Wall clock time and date at job start Mon Mar 30 2020 06:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46910 * 109.46741 * 2 1 4 4 C 1.46893 * 110.99998 * 75.89573 * 3 2 1 5 5 C 1.50697 * 109.47196 * 195.66861 * 4 3 2 6 6 H 1.07997 * 120.00047 * 355.81845 * 5 4 3 7 7 C 1.37879 * 119.99890 * 175.81123 * 5 4 3 8 8 N 1.31516 * 119.99647 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00339 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47058 * 89.99568 * 9 7 5 11 11 H 1.48498 * 109.47415 * 209.99526 * 9 7 5 12 12 H 1.48498 * 109.47153 * 329.99802 * 9 7 5 13 13 C 1.40153 * 110.99308 * 199.85001 * 3 2 1 14 14 C 1.38823 * 119.99353 * 296.03914 * 13 3 2 15 15 C 1.38465 * 119.97501 * 179.97438 * 14 13 3 16 16 O 1.36051 * 120.02704 * 179.97438 * 15 14 13 17 17 C 1.42900 * 116.99911 * 0.02562 * 16 15 14 18 18 C 1.39268 * 119.95415 * 0.02562 * 15 14 13 19 19 N 1.40271 * 120.01393 * 179.97438 * 18 15 14 20 20 C 1.38700 * 119.97573 * 359.97438 * 18 15 14 21 21 C 1.38357 * 120.02713 * 359.74330 * 20 18 15 22 22 F 1.35097 * 119.97611 * 180.27412 * 21 20 18 23 23 H 1.08998 * 109.47308 * 62.15082 * 1 2 3 24 24 H 1.09004 * 109.47048 * 182.14928 * 1 2 3 25 25 H 1.08998 * 109.47211 * 302.15015 * 1 2 3 26 26 H 1.09000 * 109.47292 * 240.00281 * 2 1 3 27 27 H 1.08998 * 109.47531 * 120.00030 * 2 1 3 28 28 H 1.09003 * 109.47397 * 315.67134 * 4 3 2 29 29 H 1.09008 * 109.47161 * 75.67026 * 4 3 2 30 30 H 0.97004 * 119.99973 * 180.02562 * 8 7 5 31 31 H 1.08006 * 120.01314 * 359.96823 * 14 13 3 32 32 H 1.09007 * 109.47055 * 299.99884 * 17 16 15 33 33 H 1.08995 * 109.47360 * 59.99763 * 17 16 15 34 34 H 1.08998 * 109.47255 * 180.02562 * 17 16 15 35 35 H 0.96998 * 119.99978 * 0.02562 * 19 18 15 36 36 H 0.97002 * 119.99897 * 179.97438 * 19 18 15 37 37 H 1.07994 * 119.98406 * 180.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8799 1.9928 1.3300 5 6 2.0196 3.4889 1.2159 6 1 2.2615 3.9376 0.2638 7 6 1.8383 4.2850 2.3270 8 7 1.9597 5.5907 2.2272 9 14 1.4203 3.5090 3.9739 10 1 2.6738 3.1991 4.7074 11 1 0.6002 4.4546 4.7728 12 1 0.6549 2.2562 3.7507 13 6 3.3473 1.4483 -0.4443 14 6 4.3541 0.8335 0.2876 15 6 5.6656 0.8958 -0.1520 16 8 6.6531 0.2941 0.5647 17 6 6.2651 -0.3849 1.7607 18 6 5.9733 1.5757 -1.3278 19 7 7.3016 1.6400 -1.7741 20 6 4.9659 2.1893 -2.0575 21 6 3.6549 2.1215 -1.6205 22 9 2.6738 2.7148 -2.3350 23 1 -0.3634 0.4801 -0.9086 24 1 -0.3633 -1.0270 0.0385 25 1 -0.3633 0.5468 0.8701 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.8995 1.7496 1.7396 29 1 2.6558 1.6048 1.9901 30 1 1.8325 6.1508 3.0090 31 1 4.1144 0.3069 1.1996 32 1 5.7965 0.3228 2.4446 33 1 5.5571 -1.1765 1.5158 34 1 7.1459 -0.8185 2.2344 35 1 8.0060 1.2105 -1.2638 36 1 7.5157 2.1133 -2.5933 37 1 5.2044 2.7162 -2.9696 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227845326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:06 Heat of formation + Delta-G solvation = -42.333816 kcal Electronic energy + Delta-G solvation = -21200.384140 eV Core-core repulsion = 17892.958512 eV Total energy + Delta-G solvation = -3307.425628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.97618 -39.99229 -37.85504 -36.41648 -33.41573 -32.51067 -30.31426 -29.41402 -28.35542 -27.33902 -25.72937 -22.61937 -22.34936 -21.57614 -19.98610 -17.73995 -17.31274 -17.03460 -16.69052 -15.59462 -15.32365 -15.29050 -14.92703 -14.47760 -14.44020 -13.88043 -13.80522 -13.56355 -12.96623 -12.52993 -12.43840 -12.27220 -12.11455 -11.90069 -11.53515 -11.36860 -10.95099 -10.88228 -10.84104 -10.71766 -10.17675 -9.82673 -9.64236 -9.27965 -8.55081 -8.10396 -7.61370 -6.87681 -6.00362 -3.96598 1.63971 1.85243 3.27081 3.34972 3.35435 3.44040 3.96912 4.08299 4.43018 4.56148 5.01615 5.06343 5.22568 5.29922 5.31029 5.49420 5.52023 5.63601 5.77047 5.80206 5.86681 5.94717 6.10369 6.19685 6.37434 6.42703 6.64365 6.71249 6.75545 6.96106 7.11655 7.30759 7.60242 7.75792 7.85191 7.97463 8.22530 8.67669 9.12091 9.60155 11.13241 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.007481 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.217953 B = 3741.731925 C = 3993.371777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 N -0.489 5.489 4 C 0.165 3.835 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.870 3.130 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.079 3.921 14 C -0.161 4.161 15 C 0.045 3.955 16 O -0.324 6.324 17 C 0.032 3.968 18 C 0.207 3.793 19 N -0.876 5.876 20 C -0.203 4.203 21 C 0.141 3.859 22 F -0.127 7.127 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.036 0.964 29 H -0.013 1.013 30 H 0.263 0.737 31 H 0.129 0.871 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.401 0.599 36 H 0.396 0.604 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.936 -13.014 -4.815 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 N -0.210 5.210 4 C 0.041 3.959 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.698 3.302 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.018 4.018 14 C -0.182 4.182 15 C -0.003 4.003 16 O -0.238 6.238 17 C -0.064 4.064 18 C 0.104 3.896 19 N -0.417 5.417 20 C -0.227 4.227 21 C 0.120 3.880 22 F -0.105 7.105 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.004 0.996 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.229 0.771 36 H 0.224 0.776 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.703 -12.570 -5.055 15.585 hybrid contribution 0.233 -0.531 1.626 1.726 sum 7.936 -13.100 -3.430 15.696 Atomic orbital electron populations 1.21748 0.95004 1.00274 1.03130 1.22062 0.96236 0.89170 0.99596 1.59719 1.15163 1.15972 1.30192 1.20361 0.95815 0.96427 0.83334 1.21005 1.46916 0.88436 0.97640 0.90088 1.24868 0.95256 0.94707 0.98408 1.69897 1.50430 1.03486 1.29953 0.86944 0.78806 0.79634 0.84854 1.20439 1.21062 1.19152 1.18288 0.90037 0.99470 0.93993 1.21347 0.91654 1.03953 1.01269 1.18174 0.87491 1.01173 0.93501 1.85892 1.33287 1.67830 1.36820 1.22945 1.01800 0.96117 0.85488 1.16613 0.85652 0.96113 0.91221 1.42221 1.04836 1.64399 1.30287 1.20143 0.90470 1.08560 1.03545 1.17084 0.84359 0.95699 0.90840 1.91472 1.61192 1.81274 1.76567 0.91912 0.93190 0.92225 0.91853 0.95522 0.94616 0.99584 0.92747 0.85283 0.92648 0.93140 0.88728 0.77061 0.77650 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 10.05 37.16 0.37 -1.93 16 2 C 0.06 0.98 5.27 -3.82 -0.02 0.96 16 3 N -0.49 -10.63 4.20 -172.33 -0.72 -11.35 16 4 C 0.17 4.05 3.54 -4.98 -0.02 4.03 16 5 C -0.50 -14.65 9.42 -34.44 -0.32 -14.98 16 6 H 0.08 2.64 7.99 -52.49 -0.42 2.22 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 9 Si 0.87 21.57 27.55 -169.99 -4.68 16.89 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.28 6.42 56.52 0.36 -5.91 16 13 C 0.08 1.64 4.05 -83.56 -0.34 1.30 16 14 C -0.16 -2.96 7.59 -39.28 -0.30 -3.26 16 15 C 0.05 0.76 6.70 -39.12 -0.26 0.50 16 16 O -0.32 -4.77 9.74 -19.90 -0.19 -4.96 16 17 C 0.03 0.37 9.81 101.05 0.99 1.37 16 18 C 0.21 3.29 6.77 -83.44 -0.57 2.72 16 19 N -0.88 -10.40 9.10 32.56 0.30 -10.11 16 20 C -0.20 -3.42 9.86 -39.37 -0.39 -3.81 16 21 C 0.14 2.86 7.30 -39.27 -0.29 2.57 16 22 F -0.13 -2.75 17.07 2.25 0.04 -2.71 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 1.04 6.71 -51.93 -0.35 0.69 16 26 H 0.06 1.02 7.92 -51.93 -0.41 0.60 16 27 H 0.03 0.44 7.95 -51.93 -0.41 0.03 16 28 H 0.04 0.88 5.28 -51.93 -0.27 0.60 16 29 H -0.01 -0.32 6.42 -51.92 -0.33 -0.66 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.13 2.24 5.62 -52.48 -0.29 1.94 16 32 H 0.05 0.70 7.66 -51.92 -0.40 0.31 16 33 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 4.34 8.19 -40.82 -0.33 4.01 16 36 H 0.40 3.71 8.85 -40.82 -0.36 3.35 16 37 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 309.15 15.07 4.66 4.66 Total: -1.00 -33.15 309.15 -5.92 -39.07 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.85 Total: 4.41 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.23 Total: -8.58 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.35 Total: -48.77 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.19 Total: -4.96 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.68 Total: 16.89 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.15 -5.92 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227845326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.268 kcal (2) G-P(sol) polarization free energy of solvation -33.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds