Wall clock time and date at job start Mon Mar 30 2020 06:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36042 * 117.00024 * 2 1 4 4 C 1.38504 * 120.02497 * 359.72595 * 3 2 1 5 5 C 1.38787 * 119.97390 * 179.74669 * 4 3 2 6 6 N 1.40159 * 119.99508 * 180.29748 * 5 4 3 7 7 C 1.46895 * 110.99500 * 299.15337 * 6 5 4 8 8 C 1.46895 * 110.99599 * 63.10647 * 6 5 4 9 9 H 1.08994 * 109.47403 * 296.28438 * 8 6 5 10 10 C 1.53011 * 109.46758 * 176.28951 * 8 6 5 11 11 C 1.50697 * 109.47288 * 56.29315 * 8 6 5 12 12 H 1.08001 * 120.00304 * 5.60143 * 11 8 6 13 13 C 1.37887 * 119.99895 * 185.61062 * 11 8 6 14 14 N 1.31513 * 119.99595 * 195.75243 * 13 11 8 15 15 Si 1.86795 * 120.00078 * 15.75292 * 13 11 8 16 16 H 1.48497 * 109.47089 * 95.62767 * 15 13 11 17 17 H 1.48505 * 109.47082 * 215.63165 * 15 13 11 18 18 H 1.48504 * 109.47213 * 335.62676 * 15 13 11 19 19 C 1.39016 * 120.01549 * 0.52917 * 5 4 3 20 20 F 1.35105 * 119.97566 * 179.72847 * 19 5 4 21 21 C 1.38317 * 120.04999 * 359.74370 * 19 5 4 22 22 C 1.38733 * 120.02636 * 359.97438 * 21 19 5 23 23 N 1.40283 * 120.00655 * 180.02562 * 22 21 19 24 24 H 1.08997 * 109.47008 * 59.99778 * 1 2 3 25 25 H 1.08996 * 109.47157 * 299.99356 * 1 2 3 26 26 H 1.09001 * 109.46797 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.01713 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.47616 * 60.00372 * 7 6 5 29 29 H 1.09007 * 109.46832 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47486 * 299.99559 * 7 6 5 31 31 H 1.08995 * 109.47030 * 59.75189 * 10 8 6 32 32 H 1.08999 * 109.47019 * 179.75091 * 10 8 6 33 33 H 1.09000 * 109.46783 * 299.75102 * 10 8 6 34 34 H 0.97007 * 119.99822 * 179.97438 * 14 13 11 35 35 H 1.07998 * 119.98975 * 180.02562 * 21 19 5 36 36 H 0.97012 * 119.99851 * 179.97438 * 23 22 21 37 37 H 0.96999 * 120.00847 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2121 0.0000 4 6 1.2928 2.3741 -0.0057 5 6 1.9240 3.6101 -0.0004 6 7 1.1616 4.7862 0.0001 7 6 0.3187 4.8675 -1.2002 8 6 0.3506 4.8872 1.2207 9 1 -0.3693 4.0693 1.2474 10 6 -0.3949 6.2233 1.2285 11 6 1.2484 4.8059 2.4284 12 1 2.3209 4.7819 2.3035 13 6 0.7005 4.7620 3.6930 14 7 1.4533 5.0017 4.7444 15 14 -1.1109 4.3621 3.9127 16 1 -1.2671 2.9124 4.1942 17 1 -1.6573 5.1485 5.0478 18 1 -1.8483 4.7075 2.6709 19 6 3.3123 3.6820 -0.0004 20 9 3.9259 4.8857 -0.0008 21 6 4.0659 2.5222 -0.0004 22 6 3.4370 1.2856 0.0002 23 7 4.2018 0.1096 0.0007 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2142 2.3183 -0.0098 28 1 -0.3573 4.0128 -1.2282 29 1 -0.2626 5.7892 -1.1742 30 1 0.9500 4.8607 -2.0887 31 1 -1.0409 6.2840 0.3527 32 1 -1.0001 6.2964 2.1321 33 1 0.3252 7.0413 1.2063 34 1 1.0678 4.9712 5.6340 35 1 5.1444 2.5792 0.0000 36 1 3.7619 -0.7551 0.0015 37 1 5.1704 0.1608 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227847411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:35 Heat of formation + Delta-G solvation = -34.132113 kcal Electronic energy + Delta-G solvation = -21505.235918 eV Core-core repulsion = 18198.165943 eV Total energy + Delta-G solvation = -3307.069975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.92932 -39.93937 -37.87175 -36.40183 -33.56632 -32.38442 -30.02508 -29.33691 -28.02800 -27.04157 -25.25816 -24.04960 -22.29741 -21.34524 -19.56487 -17.67144 -17.33736 -16.97927 -16.56624 -15.58748 -15.44357 -15.22280 -14.75526 -14.46106 -14.13536 -13.93962 -13.77228 -13.16572 -12.92407 -12.56561 -12.44084 -12.38376 -12.13664 -11.64300 -11.55745 -11.30375 -10.86059 -10.82585 -10.57239 -10.51274 -10.27798 -9.73745 -9.51594 -9.12465 -8.46087 -8.03507 -7.57119 -6.80976 -6.06301 -3.98887 1.71442 1.92975 3.24778 3.34311 3.35561 3.49760 4.02564 4.16073 4.41695 4.65400 5.08014 5.12014 5.24699 5.27467 5.35102 5.56859 5.68983 5.77385 5.88545 5.92197 6.00502 6.20379 6.22838 6.43708 6.46808 6.55040 6.60531 6.82502 6.88711 7.13731 7.32455 7.38526 7.66120 7.82300 7.87249 8.03141 8.25128 8.65057 9.08537 9.58489 11.06996 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.008247 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.563191 B = 3394.539451 C = 3744.492341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.324 6.324 3 C 0.046 3.954 4 C -0.159 4.159 5 C 0.089 3.911 6 N -0.492 5.492 7 C 0.027 3.973 8 C 0.191 3.809 9 H -0.004 1.004 10 C -0.140 4.140 11 C -0.506 4.506 12 H 0.081 0.919 13 C 0.077 3.923 14 N -0.888 5.888 15 Si 0.857 3.143 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.257 1.257 19 C 0.140 3.860 20 F -0.128 7.128 21 C -0.202 4.202 22 C 0.206 3.794 23 N -0.876 5.876 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.128 0.872 28 H 0.017 0.983 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.262 0.738 35 H 0.135 0.865 36 H 0.401 0.599 37 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -8.819 -11.536 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.239 6.239 3 C -0.003 4.003 4 C -0.180 4.180 5 C -0.008 4.008 6 N -0.213 5.213 7 C -0.121 4.121 8 C 0.086 3.914 9 H 0.013 0.987 10 C -0.198 4.198 11 C -0.544 4.544 12 H 0.099 0.901 13 C -0.125 4.125 14 N -0.526 5.526 15 Si 0.684 3.316 16 H -0.209 1.209 17 H -0.212 1.212 18 H -0.181 1.181 19 C 0.119 3.881 20 F -0.107 7.107 21 C -0.226 4.226 22 C 0.103 3.897 23 N -0.418 5.418 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.112 0.888 27 H 0.146 0.854 28 H 0.035 0.965 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.153 0.847 36 H 0.229 0.771 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.063 -8.461 -11.328 14.139 hybrid contribution -1.542 -0.829 0.537 1.831 sum -1.605 -9.289 -10.792 14.329 Atomic orbital electron populations 1.22937 0.78914 1.03118 1.01367 1.85886 1.20857 1.26734 1.90378 1.18157 0.90141 0.84450 1.07539 1.21272 0.99902 0.91738 1.05086 1.18152 0.91255 0.89127 1.02242 1.59719 1.25976 1.32420 1.03212 1.22442 0.96124 1.00558 0.92941 1.19733 0.91349 0.92823 0.87518 0.98687 1.22193 0.98900 1.00012 0.98671 1.20870 0.94909 1.50594 0.88003 0.90086 1.24836 0.97040 0.94753 0.95885 1.69976 1.36366 1.47749 0.98489 0.87259 0.87361 0.78620 0.78330 1.20873 1.21160 1.18113 1.17055 0.89180 0.80066 1.01826 1.91464 1.82725 1.42942 1.93551 1.20118 0.99819 0.89428 1.13267 1.16593 0.87057 0.87105 0.98988 1.42212 1.07802 1.05167 1.86648 0.93176 0.92677 0.88783 0.85436 0.96478 0.90947 0.92324 0.95599 0.93246 0.92246 0.92760 0.84688 0.77114 0.77710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.32 -4.97 9.74 -19.87 -0.19 -5.17 16 3 C 0.05 0.80 6.70 -39.12 -0.26 0.53 16 4 C -0.16 -3.00 7.60 -39.28 -0.30 -3.30 16 5 C 0.09 1.87 3.60 -83.56 -0.30 1.57 16 6 N -0.49 -10.64 4.44 -172.53 -0.77 -11.41 16 7 C 0.03 0.46 9.07 60.06 0.54 1.01 16 8 C 0.19 4.58 1.35 -68.86 -0.09 4.49 16 9 H 0.00 -0.10 5.92 -51.93 -0.31 -0.41 16 10 C -0.14 -3.09 8.35 37.16 0.31 -2.78 16 11 C -0.51 -14.37 8.38 -34.44 -0.29 -14.66 16 12 H 0.08 2.58 7.25 -52.49 -0.38 2.20 16 13 C 0.08 2.23 5.35 -17.82 -0.10 2.14 16 14 N -0.89 -27.31 13.96 55.43 0.77 -26.54 16 15 Si 0.86 21.14 25.84 -169.99 -4.39 16.75 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.26 -5.92 5.49 56.52 0.31 -5.61 16 19 C 0.14 2.88 6.83 -39.26 -0.27 2.61 16 20 F -0.13 -2.81 17.07 2.25 0.04 -2.77 16 21 C -0.20 -3.51 9.86 -39.37 -0.39 -3.90 16 22 C 0.21 3.38 6.77 -83.44 -0.57 2.82 16 23 N -0.88 -10.90 9.11 32.56 0.30 -10.60 16 24 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 25 H 0.05 0.75 7.67 -51.93 -0.40 0.35 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.13 2.28 5.28 -52.48 -0.28 2.01 16 28 H 0.02 0.27 7.17 -51.93 -0.37 -0.10 16 29 H 0.07 1.18 6.09 -51.93 -0.32 0.86 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.48 6.30 -51.93 -0.33 0.15 16 32 H 0.05 1.11 5.10 -51.93 -0.26 0.85 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 35 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.40 4.56 8.19 -40.81 -0.33 4.22 16 37 H 0.40 3.91 8.85 -40.82 -0.36 3.55 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -32.50 299.80 -5.09 -37.59 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.65 Total: 5.73 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -0.71 Total: -8.09 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.30 Total: -48.55 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.19 Total: -5.17 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.39 Total: 16.75 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.50 -5.09 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227847411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.458 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds