Wall clock time and date at job start Mon Mar 30 2020 07:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46833 * 2 1 4 4 C 1.53005 * 109.47096 * 175.01013 * 3 2 1 5 5 H 1.08993 * 109.47084 * 305.29898 * 4 3 2 6 6 O 1.42898 * 109.46895 * 65.29517 * 4 3 2 7 7 C 1.42905 * 113.99936 * 205.17944 * 6 4 3 8 8 C 1.53003 * 109.47156 * 184.98353 * 7 6 4 9 9 C 1.50704 * 109.46920 * 185.29450 * 4 3 2 10 10 N 1.29938 * 126.28685 * 284.68758 * 9 4 3 11 11 O 1.21304 * 110.24728 * 179.84223 * 10 9 4 12 12 C 1.33638 * 109.81156 * 0.42847 * 11 10 9 13 13 C 1.50701 * 126.55262 * 179.75797 * 12 11 10 14 14 C 1.53000 * 109.47168 * 269.97200 * 13 12 11 15 15 C 1.50701 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00191 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99722 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00002 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99804 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47257 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47074 * 120.00039 * 19 17 15 22 22 H 1.48498 * 109.47189 * 240.00321 * 19 17 15 23 23 N 1.31135 * 106.89895 * 359.73553 * 12 11 10 24 24 H 1.09007 * 109.46522 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47225 * 300.00013 * 1 2 3 26 26 H 1.08997 * 109.46914 * 60.00540 * 1 2 3 27 27 H 1.09001 * 109.47225 * 239.99987 * 2 1 3 28 28 H 1.08998 * 109.47646 * 119.99588 * 2 1 3 29 29 H 1.08996 * 109.47206 * 55.00599 * 3 2 1 30 30 H 1.09007 * 109.47017 * 295.00451 * 3 2 1 31 31 H 1.08997 * 109.46933 * 304.98094 * 7 6 4 32 32 H 1.08993 * 109.46755 * 64.97913 * 7 6 4 33 33 H 1.08993 * 109.47132 * 60.00001 * 8 7 6 34 34 H 1.09002 * 109.46743 * 180.02562 * 8 7 6 35 35 H 1.09007 * 109.46825 * 299.99747 * 8 7 6 36 36 H 1.08996 * 109.47324 * 29.97683 * 13 12 11 37 37 H 1.09004 * 109.47605 * 149.97362 * 13 12 11 38 38 H 1.09000 * 109.47178 * 299.99717 * 14 13 12 39 39 H 1.09006 * 109.47116 * 59.99976 * 14 13 12 40 40 H 0.97009 * 119.99557 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5649 1.4444 0.1255 5 1 3.8575 0.8757 1.0080 6 8 4.1392 0.8467 -1.0385 7 6 5.4343 0.2822 -0.8230 8 6 6.0018 -0.2150 -2.1541 9 6 4.0563 2.8631 0.2563 10 7 4.1398 3.7392 -0.6997 11 8 4.5706 4.7889 -0.2706 12 6 4.8188 4.6757 1.0376 13 6 5.3663 5.7485 1.9434 14 6 6.8943 5.6730 1.9578 15 6 7.4418 6.7463 2.8631 16 1 6.7673 7.4150 3.3771 17 6 8.8038 6.8744 3.0351 18 7 9.6251 6.0597 2.4096 19 14 9.4825 8.2052 4.1567 20 1 8.3589 8.9831 4.7380 21 1 10.2676 7.5781 5.2501 22 1 10.3602 9.1119 3.3741 23 7 4.4945 3.4529 1.3827 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6054 1.9815 0.8418 30 1 1.7515 1.9299 -0.9314 31 1 6.0966 1.0410 -0.4065 32 1 5.3553 -0.5529 -0.1271 33 1 6.0807 0.6201 -2.8500 34 1 6.9894 -0.6460 -1.9897 35 1 5.3393 -0.9739 -2.5707 36 1 5.0542 6.7268 1.5778 37 1 4.9856 5.6001 2.9540 38 1 7.2063 4.6948 2.3235 39 1 7.2750 5.8216 0.9473 40 1 10.5834 6.1501 2.5304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233296847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:52 Heat of formation + Delta-G solvation = -31.192320 kcal Electronic energy + Delta-G solvation = -20328.433164 eV Core-core repulsion = 17144.950973 eV Total energy + Delta-G solvation = -3183.482191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.63657 -39.87200 -37.06178 -36.31621 -35.72026 -34.32904 -32.55324 -31.80273 -30.00890 -27.76229 -26.12106 -24.76804 -23.92693 -23.45917 -22.21666 -21.71665 -19.19267 -18.76558 -18.39876 -17.97130 -17.01184 -16.50468 -16.12184 -15.80413 -15.70481 -15.30350 -14.93771 -14.36838 -14.18511 -13.79207 -13.61122 -13.43687 -13.15738 -13.09920 -12.94453 -12.85492 -12.65974 -12.55927 -12.30670 -12.18984 -12.08294 -11.97912 -11.92460 -11.73354 -11.54680 -11.33156 -10.99317 -10.83240 -10.58650 -8.21401 -6.33407 0.08302 1.09107 1.45431 1.46141 1.59236 1.83232 2.27552 2.43454 2.60290 3.12425 3.14283 3.67711 3.78542 4.00538 4.03758 4.15035 4.18264 4.27202 4.33968 4.41763 4.50936 4.56496 4.61300 4.66824 4.79816 4.83201 4.87381 4.90872 4.93508 4.99334 5.14936 5.21195 5.30328 5.41912 5.44278 5.50916 5.76597 5.94624 6.11887 6.82497 7.09526 7.36962 8.91302 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.003712 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.750986 B = 7540.388151 C = 8168.064697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.102 4.102 4 C 0.185 3.815 5 H 0.102 0.898 6 O -0.373 6.373 7 C 0.047 3.953 8 C -0.144 4.144 9 C 0.136 3.864 10 N -0.389 5.389 11 O 0.062 5.938 12 C 0.207 3.793 13 C -0.014 4.014 14 C 0.034 3.966 15 C -0.537 4.537 16 H 0.079 0.921 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.254 1.254 21 H -0.282 1.282 22 H -0.282 1.282 23 N -0.504 5.504 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.020 0.980 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.116 0.884 38 H -0.007 1.007 39 H -0.004 1.004 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.505 -11.685 -4.189 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.140 4.140 4 C 0.124 3.876 5 H 0.120 0.880 6 O -0.291 6.291 7 C -0.030 4.030 8 C -0.201 4.201 9 C -0.138 4.138 10 N -0.101 5.101 11 O 0.006 5.994 12 C -0.012 4.012 13 C -0.053 4.053 14 C -0.004 4.004 15 C -0.575 4.575 16 H 0.097 0.903 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.795 3.205 20 H -0.177 1.177 21 H -0.208 1.208 22 H -0.208 1.208 23 N -0.239 5.239 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.012 0.988 39 H 0.014 0.986 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.714 -12.260 -4.965 19.785 hybrid contribution 1.245 0.881 0.584 1.633 sum -13.469 -11.379 -4.381 18.168 Atomic orbital electron populations 1.21757 0.94492 1.02525 1.01972 1.21434 0.96758 0.93937 1.02990 1.21677 0.89042 1.00157 1.03161 1.20552 0.95161 0.81306 0.90531 0.87985 1.87990 1.33001 1.74394 1.33677 1.22758 0.83290 0.96770 1.00134 1.21730 1.01732 1.01560 0.95102 1.27132 1.00462 1.01828 0.84425 1.74555 1.18132 0.93765 1.23598 1.85286 1.59108 1.30029 1.24954 1.29608 0.92910 0.95241 0.83482 1.20543 0.96621 0.92407 0.95690 1.18949 0.88762 0.96478 0.96246 1.21592 0.92393 1.16036 1.27452 0.90257 1.26014 0.97702 0.98625 0.97553 1.70125 1.03486 1.39588 1.44350 0.85312 0.78602 0.78496 0.78110 1.17696 1.20840 1.20759 1.71920 1.18923 1.05294 1.27811 0.91339 0.92417 0.92870 0.91319 0.90943 0.89873 0.91588 0.96155 0.90464 0.93364 0.89280 0.90311 0.86559 0.86586 0.98839 0.98601 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.11 -1.90 5.78 30.60 0.18 -1.73 16 3 C -0.10 -2.26 4.90 30.60 0.15 -2.11 16 4 C 0.18 5.07 2.65 29.85 0.08 5.15 16 5 H 0.10 2.53 7.89 -2.39 -0.02 2.51 16 6 O -0.37 -10.44 9.63 -148.98 -1.43 -11.87 16 7 C 0.05 1.17 6.45 71.98 0.46 1.63 16 8 C -0.14 -2.97 10.28 71.98 0.74 -2.23 16 9 C 0.14 4.80 6.82 138.47 0.94 5.74 16 10 N -0.39 -14.93 12.16 -60.36 -0.73 -15.67 16 11 O 0.06 2.40 11.31 74.87 0.85 3.25 16 12 C 0.21 7.99 7.77 88.38 0.69 8.68 16 13 C -0.01 -0.52 5.78 29.85 0.17 -0.35 16 14 C 0.03 1.71 4.95 29.85 0.15 1.86 16 15 C -0.54 -28.42 9.11 25.60 0.23 -28.19 16 16 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.94 -55.79 13.29 21.45 0.28 -55.50 16 19 Si 0.97 42.36 29.54 68.60 2.03 44.38 16 20 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 N -0.50 -19.37 11.55 -303.24 -3.50 -22.88 16 24 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.20 7.96 -2.39 -0.02 1.18 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.02 0.61 7.95 -2.39 -0.02 0.60 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 37 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 38 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 40 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 Total: -1.00 -65.35 342.50 3.46 -61.89 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.00 Total: 8.92 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.97 Total: -12.52 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -3.95 Total: -94.05 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.59 Total: -8.62 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -65.35 3.46 -61.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233296847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.699 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds