Wall clock time and date at job start Mon Mar 30 2020 06:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36042 * 117.00024 * 2 1 4 4 C 1.38504 * 120.02497 * 359.72595 * 3 2 1 5 5 C 1.38787 * 119.97390 * 179.74669 * 4 3 2 6 6 N 1.40159 * 119.99508 * 180.29748 * 5 4 3 7 7 C 1.46895 * 110.99500 * 299.15337 * 6 5 4 8 8 C 1.46895 * 110.99599 * 63.10647 * 6 5 4 9 9 H 1.08994 * 109.47403 * 296.28438 * 8 6 5 10 10 C 1.53011 * 109.46758 * 176.28951 * 8 6 5 11 11 C 1.50697 * 109.47288 * 56.29315 * 8 6 5 12 12 H 1.08001 * 120.00304 * 5.60143 * 11 8 6 13 13 C 1.37887 * 119.99895 * 185.61062 * 11 8 6 14 14 N 1.31513 * 119.99595 * 195.75243 * 13 11 8 15 15 Si 1.86795 * 120.00078 * 15.75292 * 13 11 8 16 16 H 1.48497 * 109.47089 * 95.62767 * 15 13 11 17 17 H 1.48505 * 109.47082 * 215.63165 * 15 13 11 18 18 H 1.48504 * 109.47213 * 335.62676 * 15 13 11 19 19 C 1.39016 * 120.01549 * 0.52917 * 5 4 3 20 20 F 1.35105 * 119.97566 * 179.72847 * 19 5 4 21 21 C 1.38317 * 120.04999 * 359.74370 * 19 5 4 22 22 C 1.38733 * 120.02636 * 359.97438 * 21 19 5 23 23 N 1.40283 * 120.00655 * 180.02562 * 22 21 19 24 24 H 1.08997 * 109.47008 * 59.99778 * 1 2 3 25 25 H 1.08996 * 109.47157 * 299.99356 * 1 2 3 26 26 H 1.09001 * 109.46797 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.01713 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.47616 * 60.00372 * 7 6 5 29 29 H 1.09007 * 109.46832 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47486 * 299.99559 * 7 6 5 31 31 H 1.08995 * 109.47030 * 59.75189 * 10 8 6 32 32 H 1.08999 * 109.47019 * 179.75091 * 10 8 6 33 33 H 1.09000 * 109.46783 * 299.75102 * 10 8 6 34 34 H 0.97007 * 119.99822 * 179.97438 * 14 13 11 35 35 H 1.07998 * 119.98975 * 180.02562 * 21 19 5 36 36 H 0.97012 * 119.99851 * 179.97438 * 23 22 21 37 37 H 0.96999 * 120.00847 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2121 0.0000 4 6 1.2928 2.3741 -0.0057 5 6 1.9240 3.6101 -0.0004 6 7 1.1616 4.7862 0.0001 7 6 0.3187 4.8675 -1.2002 8 6 0.3506 4.8872 1.2207 9 1 -0.3693 4.0693 1.2474 10 6 -0.3949 6.2233 1.2285 11 6 1.2484 4.8059 2.4284 12 1 2.3209 4.7819 2.3035 13 6 0.7005 4.7620 3.6930 14 7 1.4533 5.0017 4.7444 15 14 -1.1109 4.3621 3.9127 16 1 -1.2671 2.9124 4.1942 17 1 -1.6573 5.1485 5.0478 18 1 -1.8483 4.7075 2.6709 19 6 3.3123 3.6820 -0.0004 20 9 3.9259 4.8857 -0.0008 21 6 4.0659 2.5222 -0.0004 22 6 3.4370 1.2856 0.0002 23 7 4.2018 0.1096 0.0007 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2142 2.3183 -0.0098 28 1 -0.3573 4.0128 -1.2282 29 1 -0.2626 5.7892 -1.1742 30 1 0.9500 4.8607 -2.0887 31 1 -1.0409 6.2840 0.3527 32 1 -1.0001 6.2964 2.1321 33 1 0.3252 7.0413 1.2063 34 1 1.0678 4.9712 5.6340 35 1 5.1444 2.5792 0.0000 36 1 3.7619 -0.7551 0.0015 37 1 5.1704 0.1608 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227847411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:35 Heat of formation + Delta-G solvation = -58.680482 kcal Electronic energy + Delta-G solvation = -21506.300415 eV Core-core repulsion = 18198.165943 eV Total energy + Delta-G solvation = -3308.134472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.53508 -41.28110 -39.32989 -37.73865 -35.17745 -34.20127 -31.78329 -30.70906 -29.34013 -28.29253 -26.96604 -25.75370 -23.69782 -22.81117 -21.26032 -19.06440 -18.96380 -18.43882 -18.23741 -17.18246 -16.73538 -16.42104 -16.25305 -16.01953 -15.74717 -15.56423 -15.17767 -14.86401 -14.49000 -14.26054 -13.99029 -13.70244 -13.48057 -13.33353 -13.00825 -12.72275 -12.56498 -12.33907 -12.20950 -12.01650 -11.94677 -11.51332 -11.18104 -10.97090 -10.61459 -9.41654 -9.17592 -8.26815 -8.10201 -6.23531 0.30530 0.49386 1.31370 1.33978 1.44129 2.33955 2.35172 2.66197 2.92118 3.07196 3.16262 3.67292 3.80661 4.17773 4.37733 4.38634 4.43664 4.50484 4.57967 4.65048 4.69733 4.72956 4.76379 4.82172 4.86737 4.95592 5.07799 5.14927 5.37160 5.51198 5.69887 5.78707 6.00623 6.18689 6.51093 6.65250 6.73617 6.84486 7.07748 7.37824 8.91134 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.008247 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.563191 B = 3394.539451 C = 3744.492341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.324 6.324 3 C 0.045 3.955 4 C -0.166 4.166 5 C 0.062 3.938 6 N -0.511 5.511 7 C 0.027 3.973 8 C 0.196 3.804 9 H -0.001 1.001 10 C -0.137 4.137 11 C -0.504 4.504 12 H 0.030 0.970 13 C 0.018 3.982 14 N -0.942 5.942 15 Si 0.924 3.076 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.226 1.226 19 C 0.105 3.895 20 F -0.147 7.147 21 C -0.203 4.203 22 C 0.210 3.790 23 N -0.858 5.858 24 H 0.062 0.938 25 H 0.041 0.959 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.158 0.842 36 H 0.409 0.591 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -10.622 -12.984 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.238 6.238 3 C -0.005 4.005 4 C -0.188 4.188 5 C -0.035 4.035 6 N -0.232 5.232 7 C -0.120 4.120 8 C 0.089 3.911 9 H 0.017 0.983 10 C -0.195 4.195 11 C -0.542 4.542 12 H 0.048 0.952 13 C -0.180 4.180 14 N -0.582 5.582 15 Si 0.747 3.253 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.149 1.149 19 C 0.084 3.916 20 F -0.126 7.126 21 C -0.228 4.228 22 C 0.104 3.896 23 N -0.401 5.401 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.147 0.853 27 H 0.154 0.846 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.175 0.825 36 H 0.239 0.761 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.921 -10.301 -12.818 16.555 hybrid contribution -0.836 -0.382 0.929 1.307 sum -2.758 -10.683 -11.888 16.219 Atomic orbital electron populations 1.23238 0.77153 1.05463 1.01305 1.85896 1.22624 1.25358 1.89949 1.18307 0.90691 0.84890 1.06567 1.21326 1.00428 0.91520 1.05511 1.18325 0.91426 0.89707 1.04078 1.59586 1.26517 1.33534 1.03607 1.22527 0.96222 1.01675 0.91556 1.19562 0.90756 0.93766 0.86970 0.98342 1.22104 0.98909 0.98249 1.00201 1.21040 0.93314 1.49628 0.90250 0.95210 1.25712 1.02332 0.94602 0.95355 1.70134 1.38992 1.49962 0.99142 0.86187 0.81302 0.78329 0.79433 1.20458 1.21058 1.14869 1.17502 0.89856 0.80353 1.03913 1.91399 1.83018 1.44197 1.93990 1.20323 1.00894 0.88888 1.12675 1.16698 0.87317 0.87926 0.97639 1.42171 1.08517 1.04266 1.85101 0.91929 0.93999 0.85319 0.84591 0.94986 0.89822 0.91111 0.91725 0.93757 0.93673 0.92736 0.82462 0.76087 0.76007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.81 113.37 1.11 1.61 16 2 O -0.32 -9.11 9.74 -94.03 -0.92 -10.03 16 3 C 0.04 1.49 6.70 22.57 0.15 1.64 16 4 C -0.17 -6.16 7.60 22.46 0.17 -5.98 16 5 C 0.06 2.60 3.60 38.13 0.14 2.74 16 6 N -0.51 -21.96 4.44 -699.76 -3.11 -25.07 16 7 C 0.03 0.87 9.07 127.69 1.16 2.03 16 8 C 0.20 9.23 1.35 44.17 0.06 9.29 16 9 H 0.00 -0.04 5.92 -2.39 -0.01 -0.05 16 10 C -0.14 -5.80 8.35 71.99 0.60 -5.20 16 11 C -0.50 -29.42 8.38 25.60 0.21 -29.20 16 12 H 0.03 2.00 7.25 -2.91 -0.02 1.98 16 13 C 0.02 1.03 5.35 84.66 0.45 1.48 16 14 N -0.94 -59.94 13.96 21.45 0.30 -59.64 16 15 Si 0.92 43.35 25.84 68.60 1.77 45.12 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.23 -9.40 5.49 99.48 0.55 -8.86 16 19 C 0.10 4.43 6.83 22.48 0.15 4.58 16 20 F -0.15 -6.79 17.07 44.97 0.77 -6.02 16 21 C -0.20 -7.03 9.86 22.41 0.22 -6.81 16 22 C 0.21 6.60 6.77 38.14 0.26 6.86 16 23 N -0.86 -19.22 9.11 -50.90 -0.46 -19.69 16 24 H 0.06 1.22 7.65 -2.39 -0.02 1.20 16 25 H 0.04 1.03 7.67 -2.39 -0.02 1.02 16 26 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.14 4.64 5.28 -2.91 -0.02 4.62 16 28 H 0.03 0.94 7.17 -2.39 -0.02 0.92 16 29 H 0.08 2.48 6.09 -2.38 -0.01 2.46 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 2.22 6.30 -2.39 -0.02 2.20 16 32 H 0.04 1.89 5.10 -2.39 -0.01 1.88 16 33 H 0.04 2.00 8.14 -2.39 -0.02 1.99 16 34 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 35 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.41 8.12 8.19 -92.70 -0.76 7.36 16 37 H 0.41 7.02 8.85 -92.71 -0.82 6.20 16 Total: -1.00 -73.05 299.80 2.42 -70.63 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.62 Total: 21.65 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 4.69 Total: -16.96 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -3.27 Total: -104.39 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.92 Total: -10.03 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.77 Total: -6.02 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.77 Total: 45.12 kcal Total: -73.05 2.42 -70.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227847411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.951 kcal (2) G-P(sol) polarization free energy of solvation -73.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds