Wall clock time and date at job start Mon Mar 30 2020 06:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47280 * 2 1 4 4 N 1.46901 * 109.47105 * 119.99775 * 2 1 3 5 5 C 1.52994 * 109.47396 * 239.99875 * 2 1 3 6 6 H 1.08997 * 109.47470 * 178.12675 * 5 2 1 7 7 C 1.50703 * 109.46970 * 298.12552 * 5 2 1 8 8 C 1.38425 * 122.53994 * 257.44807 * 7 5 2 9 9 C 1.33386 * 114.92271 * 179.97438 * 8 7 5 10 10 S 1.75880 * 109.59367 * 359.97438 * 9 8 7 11 11 C 1.33387 * 122.54173 * 77.16098 * 7 5 2 12 12 N 1.46897 * 109.47411 * 58.12239 * 5 2 1 13 13 C 1.46903 * 110.99759 * 40.46945 * 12 5 2 14 14 C 1.46899 * 111.00387 * 164.42295 * 12 5 2 15 15 H 1.08999 * 109.47117 * 306.21818 * 14 12 5 16 16 C 1.52998 * 109.47163 * 66.21971 * 14 12 5 17 17 C 1.50703 * 109.47367 * 186.21942 * 14 12 5 18 18 H 1.08003 * 120.00069 * 0.02562 * 17 14 12 19 19 C 1.37874 * 120.00014 * 180.27377 * 17 14 12 20 20 N 1.31514 * 119.99958 * 359.72729 * 19 17 14 21 21 Si 1.86799 * 119.99935 * 179.72402 * 19 17 14 22 22 H 1.48503 * 109.46944 * 60.00241 * 21 19 17 23 23 H 1.48503 * 109.47208 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47119 * 300.00239 * 21 19 17 25 25 H 1.08995 * 109.47195 * 186.09967 * 1 2 3 26 26 H 1.09001 * 109.47026 * 306.10777 * 1 2 3 27 27 H 1.09006 * 109.46943 * 66.10591 * 1 2 3 28 28 H 1.00899 * 110.99975 * 296.04662 * 4 2 1 29 29 H 1.00900 * 110.99795 * 59.99651 * 4 2 1 30 30 H 1.07999 * 122.53589 * 359.95573 * 8 7 5 31 31 H 1.07999 * 125.20065 * 179.97438 * 9 8 7 32 32 H 1.08001 * 125.20111 * 0.02562 * 11 7 5 33 33 H 1.08999 * 109.47186 * 178.77949 * 13 12 5 34 34 H 1.08999 * 109.47062 * 298.77053 * 13 12 5 35 35 H 1.08998 * 109.47093 * 58.77406 * 13 12 5 36 36 H 1.09003 * 109.47151 * 50.61860 * 16 14 12 37 37 H 1.09000 * 109.47249 * 170.61619 * 16 14 12 38 38 H 1.09005 * 109.47345 * 290.61872 * 16 14 12 39 39 H 0.97001 * 120.00039 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0400 -0.7212 -1.2492 6 1 3.1295 -0.6922 -1.2661 7 6 1.5760 -2.1549 -1.2261 8 6 2.4111 -3.2022 -0.8772 9 6 1.8426 -4.4085 -0.9076 10 16 0.1606 -4.2556 -1.3984 11 6 0.3280 -2.5101 -1.5349 12 7 1.5137 -0.0555 -2.4482 13 6 1.5367 1.4050 -2.2923 14 6 2.2544 -0.4686 -3.6477 15 1 3.3206 -0.3058 -3.4903 16 6 1.9996 -1.9527 -3.9185 17 6 1.7911 0.3444 -4.8290 18 1 1.0235 1.0933 -4.7015 19 6 2.3435 0.1285 -6.0737 20 7 3.2786 -0.7832 -6.2289 21 14 1.7637 1.1308 -7.5395 22 1 2.0111 2.5723 -7.2823 23 1 2.5082 0.7091 -8.7532 24 1 0.3105 0.9075 -7.7482 25 1 -0.3633 -1.0218 0.1092 26 1 -0.3633 0.6056 0.8303 27 1 -0.3633 0.4163 -0.9396 28 1 1.7502 -0.1989 2.0372 29 1 1.6960 -1.6479 1.2228 30 1 3.4447 -3.0539 -0.6015 31 1 2.3392 -5.3370 -0.6675 32 1 -0.4590 -1.8301 -1.8259 33 1 1.1621 1.8735 -3.2024 34 1 0.9057 1.6905 -1.4506 35 1 2.5591 1.7347 -2.1082 36 1 0.9266 -2.1446 -3.9105 37 1 2.4091 -2.2198 -4.8927 38 1 2.4815 -2.5511 -3.1453 39 1 3.6675 -0.9349 -7.1045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220914156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:47 Heat of formation + Delta-G solvation = 55.412827 kcal Electronic energy + Delta-G solvation = -19771.522860 eV Core-core repulsion = 17034.549021 eV Total energy + Delta-G solvation = -2736.973839 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52178 -36.13684 -34.97014 -32.50075 -29.60238 -29.39611 -27.77222 -26.92797 -24.87634 -23.69451 -22.72717 -20.34957 -19.31968 -17.97390 -17.17676 -16.42444 -15.81438 -15.51676 -14.54307 -14.31861 -13.73670 -13.49287 -13.33181 -12.83020 -12.59875 -12.51984 -12.28193 -12.10360 -11.89211 -11.43173 -11.40678 -11.01964 -10.93248 -10.80876 -10.66281 -10.37674 -10.21636 -10.02071 -9.89448 -9.67898 -8.84327 -8.55099 -8.38737 -8.19582 -7.75131 -7.18107 -5.97438 -4.03621 1.52029 2.13647 2.45204 3.22628 3.32092 3.36971 3.39083 4.39897 4.66184 5.11719 5.17873 5.32361 5.47215 5.49078 5.61050 5.73478 5.90890 6.02419 6.05305 6.13320 6.29534 6.31330 6.40571 6.49187 6.60560 6.79969 6.86779 6.99010 7.06339 7.21350 7.26196 7.37996 7.56695 7.62862 7.79656 7.86315 8.25955 8.39677 8.62991 9.02838 9.61108 11.07895 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.007140 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.583848 B = 3920.582825 C = 4698.145287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.093 3.907 3 H 0.082 0.918 4 N -0.843 5.843 5 C 0.149 3.851 6 H 0.047 0.953 7 C -0.071 4.071 8 C -0.113 4.113 9 C -0.223 4.223 10 S 0.046 5.954 11 C -0.171 4.171 12 N -0.527 5.527 13 C 0.026 3.974 14 C 0.216 3.784 15 H -0.004 1.004 16 C -0.130 4.130 17 C -0.507 4.507 18 H 0.063 0.937 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.894 3.106 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.334 0.666 29 H 0.340 0.660 30 H 0.134 0.866 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.011 0.989 36 H 0.031 0.969 37 H 0.079 0.921 38 H 0.017 0.983 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 -3.060 12.694 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.019 4.019 3 H 0.100 0.900 4 N -0.372 5.372 5 C 0.037 3.963 6 H 0.065 0.935 7 C -0.083 4.083 8 C -0.145 4.145 9 C -0.358 4.358 10 S 0.308 5.692 11 C -0.306 4.306 12 N -0.252 5.252 13 C -0.123 4.123 14 C 0.111 3.889 15 H 0.014 0.986 16 C -0.188 4.188 17 C -0.545 4.545 18 H 0.081 0.919 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.722 3.278 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.173 0.827 32 H 0.183 0.817 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.098 0.902 38 H 0.036 0.964 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.407 -4.187 11.950 13.769 hybrid contribution 0.799 1.543 -0.472 1.800 sum -4.608 -2.644 11.478 12.648 Atomic orbital electron populations 1.22732 0.97384 1.01909 1.02518 1.21510 0.92941 0.97650 0.89824 0.90043 1.58882 1.67556 1.06681 1.04104 1.20154 0.96656 0.89213 0.90293 0.93530 1.18630 0.92613 0.95954 1.01107 1.20074 1.00908 0.91452 1.02028 1.25323 0.97625 1.01466 1.11423 1.84053 1.10769 1.05498 1.68839 1.25391 1.01707 0.95542 1.07956 1.62229 1.55661 1.05397 1.01961 1.22433 0.98478 0.89609 1.01737 1.19233 0.90744 0.93476 0.85490 0.98615 1.22001 0.98722 0.96479 1.01574 1.21190 1.21433 1.19421 0.92502 0.91862 1.24923 0.95114 0.95402 0.98733 1.69899 1.26797 1.32681 1.23503 0.86633 0.78795 0.80374 0.82002 1.20396 1.21390 1.20308 0.92329 0.94107 0.90082 0.85394 0.84724 0.84810 0.82705 0.81703 0.90106 0.93215 0.97025 0.95008 0.90246 0.96411 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 7.74 37.16 0.29 -2.20 16 2 C 0.09 1.34 2.67 -67.72 -0.18 1.16 16 3 H 0.08 1.21 6.55 -51.93 -0.34 0.87 16 4 N -0.84 -10.69 9.18 -4.67 -0.04 -10.73 16 5 C 0.15 2.64 1.92 -68.87 -0.13 2.51 16 6 H 0.05 0.94 7.80 -51.93 -0.41 0.54 16 7 C -0.07 -1.18 1.18 -106.25 -0.13 -1.31 16 8 C -0.11 -1.77 8.39 -41.21 -0.35 -2.11 16 9 C -0.22 -3.17 11.23 29.04 0.33 -2.84 16 10 S 0.05 0.67 23.34 -107.50 -2.51 -1.84 16 11 C -0.17 -2.78 6.51 29.04 0.19 -2.59 16 12 N -0.53 -10.71 3.54 -229.69 -0.81 -11.53 16 13 C 0.03 0.48 7.80 60.07 0.47 0.95 16 14 C 0.22 5.39 2.06 -68.87 -0.14 5.24 16 15 H 0.00 -0.10 7.95 -51.93 -0.41 -0.52 16 16 C -0.13 -3.19 7.63 37.16 0.28 -2.90 16 17 C -0.51 -13.64 7.89 -34.44 -0.27 -13.91 16 18 H 0.06 1.67 5.97 -52.48 -0.31 1.36 16 19 C 0.06 1.64 5.27 -17.82 -0.09 1.55 16 20 N -0.89 -25.51 11.29 55.43 0.63 -24.89 16 21 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.06 0.78 5.98 -51.93 -0.31 0.47 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.21 6.08 -51.93 -0.32 0.89 16 28 H 0.33 3.52 9.07 -39.29 -0.36 3.16 16 29 H 0.34 4.29 7.54 -39.29 -0.30 4.00 16 30 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 31 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.17 2.79 7.31 -52.49 -0.38 2.41 16 33 H 0.08 1.65 5.71 -51.93 -0.30 1.35 16 34 H 0.05 0.79 4.96 -51.93 -0.26 0.53 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.03 0.76 6.89 -51.93 -0.36 0.40 16 37 H 0.08 2.20 5.86 -51.93 -0.30 1.89 16 38 H 0.02 0.40 5.03 -51.93 -0.26 0.14 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -27.85 301.92 -8.39 -36.24 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.44 Total: 8.39 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 0.26 Total: -16.46 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.23 Total: -47.15 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.51 Total: -1.84 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.85 -8.39 -36.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220914156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.653 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds