Wall clock time and date at job start Mon Mar 30 2020 07:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 C 1.53003 * 109.47113 * 175.00670 * 3 2 1 5 5 H 1.09004 * 109.47094 * 305.29999 * 4 3 2 6 6 O 1.42899 * 109.47300 * 65.29450 * 4 3 2 7 7 C 1.42898 * 114.00429 * 205.17927 * 6 4 3 8 8 C 1.50693 * 109.47134 * 185.29749 * 4 3 2 9 9 N 1.29947 * 126.29017 * 284.97065 * 8 4 3 10 10 O 1.21298 * 110.25423 * 179.72605 * 9 8 4 11 11 C 1.33644 * 109.81002 * 0.47060 * 10 9 8 12 12 C 1.50702 * 126.55148 * 179.79651 * 11 10 9 13 13 C 1.53000 * 109.46959 * 269.69281 * 12 11 10 14 14 H 1.09003 * 109.47363 * 304.99221 * 13 12 11 15 15 C 1.52994 * 109.47414 * 65.00304 * 13 12 11 16 16 C 1.50702 * 109.46736 * 185.00068 * 13 12 11 17 17 H 1.08002 * 119.99919 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00215 * 180.02562 * 16 13 12 19 19 N 1.31511 * 119.99946 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00292 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47158 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47191 * 119.99787 * 20 18 16 23 23 H 1.48500 * 109.47306 * 240.00063 * 20 18 16 24 24 N 1.31133 * 106.89697 * 359.54070 * 11 10 9 25 25 H 1.09002 * 109.47542 * 300.00066 * 1 2 3 26 26 H 1.09001 * 109.46776 * 60.00756 * 1 2 3 27 27 H 1.09005 * 109.46508 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47487 * 239.99569 * 2 1 3 29 29 H 1.09006 * 109.46925 * 119.99692 * 2 1 3 30 30 H 1.08994 * 109.47116 * 55.00597 * 3 2 1 31 31 H 1.09000 * 109.47198 * 295.00280 * 3 2 1 32 32 H 1.09001 * 109.46512 * 64.98140 * 7 6 4 33 33 H 1.08995 * 109.47410 * 184.97993 * 7 6 4 34 34 H 1.09000 * 109.47235 * 304.98454 * 7 6 4 35 35 H 1.08996 * 109.46893 * 149.69193 * 12 11 10 36 36 H 1.08998 * 109.46791 * 29.69103 * 12 11 10 37 37 H 1.08999 * 109.47245 * 59.99705 * 15 13 12 38 38 H 1.08994 * 109.47164 * 179.97438 * 15 13 12 39 39 H 1.09003 * 109.47012 * 299.99666 * 15 13 12 40 40 H 0.96998 * 120.00360 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4445 0.1256 5 1 3.8574 0.8756 1.0082 6 8 4.1393 0.8467 -1.0383 7 6 5.4343 0.2822 -0.8228 8 6 4.0562 2.8630 0.2564 9 7 4.1350 3.7408 -0.6985 10 8 4.5652 4.7906 -0.2693 11 6 4.8187 4.6757 1.0378 12 6 5.3666 5.7484 1.9435 13 6 6.8947 5.6727 1.9573 14 1 7.2061 4.6665 2.2377 15 6 7.4344 6.0043 0.5647 16 6 7.4375 6.6629 2.9553 17 1 6.7604 7.2842 3.5226 18 6 8.7987 6.7762 3.1435 19 7 9.6233 6.0200 2.4524 20 14 9.4717 8.0040 4.3800 21 1 8.3452 8.7283 5.0218 22 1 10.2530 7.2840 5.4175 23 1 10.3518 8.9763 3.6834 24 7 4.4944 3.4529 1.3829 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6054 1.9815 0.8418 31 1 1.7515 1.9299 -0.9313 32 1 5.3553 -0.5529 -0.1269 33 1 5.8386 -0.0720 -1.7710 34 1 6.0967 1.0410 -0.4062 35 1 4.9862 5.5998 2.9541 36 1 5.0546 6.7267 1.5780 37 1 7.1230 7.0106 0.2844 38 1 8.5230 5.9508 0.5747 39 1 7.0417 5.2882 -0.1572 40 1 10.5809 6.0994 2.5850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233298402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:59 Heat of formation + Delta-G solvation = -5.709763 kcal Electronic energy + Delta-G solvation = -20664.043191 eV Core-core repulsion = 17481.666007 eV Total energy + Delta-G solvation = -3182.377185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.11994 -38.66181 -35.77861 -35.18762 -34.69993 -32.59193 -30.83133 -29.61150 -26.67280 -26.42420 -25.26610 -24.97113 -23.04869 -21.54128 -20.87359 -19.68178 -17.66723 -17.21070 -16.80987 -16.25095 -15.54674 -15.40919 -14.90249 -14.65852 -13.98243 -13.63223 -13.54220 -13.32457 -12.85621 -12.54940 -12.22615 -11.98554 -11.77015 -11.70532 -11.37466 -11.26480 -11.22384 -11.06607 -10.94768 -10.78032 -10.67348 -10.54801 -10.24524 -10.05064 -9.97499 -9.92661 -9.15410 -8.97944 -8.43991 -6.08443 -4.16861 1.63014 2.57929 3.25729 3.33443 3.36051 3.40113 3.48876 3.88728 4.36549 4.54980 4.71177 4.79260 4.90171 5.09072 5.23357 5.27368 5.30973 5.45717 5.46014 5.54284 5.63144 5.68126 5.71487 5.91415 5.96021 6.03717 6.10199 6.15359 6.18081 6.40874 6.52155 6.80583 6.96608 7.01311 7.18236 7.60483 7.81195 8.00963 8.26382 8.62242 8.85966 9.48968 10.97869 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033684 B = 0.003779 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.045606 B = 7407.396850 C = 7626.978883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.109 4.109 4 C 0.187 3.813 5 H 0.091 0.909 6 O -0.368 6.368 7 C 0.027 3.973 8 C 0.129 3.871 9 N -0.375 5.375 10 O 0.072 5.928 11 C 0.216 3.784 12 C -0.027 4.027 13 C 0.050 3.950 14 H 0.034 0.966 15 C -0.141 4.141 16 C -0.517 4.517 17 H 0.061 0.939 18 C 0.063 3.937 19 N -0.887 5.887 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.494 5.494 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.032 0.968 38 H 0.086 0.914 39 H 0.003 0.997 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.690 -9.621 -4.138 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.147 4.147 4 C 0.127 3.873 5 H 0.108 0.892 6 O -0.285 6.285 7 C -0.069 4.069 8 C -0.145 4.145 9 N -0.084 5.084 10 O 0.013 5.987 11 C -0.003 4.003 12 C -0.066 4.066 13 C 0.031 3.969 14 H 0.052 0.948 15 C -0.199 4.199 16 C -0.555 4.555 17 H 0.080 0.920 18 C -0.139 4.139 19 N -0.525 5.525 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.229 5.229 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.883 -10.202 -4.903 17.149 hybrid contribution 0.880 0.821 0.899 1.503 sum -12.003 -9.381 -4.004 15.751 Atomic orbital electron populations 1.21766 0.95632 1.01622 1.01897 1.21469 0.95862 0.95774 1.02644 1.21677 0.90947 0.98423 1.03653 1.20256 0.93802 0.83346 0.89940 0.89161 1.87975 1.32607 1.74586 1.33300 1.22862 0.84360 0.97261 1.02429 1.26385 1.02069 1.00608 0.85396 1.74559 1.17223 0.93513 1.23120 1.85319 1.58673 1.29565 1.25097 1.29550 0.92391 0.95030 0.83309 1.20851 1.00243 0.91091 0.94426 1.18739 0.84883 0.98559 0.94741 0.94792 1.21887 1.04780 0.97490 0.95736 1.21064 0.91840 1.21009 1.21578 0.92029 1.24956 0.97026 0.95899 0.96010 1.69899 1.02984 1.39156 1.40506 0.86473 0.79052 0.81032 0.81071 1.19620 1.21002 1.20987 1.71905 1.18766 1.05278 1.26921 0.92724 0.92667 0.92646 0.91050 0.91916 0.90190 0.90484 0.93528 0.89254 0.93775 0.88222 0.89180 0.94864 0.89517 0.97763 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.13 5.78 -26.73 -0.15 -1.28 16 3 C -0.11 -1.28 4.90 -26.73 -0.13 -1.41 16 4 C 0.19 2.65 2.65 -27.89 -0.07 2.57 16 5 H 0.09 1.18 7.89 -51.93 -0.41 0.77 16 6 O -0.37 -5.29 9.99 -35.23 -0.35 -5.64 16 7 C 0.03 0.34 10.80 101.05 1.09 1.43 16 8 C 0.13 2.30 6.82 -156.37 -1.07 1.24 16 9 N -0.37 -7.18 12.16 30.90 0.38 -6.81 16 10 O 0.07 1.40 10.77 18.10 0.19 1.59 16 11 C 0.22 4.19 6.91 -13.06 -0.09 4.10 16 12 C -0.03 -0.52 5.26 -27.88 -0.15 -0.67 16 13 C 0.05 1.20 2.29 -91.77 -0.21 0.99 16 14 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.14 -3.34 8.78 37.15 0.33 -3.01 16 16 C -0.52 -13.33 8.56 -34.44 -0.29 -13.62 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -24.71 11.32 55.43 0.63 -24.09 16 20 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 N -0.49 -9.56 11.55 -9.87 -0.11 -9.67 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.69 7.96 -51.93 -0.41 0.28 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.63 7.95 -51.93 -0.41 0.22 16 35 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 39 H 0.00 0.08 6.95 -51.93 -0.36 -0.28 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -28.96 335.19 -6.24 -35.20 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.53 Total: -2.13 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.48 Total: -8.93 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.89 Total: -40.56 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.16 Total: -4.05 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.96 -6.24 -35.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233298402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.491 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds