Wall clock time and date at job start Mon Mar 30 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46950 * 2 1 4 4 N 1.46902 * 109.47518 * 239.99733 * 2 1 3 5 5 C 1.53008 * 109.47304 * 119.99619 * 2 1 3 6 6 H 1.08995 * 109.46587 * 51.54508 * 5 2 1 7 7 C 1.50701 * 109.46979 * 291.54713 * 5 2 1 8 8 C 1.38422 * 122.53903 * 121.18477 * 7 5 2 9 9 C 1.33390 * 114.91962 * 179.97438 * 8 7 5 10 10 S 1.75877 * 109.59510 * 0.02562 * 9 8 7 11 11 C 1.33388 * 122.53741 * 300.89207 * 7 5 2 12 12 N 1.46900 * 109.47265 * 171.54849 * 5 2 1 13 13 C 1.46897 * 110.99971 * 68.58869 * 12 5 2 14 14 C 1.46890 * 110.99977 * 192.55024 * 12 5 2 15 15 H 1.09006 * 109.47238 * 301.16493 * 14 12 5 16 16 C 1.52997 * 109.47602 * 61.16435 * 14 12 5 17 17 C 1.50705 * 109.47146 * 181.16605 * 14 12 5 18 18 H 1.08000 * 119.99576 * 354.65740 * 17 14 12 19 19 C 1.37876 * 119.99858 * 174.65655 * 17 14 12 20 20 N 1.31513 * 120.00191 * 350.89975 * 19 17 14 21 21 Si 1.86800 * 119.99792 * 170.89588 * 19 17 14 22 22 H 1.48498 * 109.47502 * 269.99893 * 21 19 17 23 23 H 1.48503 * 109.46997 * 30.00292 * 21 19 17 24 24 H 1.48501 * 109.47063 * 149.99757 * 21 19 17 25 25 H 1.09003 * 109.47132 * 300.00212 * 1 2 3 26 26 H 1.08998 * 109.47121 * 60.00119 * 1 2 3 27 27 H 1.08999 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.00901 * 110.99736 * 61.35617 * 4 2 1 29 29 H 1.00895 * 111.00109 * 185.31694 * 4 2 1 30 30 H 1.08002 * 122.54199 * 359.95683 * 8 7 5 31 31 H 1.08003 * 125.20150 * 179.97438 * 9 8 7 32 32 H 1.07998 * 125.20927 * 0.02901 * 11 7 5 33 33 H 1.09005 * 109.46773 * 187.97927 * 13 12 5 34 34 H 1.09002 * 109.47490 * 307.97611 * 13 12 5 35 35 H 1.08997 * 109.47296 * 67.98212 * 13 12 5 36 36 H 1.09002 * 109.47245 * 183.93730 * 16 14 12 37 37 H 1.09002 * 109.46926 * 303.92975 * 16 14 12 38 38 H 1.08996 * 109.47074 * 63.93327 * 16 14 12 39 39 H 0.96999 * 120.00030 * 7.61839 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0401 -0.7212 1.2493 6 1 1.5586 -1.6959 1.3281 7 6 1.7155 0.0996 2.4708 8 6 0.9394 -0.3856 3.5092 9 6 0.7485 0.4693 4.5152 10 16 1.5776 1.9814 4.1697 11 6 2.1592 1.3467 2.6358 12 7 3.4949 -0.9000 1.1519 13 6 4.1914 0.3897 1.2489 14 6 3.9795 -1.8382 2.1729 15 1 3.7221 -1.4623 3.1633 16 6 3.3261 -3.2053 1.9608 17 6 5.4762 -1.9740 2.0605 18 1 6.0034 -1.4874 1.2532 19 6 6.1724 -2.7194 2.9883 20 7 5.5636 -3.1620 4.0667 21 14 7.9803 -3.1005 2.7134 22 1 8.1089 -4.3745 1.9613 23 1 8.6052 -2.0009 1.9351 24 1 8.6642 -3.2290 4.0253 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.7146 -0.2223 -2.0384 29 1 3.0245 -0.7822 -1.1802 30 1 0.5200 -1.3808 3.5052 31 1 0.1721 0.2646 5.4053 32 1 2.7785 1.8853 1.9339 33 1 5.2504 0.2478 1.0331 34 1 3.7645 1.0883 0.5293 35 1 4.0764 0.7900 2.2561 36 1 3.6314 -3.8818 2.7590 37 1 2.2417 -3.0954 1.9726 38 1 3.6395 -3.6125 0.9996 39 1 4.6033 -3.0606 4.1577 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220914294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:53 Heat of formation + Delta-G solvation = 31.717020 kcal Electronic energy + Delta-G solvation = -19700.682614 eV Core-core repulsion = 16962.681248 eV Total energy + Delta-G solvation = -2738.001366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.06823 -37.57873 -36.44997 -34.46874 -31.56390 -30.61788 -29.46290 -28.61524 -26.62618 -25.01558 -24.34063 -22.06540 -20.85127 -19.64932 -18.87708 -18.57878 -16.97329 -16.70740 -16.42155 -15.70247 -15.62370 -15.33077 -14.89112 -14.57821 -14.11852 -13.77234 -13.67934 -13.41561 -13.19990 -13.09499 -12.95400 -12.63373 -12.60935 -12.55843 -12.30961 -12.16803 -12.06486 -11.93467 -11.79531 -11.48545 -10.55189 -10.37379 -9.68249 -9.45768 -9.29834 -8.93572 -8.51847 -6.24379 0.07057 0.75629 1.02719 1.53988 1.61720 1.75435 1.78730 2.58246 3.23052 3.26030 3.59434 4.00929 4.10148 4.18492 4.23154 4.34596 4.48022 4.56043 4.59766 4.62709 4.72342 4.80156 4.81862 4.95085 5.00916 5.03417 5.09404 5.16423 5.24334 5.34150 5.40750 5.55777 5.58094 5.95310 6.10264 6.39842 6.50697 6.56879 6.79530 6.82267 7.54349 8.83863 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018130 B = 0.007343 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.056736 B = 3812.467128 C = 4583.900536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.112 3.888 3 H 0.032 0.968 4 N -0.844 5.844 5 C 0.140 3.860 6 H 0.077 0.923 7 C -0.131 4.131 8 C -0.141 4.141 9 C -0.214 4.214 10 S 0.095 5.905 11 C -0.215 4.215 12 N -0.509 5.509 13 C 0.029 3.971 14 C 0.213 3.787 15 H -0.039 1.039 16 C -0.121 4.121 17 C -0.589 4.589 18 H 0.052 0.948 19 C -0.030 4.030 20 N -0.940 5.940 21 Si 1.113 2.887 22 H -0.276 1.276 23 H -0.273 1.273 24 H -0.289 1.289 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.343 0.657 29 H 0.350 0.650 30 H 0.136 0.864 31 H 0.184 0.816 32 H 0.173 0.827 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.023 0.977 36 H 0.029 0.971 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 10.050 -5.059 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 H 0.050 0.950 4 N -0.377 5.377 5 C 0.029 3.971 6 H 0.095 0.905 7 C -0.145 4.145 8 C -0.172 4.172 9 C -0.349 4.349 10 S 0.358 5.642 11 C -0.351 4.351 12 N -0.231 5.231 13 C -0.119 4.119 14 C 0.105 3.895 15 H -0.022 1.022 16 C -0.180 4.180 17 C -0.627 4.627 18 H 0.070 0.930 19 C -0.228 4.228 20 N -0.579 5.579 21 Si 0.936 3.064 22 H -0.202 1.202 23 H -0.198 1.198 24 H -0.215 1.215 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.201 0.799 32 H 0.190 0.810 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.063 9.930 -3.799 13.970 hybrid contribution -1.052 0.241 -0.410 1.155 sum -10.115 10.172 -4.208 14.949 Atomic orbital electron populations 1.21718 0.93506 1.02128 1.01904 1.21170 0.95543 0.93921 0.89405 0.95038 1.58558 1.18771 1.57049 1.03315 1.20685 0.89160 0.97019 0.90273 0.90541 1.19692 1.00236 0.94976 0.99613 1.20252 1.01454 1.01252 0.94224 1.25820 1.07566 0.97229 1.04295 1.83907 1.48187 1.16117 1.16035 1.25963 1.07387 0.99625 1.02077 1.62275 1.02104 1.10034 1.48654 1.22620 0.99319 0.90975 0.98972 1.19038 0.94222 0.89063 0.87163 1.02206 1.21742 0.97568 0.98761 0.99902 1.22252 0.92777 1.33523 1.14188 0.92988 1.27023 1.10042 0.93847 0.91895 1.70867 1.11473 1.48961 1.26567 0.82966 0.70561 0.77037 0.75802 1.20226 1.19784 1.21498 0.92515 0.91211 0.92653 0.84363 0.83502 0.84594 0.79852 0.80970 0.92726 0.90971 0.95853 0.95155 0.94112 0.93929 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.34 71.98 0.67 -2.52 16 2 C 0.11 3.09 2.60 44.92 0.12 3.20 16 3 H 0.03 0.85 6.13 -2.39 -0.01 0.84 16 4 N -0.84 -23.00 9.23 -168.67 -1.56 -24.56 16 5 C 0.14 4.80 1.75 44.17 0.08 4.88 16 6 H 0.08 2.89 5.59 -2.39 -0.01 2.88 16 7 C -0.13 -4.32 2.96 -20.92 -0.06 -4.38 16 8 C -0.14 -4.48 9.92 21.22 0.21 -4.27 16 9 C -0.21 -5.94 11.23 66.72 0.75 -5.19 16 10 S 0.09 2.55 23.34 -56.49 -1.32 1.23 16 11 C -0.21 -6.57 7.77 66.72 0.52 -6.06 16 12 N -0.51 -20.51 3.47 -880.60 -3.06 -23.57 16 13 C 0.03 1.10 7.27 127.69 0.93 2.03 16 14 C 0.21 10.57 1.54 44.17 0.07 10.64 16 15 H -0.04 -2.23 6.94 -2.38 -0.02 -2.25 16 16 C -0.12 -5.84 8.80 71.98 0.63 -5.21 16 17 C -0.59 -32.42 7.77 25.60 0.20 -32.22 16 18 H 0.05 2.86 6.56 -2.91 -0.02 2.84 16 19 C -0.03 -1.70 5.23 84.65 0.44 -1.25 16 20 N -0.94 -57.22 13.22 21.45 0.28 -56.93 16 21 Si 1.11 50.71 29.91 68.60 2.05 52.76 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 25 H 0.06 1.35 7.50 -2.39 -0.02 1.33 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.34 7.38 9.05 -89.69 -0.81 6.57 16 29 H 0.35 10.68 7.99 -89.70 -0.72 9.97 16 30 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.17 4.93 5.32 -2.91 -0.02 4.92 16 33 H 0.05 2.26 6.43 -2.38 -0.02 2.24 16 34 H 0.07 2.20 5.70 -2.39 -0.01 2.19 16 35 H 0.02 0.93 5.27 -2.39 -0.01 0.91 16 36 H 0.03 1.57 6.33 -2.39 -0.02 1.55 16 37 H 0.04 1.74 6.00 -2.39 -0.01 1.72 16 38 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.26 15.93 5.77 -92.71 -0.53 15.40 16 Total: -1.00 -62.79 307.77 0.74 -62.05 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -0.22 Total: 29.37 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 4.55 Total: -40.35 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -4.33 Total: -105.06 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.32 Total: 1.23 kcal Total: -62.79 0.74 -62.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220914294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.764 kcal (2) G-P(sol) polarization free energy of solvation -62.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds