Wall clock time and date at job start Mon Mar 30 2020 06:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46910 * 109.46741 * 2 1 4 4 C 1.46893 * 110.99998 * 75.89573 * 3 2 1 5 5 C 1.50697 * 109.47196 * 195.66861 * 4 3 2 6 6 H 1.07997 * 120.00047 * 355.81845 * 5 4 3 7 7 C 1.37879 * 119.99890 * 175.81123 * 5 4 3 8 8 N 1.31516 * 119.99647 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00339 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47058 * 89.99568 * 9 7 5 11 11 H 1.48498 * 109.47415 * 209.99526 * 9 7 5 12 12 H 1.48498 * 109.47153 * 329.99802 * 9 7 5 13 13 C 1.40153 * 110.99308 * 199.85001 * 3 2 1 14 14 C 1.38823 * 119.99353 * 296.03914 * 13 3 2 15 15 C 1.38465 * 119.97501 * 179.97438 * 14 13 3 16 16 O 1.36051 * 120.02704 * 179.97438 * 15 14 13 17 17 C 1.42900 * 116.99911 * 0.02562 * 16 15 14 18 18 C 1.39268 * 119.95415 * 0.02562 * 15 14 13 19 19 N 1.40271 * 120.01393 * 179.97438 * 18 15 14 20 20 C 1.38700 * 119.97573 * 359.97438 * 18 15 14 21 21 C 1.38357 * 120.02713 * 359.74330 * 20 18 15 22 22 F 1.35097 * 119.97611 * 180.27412 * 21 20 18 23 23 H 1.08998 * 109.47308 * 62.15082 * 1 2 3 24 24 H 1.09004 * 109.47048 * 182.14928 * 1 2 3 25 25 H 1.08998 * 109.47211 * 302.15015 * 1 2 3 26 26 H 1.09000 * 109.47292 * 240.00281 * 2 1 3 27 27 H 1.08998 * 109.47531 * 120.00030 * 2 1 3 28 28 H 1.09003 * 109.47397 * 315.67134 * 4 3 2 29 29 H 1.09008 * 109.47161 * 75.67026 * 4 3 2 30 30 H 0.97004 * 119.99973 * 180.02562 * 8 7 5 31 31 H 1.08006 * 120.01314 * 359.96823 * 14 13 3 32 32 H 1.09007 * 109.47055 * 299.99884 * 17 16 15 33 33 H 1.08995 * 109.47360 * 59.99763 * 17 16 15 34 34 H 1.08998 * 109.47255 * 180.02562 * 17 16 15 35 35 H 0.96998 * 119.99978 * 0.02562 * 19 18 15 36 36 H 0.97002 * 119.99897 * 179.97438 * 19 18 15 37 37 H 1.07994 * 119.98406 * 180.02562 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8799 1.9928 1.3300 5 6 2.0196 3.4889 1.2159 6 1 2.2615 3.9376 0.2638 7 6 1.8383 4.2850 2.3270 8 7 1.9597 5.5907 2.2272 9 14 1.4203 3.5090 3.9739 10 1 2.6738 3.1991 4.7074 11 1 0.6002 4.4546 4.7728 12 1 0.6549 2.2562 3.7507 13 6 3.3473 1.4483 -0.4443 14 6 4.3541 0.8335 0.2876 15 6 5.6656 0.8958 -0.1520 16 8 6.6531 0.2941 0.5647 17 6 6.2651 -0.3849 1.7607 18 6 5.9733 1.5757 -1.3278 19 7 7.3016 1.6400 -1.7741 20 6 4.9659 2.1893 -2.0575 21 6 3.6549 2.1215 -1.6205 22 9 2.6738 2.7148 -2.3350 23 1 -0.3634 0.4801 -0.9086 24 1 -0.3633 -1.0270 0.0385 25 1 -0.3633 0.5468 0.8701 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.8995 1.7496 1.7396 29 1 2.6558 1.6048 1.9901 30 1 1.8325 6.1508 3.0090 31 1 4.1144 0.3069 1.1996 32 1 5.7965 0.3228 2.4446 33 1 5.5571 -1.1765 1.5158 34 1 7.1459 -0.8185 2.2344 35 1 8.0060 1.2105 -1.2638 36 1 7.5157 2.1133 -2.5933 37 1 5.2044 2.7162 -2.9696 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227845326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:05 Heat of formation + Delta-G solvation = -66.718842 kcal Electronic energy + Delta-G solvation = -21201.441554 eV Core-core repulsion = 17892.958512 eV Total energy + Delta-G solvation = -3308.483042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.56371 -41.29726 -39.26198 -37.70851 -34.89373 -34.47517 -31.78154 -30.77970 -30.00774 -28.55770 -27.17968 -24.29601 -23.84036 -22.94600 -21.51601 -19.13749 -18.93000 -18.51802 -18.30186 -16.91869 -16.82699 -16.51336 -16.34887 -16.13787 -15.83099 -15.60043 -15.14255 -15.02786 -14.52746 -14.22794 -14.02605 -13.71258 -13.50795 -13.28165 -12.96061 -12.71409 -12.57851 -12.48480 -12.23296 -11.95841 -11.78996 -11.66136 -11.46456 -11.02969 -10.78178 -9.44955 -9.22188 -8.25790 -8.13660 -6.28470 0.26727 0.44324 1.31768 1.35281 1.45385 2.32206 2.34351 2.63277 2.88059 3.03851 3.12439 3.63966 3.77821 4.12379 4.18017 4.37977 4.38198 4.46566 4.54859 4.57506 4.64724 4.69862 4.73179 4.79691 4.91340 5.00375 5.06482 5.13641 5.33994 5.39226 5.58697 5.71165 5.97244 6.17078 6.51651 6.60883 6.71722 6.78784 7.06355 7.33116 8.91848 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.007481 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.217953 B = 3741.731925 C = 3993.371777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 N -0.509 5.509 4 C 0.179 3.821 5 C -0.509 4.509 6 H 0.027 0.973 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.243 1.243 13 C 0.049 3.951 14 C -0.167 4.167 15 C 0.047 3.953 16 O -0.323 6.323 17 C 0.023 3.977 18 C 0.213 3.787 19 N -0.856 5.856 20 C -0.202 4.202 21 C 0.105 3.895 22 F -0.147 7.147 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.040 0.960 29 H -0.007 1.007 30 H 0.265 0.735 31 H 0.138 0.862 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.410 0.590 36 H 0.410 0.590 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.194 -15.546 -3.660 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.072 4.072 3 N -0.231 5.231 4 C 0.053 3.947 5 C -0.547 4.547 6 H 0.045 0.955 7 C -0.191 4.191 8 N -0.591 5.591 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.167 1.167 13 C -0.048 4.048 14 C -0.189 4.189 15 C -0.003 4.003 16 O -0.237 6.237 17 C -0.072 4.072 18 C 0.107 3.893 19 N -0.399 5.399 20 C -0.227 4.227 21 C 0.085 3.915 22 F -0.126 7.126 23 H 0.070 0.930 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.011 0.989 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.240 0.760 36 H 0.241 0.759 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.004 -15.134 -3.932 18.043 hybrid contribution -0.006 0.249 1.162 1.188 sum 8.998 -14.885 -2.770 17.612 Atomic orbital electron populations 1.21740 0.94035 1.02204 1.01754 1.22194 0.96986 0.87131 1.00855 1.59551 1.16575 1.18566 1.28391 1.20062 0.95890 0.93401 0.85335 1.21197 1.46579 0.91323 0.95609 0.95452 1.25866 0.94991 0.95090 1.03154 1.70077 1.52091 1.05452 1.31484 0.85746 0.79251 0.79403 0.78769 1.19069 1.20702 1.16682 1.18453 0.90182 1.01230 0.94925 1.21377 0.91925 1.04127 1.01467 1.18299 0.87419 1.00733 0.93809 1.85905 1.32550 1.67648 1.37611 1.23248 1.03866 0.95894 0.84174 1.16706 0.86938 0.94932 0.90696 1.42184 1.03355 1.63670 1.30684 1.20335 0.89372 1.08548 1.04437 1.17537 0.85298 0.96984 0.91729 1.91404 1.62227 1.81901 1.77050 0.93011 0.89544 0.93843 0.90598 0.94049 0.94237 0.98918 0.92562 0.84428 0.93796 0.92018 0.85296 0.76004 0.75934 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 10.05 71.98 0.72 -3.55 16 2 C 0.05 1.84 5.27 86.30 0.45 2.30 16 3 N -0.51 -22.38 4.20 -699.12 -2.94 -25.32 16 4 C 0.18 8.76 3.54 85.56 0.30 9.07 16 5 C -0.51 -30.76 9.42 25.60 0.24 -30.52 16 6 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 7 C 0.01 0.34 5.47 84.65 0.46 0.80 16 8 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 9 Si 0.95 44.38 27.55 68.60 1.89 46.27 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.24 -10.42 6.42 99.48 0.64 -9.79 16 13 C 0.05 2.07 4.05 38.13 0.15 2.22 16 14 C -0.17 -6.05 7.59 22.46 0.17 -5.88 16 15 C 0.05 1.50 6.70 22.57 0.15 1.65 16 16 O -0.32 -8.64 9.74 -94.12 -0.92 -9.56 16 17 C 0.02 0.47 9.81 113.37 1.11 1.58 16 18 C 0.21 6.42 6.77 38.15 0.26 6.68 16 19 N -0.86 -18.05 9.10 -50.90 -0.46 -18.52 16 20 C -0.20 -6.78 9.86 22.41 0.22 -6.55 16 21 C 0.11 4.41 7.30 22.47 0.16 4.57 16 22 F -0.15 -6.78 17.07 44.97 0.77 -6.01 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.04 1.45 6.71 -2.39 -0.02 1.44 16 26 H 0.08 2.35 7.92 -2.39 -0.02 2.33 16 27 H 0.04 1.27 7.95 -2.39 -0.02 1.25 16 28 H 0.04 1.90 5.28 -2.39 -0.01 1.89 16 29 H -0.01 -0.32 6.42 -2.38 -0.02 -0.34 16 30 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 31 H 0.14 4.57 5.62 -2.91 -0.02 4.56 16 32 H 0.04 1.02 7.66 -2.38 -0.02 1.00 16 33 H 0.06 1.14 7.66 -2.39 -0.02 1.13 16 34 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.41 7.59 8.19 -92.71 -0.76 6.83 16 36 H 0.41 6.52 8.85 -92.71 -0.82 5.70 16 37 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -75.07 309.15 2.52 -72.55 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -0.54 Total: 19.29 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.42 Total: -17.64 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -3.10 Total: -104.90 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.92 Total: -9.56 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.77 Total: -6.01 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.89 Total: 46.27 kcal Total: -75.07 2.52 -72.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227845326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.828 kcal (2) G-P(sol) polarization free energy of solvation -75.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds