Wall clock time and date at job start Mon Mar 30 2020 06:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47280 * 2 1 4 4 N 1.46901 * 109.47105 * 119.99775 * 2 1 3 5 5 C 1.52994 * 109.47396 * 239.99875 * 2 1 3 6 6 H 1.08997 * 109.47470 * 178.12675 * 5 2 1 7 7 C 1.50703 * 109.46970 * 298.12552 * 5 2 1 8 8 C 1.38425 * 122.53994 * 257.44807 * 7 5 2 9 9 C 1.33386 * 114.92271 * 179.97438 * 8 7 5 10 10 S 1.75880 * 109.59367 * 359.97438 * 9 8 7 11 11 C 1.33387 * 122.54173 * 77.16098 * 7 5 2 12 12 N 1.46897 * 109.47411 * 58.12239 * 5 2 1 13 13 C 1.46903 * 110.99759 * 40.46945 * 12 5 2 14 14 C 1.46899 * 111.00387 * 164.42295 * 12 5 2 15 15 H 1.08999 * 109.47117 * 306.21818 * 14 12 5 16 16 C 1.52998 * 109.47163 * 66.21971 * 14 12 5 17 17 C 1.50703 * 109.47367 * 186.21942 * 14 12 5 18 18 H 1.08003 * 120.00069 * 0.02562 * 17 14 12 19 19 C 1.37874 * 120.00014 * 180.27377 * 17 14 12 20 20 N 1.31514 * 119.99958 * 359.72729 * 19 17 14 21 21 Si 1.86799 * 119.99935 * 179.72402 * 19 17 14 22 22 H 1.48503 * 109.46944 * 60.00241 * 21 19 17 23 23 H 1.48503 * 109.47208 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47119 * 300.00239 * 21 19 17 25 25 H 1.08995 * 109.47195 * 186.09967 * 1 2 3 26 26 H 1.09001 * 109.47026 * 306.10777 * 1 2 3 27 27 H 1.09006 * 109.46943 * 66.10591 * 1 2 3 28 28 H 1.00899 * 110.99975 * 296.04662 * 4 2 1 29 29 H 1.00900 * 110.99795 * 59.99651 * 4 2 1 30 30 H 1.07999 * 122.53589 * 359.95573 * 8 7 5 31 31 H 1.07999 * 125.20065 * 179.97438 * 9 8 7 32 32 H 1.08001 * 125.20111 * 0.02562 * 11 7 5 33 33 H 1.08999 * 109.47186 * 178.77949 * 13 12 5 34 34 H 1.08999 * 109.47062 * 298.77053 * 13 12 5 35 35 H 1.08998 * 109.47093 * 58.77406 * 13 12 5 36 36 H 1.09003 * 109.47151 * 50.61860 * 16 14 12 37 37 H 1.09000 * 109.47249 * 170.61619 * 16 14 12 38 38 H 1.09005 * 109.47345 * 290.61872 * 16 14 12 39 39 H 0.97001 * 120.00039 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0400 -0.7212 -1.2492 6 1 3.1295 -0.6922 -1.2661 7 6 1.5760 -2.1549 -1.2261 8 6 2.4111 -3.2022 -0.8772 9 6 1.8426 -4.4085 -0.9076 10 16 0.1606 -4.2556 -1.3984 11 6 0.3280 -2.5101 -1.5349 12 7 1.5137 -0.0555 -2.4482 13 6 1.5367 1.4050 -2.2923 14 6 2.2544 -0.4686 -3.6477 15 1 3.3206 -0.3058 -3.4903 16 6 1.9996 -1.9527 -3.9185 17 6 1.7911 0.3444 -4.8290 18 1 1.0235 1.0933 -4.7015 19 6 2.3435 0.1285 -6.0737 20 7 3.2786 -0.7832 -6.2289 21 14 1.7637 1.1308 -7.5395 22 1 2.0111 2.5723 -7.2823 23 1 2.5082 0.7091 -8.7532 24 1 0.3105 0.9075 -7.7482 25 1 -0.3633 -1.0218 0.1092 26 1 -0.3633 0.6056 0.8303 27 1 -0.3633 0.4163 -0.9396 28 1 1.7502 -0.1989 2.0372 29 1 1.6960 -1.6479 1.2228 30 1 3.4447 -3.0539 -0.6015 31 1 2.3392 -5.3370 -0.6675 32 1 -0.4590 -1.8301 -1.8259 33 1 1.1621 1.8735 -3.2024 34 1 0.9057 1.6905 -1.4506 35 1 2.5591 1.7347 -2.1082 36 1 0.9266 -2.1446 -3.9105 37 1 2.4091 -2.2198 -4.8927 38 1 2.4815 -2.5511 -3.1453 39 1 3.6675 -0.9349 -7.1045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220914156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:46 Heat of formation + Delta-G solvation = 36.912779 kcal Electronic energy + Delta-G solvation = -19772.325082 eV Core-core repulsion = 17034.549021 eV Total energy + Delta-G solvation = -2737.776061 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91272 -37.56505 -36.43653 -34.37854 -31.21145 -30.85870 -29.03921 -28.34536 -26.87249 -25.28579 -23.97789 -22.02749 -20.76753 -19.27626 -18.66183 -18.02149 -17.25414 -17.16059 -16.19619 -15.71274 -15.29763 -14.98606 -14.65689 -14.19809 -14.17532 -14.04400 -13.67856 -13.41167 -13.20768 -13.06985 -12.85447 -12.74690 -12.58476 -12.31601 -12.25188 -12.03588 -11.94398 -11.85347 -11.58778 -11.15459 -10.83081 -10.46934 -9.58515 -9.42920 -9.00741 -8.91385 -8.07587 -6.21093 0.30303 0.95456 1.23769 1.42048 1.43747 1.50873 1.96180 2.42599 3.17897 3.28338 3.89799 3.96613 4.17388 4.32409 4.36807 4.53110 4.59516 4.69246 4.72885 4.82566 4.92023 4.95701 5.02962 5.12850 5.15142 5.21531 5.32851 5.35589 5.45263 5.55512 5.61186 5.71719 5.81464 5.89116 6.27760 6.32635 6.42429 6.68282 6.80311 6.95917 7.48030 8.96670 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.007140 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.583848 B = 3920.582825 C = 4698.145287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 H 0.079 0.921 4 N -0.843 5.843 5 C 0.149 3.851 6 H 0.016 0.984 7 C -0.078 4.078 8 C -0.135 4.135 9 C -0.212 4.212 10 S 0.080 5.920 11 C -0.187 4.187 12 N -0.522 5.522 13 C 0.029 3.971 14 C 0.224 3.776 15 H -0.049 1.049 16 C -0.109 4.109 17 C -0.520 4.520 18 H 0.066 0.934 19 C 0.010 3.990 20 N -0.920 5.920 21 Si 0.957 3.043 22 H -0.271 1.271 23 H -0.287 1.287 24 H -0.271 1.271 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.350 0.650 29 H 0.342 0.658 30 H 0.134 0.866 31 H 0.183 0.817 32 H 0.158 0.842 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.002 0.998 36 H 0.032 0.968 37 H 0.047 0.953 38 H 0.029 0.971 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 -3.294 13.785 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.011 4.011 3 H 0.097 0.903 4 N -0.374 5.374 5 C 0.037 3.963 6 H 0.034 0.966 7 C -0.090 4.090 8 C -0.166 4.166 9 C -0.347 4.347 10 S 0.343 5.657 11 C -0.322 4.322 12 N -0.247 5.247 13 C -0.119 4.119 14 C 0.117 3.883 15 H -0.031 1.031 16 C -0.167 4.167 17 C -0.558 4.558 18 H 0.084 0.916 19 C -0.189 4.189 20 N -0.560 5.560 21 Si 0.783 3.217 22 H -0.196 1.196 23 H -0.213 1.213 24 H -0.197 1.197 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.164 0.836 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.201 0.799 32 H 0.175 0.825 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.020 0.980 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.766 -4.411 13.072 15.366 hybrid contribution 1.230 1.564 -0.731 2.119 sum -5.536 -2.848 12.340 13.822 Atomic orbital electron populations 1.22632 0.96065 1.02356 1.02604 1.21330 0.93749 0.96987 0.89003 0.90345 1.58780 1.67637 1.06898 1.04073 1.20176 0.94871 0.90575 0.90649 0.96641 1.18570 0.93071 0.95445 1.01908 1.20113 1.01088 0.91843 1.03584 1.25699 0.97606 1.02016 1.09404 1.83942 1.10510 1.03330 1.67944 1.25382 1.01372 0.97089 1.08382 1.62154 1.54482 1.06356 1.01694 1.22448 0.98533 0.88660 1.02303 1.18978 0.88530 0.93637 0.87177 1.03141 1.21745 0.98418 0.96495 1.00076 1.21527 1.21312 1.19624 0.93358 0.91600 1.25724 0.95237 0.96430 1.01504 1.70049 1.27897 1.34076 1.23960 0.85622 0.78407 0.79103 0.78546 1.19598 1.21289 1.19654 0.92245 0.91732 0.91650 0.83594 0.84417 0.84803 0.79942 0.82461 0.91773 0.89678 0.97989 0.94898 0.93455 0.95200 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.37 7.74 71.98 0.56 -3.81 16 2 C 0.10 2.81 2.67 44.91 0.12 2.93 16 3 H 0.08 2.23 6.55 -2.39 -0.02 2.21 16 4 N -0.84 -19.95 9.18 -168.68 -1.55 -21.50 16 5 C 0.15 5.32 1.92 44.17 0.08 5.41 16 6 H 0.02 0.65 7.80 -2.39 -0.02 0.64 16 7 C -0.08 -2.54 1.18 -20.92 -0.02 -2.57 16 8 C -0.14 -4.09 8.39 21.22 0.18 -3.91 16 9 C -0.21 -5.54 11.23 66.72 0.75 -4.79 16 10 S 0.08 2.14 23.34 -56.49 -1.32 0.82 16 11 C -0.19 -5.88 6.51 66.72 0.43 -5.45 16 12 N -0.52 -21.53 3.54 -880.61 -3.12 -24.65 16 13 C 0.03 1.08 7.80 127.69 1.00 2.08 16 14 C 0.22 11.50 2.06 44.17 0.09 11.60 16 15 H -0.05 -2.90 7.95 -2.39 -0.02 -2.92 16 16 C -0.11 -5.48 7.63 71.98 0.55 -4.94 16 17 C -0.52 -28.49 7.89 25.60 0.20 -28.29 16 18 H 0.07 3.51 5.97 -2.91 -0.02 3.49 16 19 C 0.01 0.53 5.27 84.65 0.45 0.98 16 20 N -0.92 -54.09 11.29 21.45 0.24 -53.85 16 21 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 25 H 0.06 1.47 5.98 -2.39 -0.01 1.45 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.83 6.08 -2.38 -0.01 1.82 16 28 H 0.35 6.50 9.07 -89.69 -0.81 5.69 16 29 H 0.34 8.02 7.54 -89.69 -0.68 7.35 16 30 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 31 H 0.18 3.68 8.06 -2.91 -0.02 3.65 16 32 H 0.16 5.19 7.31 -2.91 -0.02 5.17 16 33 H 0.06 2.63 5.71 -2.39 -0.01 2.62 16 34 H 0.08 2.60 4.96 -2.39 -0.01 2.59 16 35 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.03 1.59 6.89 -2.39 -0.02 1.57 16 37 H 0.05 2.68 5.86 -2.39 -0.01 2.67 16 38 H 0.03 1.38 5.03 -2.38 -0.01 1.37 16 39 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -60.83 301.92 0.25 -60.58 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.41 Total: 23.38 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 4.38 Total: -30.77 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -4.43 Total: -99.99 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.32 Total: 0.82 kcal Total: -60.83 0.25 -60.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220914156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.494 kcal (2) G-P(sol) polarization free energy of solvation -60.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds