 0.91969 1.42926 0.97951 0.92128 1.24906 0.98324 0.95687 0.95285 1.69900 1.35393 1.45276 1.02434 0.86569 0.85580 0.77678 0.77986 1.20913 1.21329 1.19896 0.92244 0.93221 0.91867 0.85909 0.82756 0.84965 0.85299 0.82997 0.90399 0.93571 0.95555 0.97166 0.94948 0.89569 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.31 37.16 0.35 -1.49 16 2 C 0.10 1.40 2.25 -67.71 -0.15 1.25 16 3 H 0.03 0.49 6.40 -51.93 -0.33 0.16 16 4 N -0.84 -11.81 9.18 -4.66 -0.04 -11.85 16 5 C 0.15 2.75 1.57 -68.86 -0.11 2.64 16 6 H 0.10 1.97 6.78 -51.93 -0.35 1.62 16 7 C -0.17 -3.01 2.49 -36.00 -0.09 -3.10 16 8 C -0.14 -2.40 9.22 -41.21 -0.38 -2.78 16 9 C -0.13 -2.06 10.18 -41.21 -0.42 -2.48 16 10 C -0.24 -3.83 11.23 29.04 0.33 -3.50 16 11 S 0.11 1.89 18.89 -107.50 -2.03 -0.14 16 12 N -0.52 -10.58 3.98 -229.68 -0.91 -11.49 16 13 C 0.02 0.39 7.72 60.07 0.46 0.85 16 14 C 0.21 5.19 1.52 -68.87 -0.10 5.09 16 15 H 0.01 0.37 6.34 -51.93 -0.33 0.04 16 16 C -0.14 -3.33 8.42 37.16 0.31 -3.02 16 17 C -0.50 -13.55 8.03 -34.44 -0.28 -13.82 16 18 H 0.06 1.63 6.81 -52.49 -0.36 1.27 16 19 C 0.06 1.63 5.29 -17.82 -0.09 1.53 16 20 N -0.89 -25.51 11.29 55.43 0.63 -24.88 16 21 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.78 7.25 -51.93 -0.38 0.40 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.33 3.78 9.04 -39.29 -0.36 3.43 16 29 H 0.36 5.44 7.15 -39.29 -0.28 5.15 16 30 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.15 2.01 8.06 -52.48 -0.42 1.58 16 33 H 0.08 1.53 6.86 -51.93 -0.36 1.18 16 34 H 0.05 0.73 5.03 -51.93 -0.26 0.47 16 35 H 0.03 0.52 4.73 -34.32 -0.16 0.36 16 36 H 0.01 0.21 5.86 -51.93 -0.30 -0.09 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -28.52 306.56 -8.39 -36.91 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.45 Total: 9.30 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -0.18 Total: -18.83 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.33 Total: -48.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.03 Total: -0.14 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.52 -8.39 -36.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220914065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.914 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds