Wall clock time and date at job start Mon Mar 30 2020 07:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46803 * 2 1 4 4 C 1.53003 * 109.47113 * 175.00670 * 3 2 1 5 5 H 1.09004 * 109.47094 * 305.29999 * 4 3 2 6 6 O 1.42899 * 109.47300 * 65.29450 * 4 3 2 7 7 C 1.42898 * 114.00429 * 205.17927 * 6 4 3 8 8 C 1.50693 * 109.47134 * 185.29749 * 4 3 2 9 9 N 1.29947 * 126.29017 * 284.97065 * 8 4 3 10 10 O 1.21298 * 110.25423 * 179.72605 * 9 8 4 11 11 C 1.33644 * 109.81002 * 0.47060 * 10 9 8 12 12 C 1.50702 * 126.55148 * 179.79651 * 11 10 9 13 13 C 1.53000 * 109.46959 * 269.69281 * 12 11 10 14 14 H 1.09003 * 109.47363 * 304.99221 * 13 12 11 15 15 C 1.52994 * 109.47414 * 65.00304 * 13 12 11 16 16 C 1.50702 * 109.46736 * 185.00068 * 13 12 11 17 17 H 1.08002 * 119.99919 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00215 * 180.02562 * 16 13 12 19 19 N 1.31511 * 119.99946 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00292 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47158 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47191 * 119.99787 * 20 18 16 23 23 H 1.48500 * 109.47306 * 240.00063 * 20 18 16 24 24 N 1.31133 * 106.89697 * 359.54070 * 11 10 9 25 25 H 1.09002 * 109.47542 * 300.00066 * 1 2 3 26 26 H 1.09001 * 109.46776 * 60.00756 * 1 2 3 27 27 H 1.09005 * 109.46508 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47487 * 239.99569 * 2 1 3 29 29 H 1.09006 * 109.46925 * 119.99692 * 2 1 3 30 30 H 1.08994 * 109.47116 * 55.00597 * 3 2 1 31 31 H 1.09000 * 109.47198 * 295.00280 * 3 2 1 32 32 H 1.09001 * 109.46512 * 64.98140 * 7 6 4 33 33 H 1.08995 * 109.47410 * 184.97993 * 7 6 4 34 34 H 1.09000 * 109.47235 * 304.98454 * 7 6 4 35 35 H 1.08996 * 109.46893 * 149.69193 * 12 11 10 36 36 H 1.08998 * 109.46791 * 29.69103 * 12 11 10 37 37 H 1.08999 * 109.47245 * 59.99705 * 15 13 12 38 38 H 1.08994 * 109.47164 * 179.97438 * 15 13 12 39 39 H 1.09003 * 109.47012 * 299.99666 * 15 13 12 40 40 H 0.96998 * 120.00360 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4445 0.1256 5 1 3.8574 0.8756 1.0082 6 8 4.1393 0.8467 -1.0383 7 6 5.4343 0.2822 -0.8228 8 6 4.0562 2.8630 0.2564 9 7 4.1350 3.7408 -0.6985 10 8 4.5652 4.7906 -0.2693 11 6 4.8187 4.6757 1.0378 12 6 5.3666 5.7484 1.9435 13 6 6.8947 5.6727 1.9573 14 1 7.2061 4.6665 2.2377 15 6 7.4344 6.0043 0.5647 16 6 7.4375 6.6629 2.9553 17 1 6.7604 7.2842 3.5226 18 6 8.7987 6.7762 3.1435 19 7 9.6233 6.0200 2.4524 20 14 9.4717 8.0040 4.3800 21 1 8.3452 8.7283 5.0218 22 1 10.2530 7.2840 5.4175 23 1 10.3518 8.9763 3.6834 24 7 4.4944 3.4529 1.3829 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6054 1.9815 0.8418 31 1 1.7515 1.9299 -0.9313 32 1 5.3553 -0.5529 -0.1269 33 1 5.8386 -0.0720 -1.7710 34 1 6.0967 1.0410 -0.4062 35 1 4.9862 5.5998 2.9541 36 1 5.0546 6.7267 1.5780 37 1 7.1230 7.0106 0.2844 38 1 8.5230 5.9508 0.5747 39 1 7.0417 5.2882 -0.1572 40 1 10.5809 6.0994 2.5850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233298402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:58 Heat of formation + Delta-G solvation = -23.694842 kcal Electronic energy + Delta-G solvation = -20664.823083 eV Core-core repulsion = 17481.666007 eV Total energy + Delta-G solvation = -3183.157076 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.60567 -39.75679 -37.49204 -36.60418 -35.69545 -34.31349 -32.51170 -30.66779 -28.35256 -27.44008 -27.25590 -26.08943 -24.52786 -22.67788 -22.07208 -21.35756 -19.18835 -18.67377 -18.27077 -17.79406 -16.78305 -16.57724 -16.41549 -15.75462 -15.53848 -15.20506 -14.69306 -14.52485 -14.30754 -13.62877 -13.54632 -13.33200 -13.18204 -13.07778 -12.85621 -12.79526 -12.50708 -12.43649 -12.23075 -12.15282 -12.04173 -11.98765 -11.74832 -11.64732 -11.53760 -11.10691 -10.93961 -10.76753 -10.46486 -8.09831 -6.24654 0.12580 1.12554 1.46280 1.48873 1.59747 1.87470 2.34575 2.46957 2.65476 3.17570 3.20466 3.70223 3.80897 4.04672 4.20837 4.21419 4.32525 4.38818 4.41903 4.48604 4.59172 4.63960 4.69214 4.72208 4.79957 4.84620 4.89407 4.98801 5.02562 5.08485 5.21075 5.29887 5.30068 5.44551 5.60001 5.83193 5.90092 6.03270 6.27236 6.86607 7.13564 7.45045 8.96349 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033684 B = 0.003779 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.045606 B = 7407.396850 C = 7626.978883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.103 4.103 4 C 0.183 3.817 5 H 0.103 0.897 6 O -0.378 6.378 7 C 0.024 3.976 8 C 0.134 3.866 9 N -0.390 5.390 10 O 0.064 5.936 11 C 0.212 3.788 12 C -0.016 4.016 13 C 0.051 3.949 14 H -0.004 1.004 15 C -0.130 4.130 16 C -0.527 4.527 17 H 0.073 0.927 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.960 3.040 21 H -0.258 1.258 22 H -0.286 1.286 23 H -0.284 1.284 24 N -0.506 5.506 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.016 0.984 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.008 0.992 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.982 -9.793 -3.547 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.141 4.141 4 C 0.123 3.877 5 H 0.121 0.879 6 O -0.295 6.295 7 C -0.072 4.072 8 C -0.140 4.140 9 N -0.102 5.102 10 O 0.008 5.992 11 C -0.007 4.007 12 C -0.055 4.055 13 C 0.031 3.969 14 H 0.015 0.985 15 C -0.188 4.188 16 C -0.565 4.565 17 H 0.091 0.909 18 C -0.188 4.188 19 N -0.561 5.561 20 Si 0.786 3.214 21 H -0.182 1.182 22 H -0.212 1.212 23 H -0.210 1.210 24 N -0.241 5.241 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.035 0.965 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.187 -10.358 -4.315 18.088 hybrid contribution 1.289 0.805 0.681 1.665 sum -12.898 -9.553 -3.634 16.457 Atomic orbital electron populations 1.21758 0.94512 1.02523 1.01975 1.21438 0.96759 0.93964 1.03001 1.21679 0.89166 1.00128 1.03153 1.20598 0.95166 0.81446 0.90498 0.87911 1.87969 1.33321 1.74524 1.33636 1.23014 0.83103 0.97078 1.04025 1.27100 1.00597 1.01792 0.84496 1.74547 1.18202 0.93780 1.23648 1.85298 1.58967 1.29890 1.25018 1.29523 0.92614 0.95153 0.83425 1.20668 0.97032 0.92379 0.95426 1.18600 0.87985 0.96064 0.94252 0.98537 1.21726 1.02775 0.98246 0.96031 1.21470 0.92204 1.21095 1.21746 0.90896 1.25784 0.97583 0.97638 0.97788 1.70047 1.03119 1.40818 1.42092 0.85463 0.78518 0.78742 0.78675 1.18213 1.21194 1.20989 1.71917 1.19051 1.05409 1.27765 0.92423 0.92862 0.91343 0.91309 0.90924 0.89910 0.91591 0.91030 0.87454 0.96469 0.86994 0.86851 0.93712 0.92442 0.97305 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.11 -1.91 5.78 30.59 0.18 -1.74 16 3 C -0.10 -2.28 4.90 30.60 0.15 -2.13 16 4 C 0.18 5.00 2.65 29.85 0.08 5.08 16 5 H 0.10 2.53 7.89 -2.38 -0.02 2.51 16 6 O -0.38 -10.45 9.99 -148.98 -1.49 -11.94 16 7 C 0.02 0.56 10.80 113.37 1.22 1.78 16 8 C 0.13 4.72 6.82 138.46 0.94 5.66 16 9 N -0.39 -14.87 12.16 -60.32 -0.73 -15.60 16 10 O 0.06 2.46 10.77 74.83 0.81 3.27 16 11 C 0.21 8.11 6.91 88.38 0.61 8.72 16 12 C -0.02 -0.61 5.26 29.85 0.16 -0.45 16 13 C 0.05 2.42 2.29 -11.54 -0.03 2.39 16 14 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 15 C -0.13 -6.19 8.78 71.98 0.63 -5.56 16 16 C -0.53 -26.88 8.56 25.60 0.22 -26.66 16 17 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 18 C 0.01 0.57 5.30 84.66 0.45 1.01 16 19 N -0.92 -52.17 11.32 21.45 0.24 -51.93 16 20 Si 0.96 41.60 29.54 68.60 2.03 43.63 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 22 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 N -0.51 -19.36 11.55 -303.18 -3.50 -22.86 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.07 1.20 7.96 -2.39 -0.02 1.18 16 29 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.02 0.48 7.95 -2.39 -0.02 0.46 16 35 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 36 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 39 H 0.01 0.37 6.95 -2.39 -0.02 0.35 16 40 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -61.72 335.19 3.69 -58.03 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.01 Total: 10.68 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 5.33 Total: -13.28 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -3.99 Total: -90.39 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.68 Total: -8.67 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -61.72 3.69 -58.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233298402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.333 kcal (2) G-P(sol) polarization free energy of solvation -61.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds