Wall clock time and date at job start Mon Mar 30 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47051 * 2 1 4 4 N 1.46902 * 109.47494 * 239.99613 * 2 1 3 5 5 C 1.53003 * 109.47184 * 119.99292 * 2 1 3 6 6 H 1.09003 * 109.46878 * 54.74717 * 5 2 1 7 7 C 1.50699 * 109.46982 * 294.74386 * 5 2 1 8 8 C 1.33395 * 125.20159 * 109.06670 * 7 5 2 9 9 C 1.38419 * 114.91777 * 179.97438 * 8 7 5 10 10 C 1.33388 * 114.92342 * 359.97438 * 9 8 7 11 11 S 1.75878 * 109.59371 * 359.75733 * 10 9 8 12 12 N 1.46902 * 109.47101 * 174.74209 * 5 2 1 13 13 C 1.46905 * 110.99866 * 48.15657 * 12 5 2 14 14 C 1.46894 * 110.99801 * 172.10651 * 12 5 2 15 15 H 1.08997 * 109.47421 * 294.38523 * 14 12 5 16 16 C 1.53002 * 109.47113 * 54.38697 * 14 12 5 17 17 C 1.50701 * 109.46901 * 174.38409 * 14 12 5 18 18 H 1.07995 * 120.00124 * 0.02562 * 17 14 12 19 19 C 1.37877 * 119.99901 * 179.97438 * 17 14 12 20 20 N 1.31518 * 120.00139 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00138 * 180.02562 * 19 17 14 22 22 H 1.48506 * 109.46915 * 90.00198 * 21 19 17 23 23 H 1.48495 * 109.47535 * 210.00247 * 21 19 17 24 24 H 1.48504 * 109.47245 * 330.00300 * 21 19 17 25 25 H 1.09000 * 109.46842 * 300.00172 * 1 2 3 26 26 H 1.09001 * 109.46993 * 60.00857 * 1 2 3 27 27 H 1.09001 * 109.46542 * 180.02562 * 1 2 3 28 28 H 1.00901 * 110.99565 * 60.83839 * 4 2 1 29 29 H 1.00899 * 110.99794 * 184.79134 * 4 2 1 30 30 H 1.08002 * 122.53609 * 359.97438 * 8 7 5 31 31 H 1.08001 * 122.53379 * 179.97438 * 9 8 7 32 32 H 1.08006 * 125.20238 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.46763 * 192.34831 * 13 12 5 34 34 H 1.09005 * 109.46735 * 312.34789 * 13 12 5 35 35 H 1.08999 * 109.47386 * 72.34479 * 13 12 5 36 36 H 1.08999 * 109.46951 * 294.88587 * 16 14 12 37 37 H 1.09004 * 109.47030 * 54.88761 * 16 14 12 38 38 H 1.08999 * 109.46736 * 174.88942 * 16 14 12 39 39 H 0.96995 * 119.99752 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0401 -0.7211 1.2493 6 1 1.6019 -1.7180 1.2977 7 6 1.6468 0.0606 2.4762 8 6 0.7228 -0.3131 3.3627 9 6 0.5318 0.5683 4.4128 10 6 1.3010 1.6575 4.3794 11 16 2.3421 1.6011 2.9630 12 7 3.5036 -0.8320 1.1876 13 6 4.1151 0.4580 0.8410 14 6 4.0461 -1.3492 2.4509 15 1 3.8676 -0.6257 3.2463 16 6 3.3570 -2.6702 2.7990 17 6 5.5282 -1.5792 2.3043 18 1 6.0182 -1.3624 1.3666 19 6 6.2589 -2.0654 3.3677 20 7 5.6623 -2.3290 4.5097 21 14 8.0961 -2.3499 3.1863 22 1 8.8282 -1.1157 3.5686 23 1 8.5139 -3.4672 4.0707 24 1 8.4071 -2.6928 1.7752 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 1.7076 -0.2272 -2.0384 29 1 3.0253 -0.7747 -1.1842 30 1 0.1659 -1.2337 3.2682 31 1 -0.1858 0.3876 5.1995 32 1 1.2889 2.4509 5.1121 33 1 5.1643 0.3062 0.5876 34 1 3.5936 0.8893 -0.0135 35 1 4.0410 1.1355 1.6916 36 1 2.3001 -2.4882 2.9940 37 1 3.4583 -3.3638 1.9643 38 1 3.8216 -3.0994 3.6866 39 1 6.1763 -2.6714 5.2577 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220914065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:20 Heat of formation + Delta-G solvation = 29.993638 kcal Electronic energy + Delta-G solvation = -19695.590231 eV Core-core repulsion = 16957.514133 eV Total energy + Delta-G solvation = -2738.076098 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44178 -37.98483 -36.38444 -34.33698 -31.56734 -31.02934 -29.28035 -27.97412 -26.60843 -25.22485 -24.21134 -21.91470 -20.71513 -20.16729 -18.37095 -17.79130 -17.13132 -16.67631 -16.34604 -16.09038 -15.78694 -15.42034 -14.85896 -14.26172 -14.03627 -13.62689 -13.57090 -13.39126 -13.12534 -13.04330 -12.87009 -12.77245 -12.73230 -12.46240 -12.33342 -12.12690 -12.05358 -11.96642 -11.47049 -11.30377 -10.88396 -10.47351 -9.59565 -9.40496 -9.28498 -8.83892 -8.06280 -6.17252 0.19500 0.81840 1.21189 1.41379 1.43128 1.52901 1.94386 2.43836 3.21157 3.32875 3.57927 3.99866 4.13798 4.27103 4.28036 4.31844 4.59653 4.65126 4.70288 4.77466 4.84028 4.95084 5.01541 5.07715 5.09599 5.10610 5.26498 5.29283 5.36763 5.46504 5.56474 5.67171 5.77128 5.83358 6.30055 6.38104 6.40041 6.73545 6.78361 6.97021 7.50845 8.98549 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019328 B = 0.007780 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.298483 B = 3598.032953 C = 4289.566330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.102 3.898 3 H 0.033 0.967 4 N -0.842 5.842 5 C 0.157 3.843 6 H 0.086 0.914 7 C -0.187 4.187 8 C -0.149 4.149 9 C -0.138 4.138 10 C -0.241 4.241 11 S 0.085 5.915 12 N -0.522 5.522 13 C 0.024 3.976 14 C 0.221 3.779 15 H -0.013 1.013 16 C -0.123 4.123 17 C -0.513 4.513 18 H 0.057 0.943 19 C 0.012 3.988 20 N -0.918 5.918 21 Si 0.954 3.046 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.269 1.269 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.346 0.654 29 H 0.350 0.650 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.021 0.979 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.057 0.943 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 7.897 -5.617 14.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.010 4.010 3 H 0.051 0.949 4 N -0.376 5.376 5 C 0.046 3.954 6 H 0.104 0.896 7 C -0.306 4.306 8 C -0.180 4.180 9 C -0.169 4.169 10 C -0.376 4.376 11 S 0.349 5.651 12 N -0.244 5.244 13 C -0.125 4.125 14 C 0.114 3.886 15 H 0.005 0.995 16 C -0.181 4.181 17 C -0.552 4.552 18 H 0.075 0.925 19 C -0.187 4.187 20 N -0.559 5.559 21 Si 0.780 3.220 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.194 1.194 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.160 0.840 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.174 0.826 32 H 0.195 0.805 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.039 0.961 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.504 7.829 -6.137 13.758 hybrid contribution 0.422 0.147 1.535 1.598 sum -9.082 7.976 -4.602 12.933 Atomic orbital electron populations 1.21733 0.93088 1.02463 1.02057 1.21308 0.96151 0.94074 0.89437 0.94883 1.58576 1.18285 1.57405 1.03289 1.20537 0.88932 0.96914 0.89019 0.89640 1.25496 1.01860 0.99325 1.03947 1.20285 1.00687 1.01854 0.95178 1.20333 1.02225 0.94156 1.00152 1.26129 1.02107 1.04658 1.04694 1.84409 1.40051 1.19187 1.21466 1.62380 1.02369 1.24792 1.34842 1.22574 1.00593 0.90233 0.99094 1.19040 0.92923 0.91920 0.84698 0.99528 1.21663 0.96748 0.99064 1.00602 1.21427 0.93539 1.42517 0.97715 0.92527 1.25639 1.02319 0.95644 0.95077 1.70030 1.36750 1.46069 1.03010 0.85622 0.80824 0.77540 0.78013 1.20429 1.21203 1.19355 0.92468 0.91092 0.92211 0.83996 0.83516 0.84066 0.82601 0.80491 0.91827 0.90646 0.96091 0.95553 0.95497 0.92410 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.31 71.98 0.67 -2.53 16 2 C 0.10 2.85 2.25 44.92 0.10 2.95 16 3 H 0.03 0.93 6.40 -2.39 -0.02 0.92 16 4 N -0.84 -22.22 9.18 -168.66 -1.55 -23.77 16 5 C 0.16 5.50 1.57 44.17 0.07 5.57 16 6 H 0.09 3.26 6.78 -2.39 -0.02 3.24 16 7 C -0.19 -6.44 2.49 24.59 0.06 -6.38 16 8 C -0.15 -4.83 9.22 21.22 0.20 -4.63 16 9 C -0.14 -4.06 10.18 21.21 0.22 -3.84 16 10 C -0.24 -7.14 11.23 66.72 0.75 -6.39 16 11 S 0.09 2.86 18.89 -56.49 -1.07 1.80 16 12 N -0.52 -21.25 3.98 -880.57 -3.50 -24.75 16 13 C 0.02 0.89 7.72 127.69 0.99 1.88 16 14 C 0.22 11.00 1.52 44.17 0.07 11.07 16 15 H -0.01 -0.70 6.34 -2.39 -0.02 -0.72 16 16 C -0.12 -6.12 8.42 71.98 0.61 -5.51 16 17 C -0.51 -28.05 8.03 25.60 0.21 -27.84 16 18 H 0.06 3.07 6.81 -2.91 -0.02 3.05 16 19 C 0.01 0.64 5.29 84.65 0.45 1.09 16 20 N -0.92 -53.35 11.29 21.45 0.24 -53.11 16 21 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H 0.06 1.38 7.25 -2.39 -0.02 1.36 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.35 7.11 9.04 -89.69 -0.81 6.30 16 29 H 0.35 10.19 7.15 -89.69 -0.64 9.54 16 30 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 31 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 32 H 0.18 4.23 8.06 -2.91 -0.02 4.20 16 33 H 0.06 2.51 6.86 -2.39 -0.02 2.49 16 34 H 0.08 2.30 5.03 -2.38 -0.01 2.29 16 35 H 0.02 0.82 4.73 -13.59 -0.06 0.76 16 36 H 0.03 1.17 5.86 -2.39 -0.01 1.16 16 37 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 3.22 5.95 -2.39 -0.01 3.20 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -60.71 306.56 0.09 -60.62 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.44 Total: 27.67 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 4.38 Total: -34.57 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -4.81 Total: -101.63 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.07 Total: 1.80 kcal Total: -60.71 0.09 -60.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220914065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.615 kcal (2) G-P(sol) polarization free energy of solvation -60.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds