Wall clock time and date at job start Mon Mar 30 2020 07:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47271 * 2 1 4 4 C 1.52998 * 109.46974 * 175.01252 * 3 2 1 5 5 H 1.09003 * 109.47173 * 305.29952 * 4 3 2 6 6 O 1.42898 * 109.47470 * 65.29782 * 4 3 2 7 7 C 1.42903 * 114.00136 * 205.18135 * 6 4 3 8 8 C 1.50700 * 109.46960 * 185.29864 * 4 3 2 9 9 N 1.29952 * 126.28838 * 284.97078 * 8 4 3 10 10 O 1.21301 * 110.25221 * 179.72902 * 9 8 4 11 11 C 1.33644 * 109.80726 * 0.46618 * 10 9 8 12 12 C 1.50705 * 126.54768 * 179.80279 * 11 10 9 13 13 H 1.09000 * 109.46913 * 179.69438 * 12 11 10 14 14 C 1.52995 * 109.47417 * 59.68950 * 12 11 10 15 15 C 1.53004 * 109.47074 * 299.68881 * 12 11 10 16 16 C 1.50699 * 109.46923 * 185.00070 * 15 12 11 17 17 H 1.07995 * 120.00433 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99745 * 180.02562 * 16 15 12 19 19 N 1.31511 * 119.99969 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00097 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47079 * 90.00150 * 20 18 16 22 22 H 1.48498 * 109.47374 * 210.00152 * 20 18 16 23 23 H 1.48504 * 109.46862 * 330.00210 * 20 18 16 24 24 N 1.31127 * 106.90182 * 359.54517 * 11 10 9 25 25 H 1.09001 * 109.47321 * 59.99593 * 1 2 3 26 26 H 1.09000 * 109.47023 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46561 * 300.00114 * 1 2 3 28 28 H 1.09000 * 109.46914 * 239.99972 * 2 1 3 29 29 H 1.09001 * 109.47321 * 120.00407 * 2 1 3 30 30 H 1.09000 * 109.47285 * 55.01115 * 3 2 1 31 31 H 1.09002 * 109.46915 * 295.00909 * 3 2 1 32 32 H 1.09003 * 109.46845 * 184.97881 * 7 6 4 33 33 H 1.08995 * 109.46728 * 304.97436 * 7 6 4 34 34 H 1.08994 * 109.46905 * 64.97756 * 7 6 4 35 35 H 1.09004 * 109.47266 * 300.00577 * 14 12 11 36 36 H 1.09002 * 109.46669 * 59.99855 * 14 12 11 37 37 H 1.08992 * 109.47425 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.46732 * 65.00145 * 15 12 11 39 39 H 1.08995 * 109.47217 * 305.00422 * 15 12 11 40 40 H 0.97009 * 120.00109 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4442 0.1254 5 1 3.8575 0.8753 1.0080 6 8 4.1393 0.8465 -1.0385 7 6 5.4343 0.2819 -0.8231 8 6 4.0565 2.8627 0.2563 9 7 4.1353 3.7406 -0.6986 10 8 4.5656 4.7904 -0.2694 11 6 4.8192 4.6753 1.0377 12 6 5.3671 5.7480 1.9434 13 1 5.4598 5.3559 2.9562 14 6 4.4176 6.9477 1.9458 15 6 6.7430 6.1877 1.4388 16 6 7.3441 7.1700 2.4108 17 1 6.7995 7.4523 3.2997 18 6 8.5894 7.7086 2.1652 19 7 9.1142 8.5655 3.0136 20 14 9.5318 7.2200 0.6281 21 1 9.1866 8.1467 -0.4797 22 1 10.9903 7.2923 0.8977 23 1 9.1675 5.8324 0.2444 24 7 4.4948 3.4526 1.3827 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6056 1.9815 0.8419 31 1 1.7515 1.9298 -0.9313 32 1 5.8385 -0.0724 -1.7715 33 1 6.0967 1.0406 -0.4066 34 1 5.3552 -0.5533 -0.1272 35 1 4.3248 7.3397 0.9329 36 1 3.4374 6.6344 2.3052 37 1 4.8137 7.7233 2.6011 38 1 6.6378 6.6607 0.4624 39 1 7.3936 5.3174 1.3527 40 1 9.9902 8.9447 2.8407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233298509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:15 Heat of formation + Delta-G solvation = -4.873543 kcal Electronic energy + Delta-G solvation = -20623.203258 eV Core-core repulsion = 17440.862335 eV Total energy + Delta-G solvation = -3182.340923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.27640 -38.77582 -36.06254 -35.34354 -34.80010 -32.58108 -31.24161 -29.68069 -27.76068 -26.58498 -25.14774 -24.61216 -23.01593 -21.87872 -21.25315 -19.58792 -17.72830 -17.30217 -17.08788 -16.63469 -15.67332 -15.51274 -14.98363 -14.76010 -14.17584 -13.77621 -13.66343 -13.49008 -12.88826 -12.64152 -12.35493 -12.20633 -12.15824 -11.83967 -11.60541 -11.40919 -11.29716 -11.24708 -11.13249 -10.97286 -10.84367 -10.71372 -10.28538 -10.23853 -10.10902 -9.91926 -9.44444 -9.31953 -8.64011 -6.14627 -4.14716 1.47560 2.41818 3.22593 3.26052 3.33946 3.36103 3.37379 3.74920 4.36788 4.38377 4.60669 4.70261 4.83121 4.99063 5.15659 5.18458 5.19510 5.34136 5.37048 5.42424 5.52344 5.56433 5.61706 5.64808 5.69179 5.84944 5.85787 5.96983 6.08771 6.13217 6.18118 6.43023 6.48255 6.78698 6.85351 6.98323 7.12555 7.60220 8.37354 8.46791 8.87280 9.46234 10.97734 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029824 B = 0.004153 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.625588 B = 6740.250888 C = 7308.513600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.109 4.109 4 C 0.187 3.813 5 H 0.091 0.909 6 O -0.367 6.367 7 C 0.027 3.973 8 C 0.129 3.871 9 N -0.372 5.372 10 O 0.077 5.923 11 C 0.213 3.787 12 C 0.009 3.991 13 H 0.112 0.888 14 C -0.137 4.137 15 C -0.008 4.008 16 C -0.521 4.521 17 H 0.080 0.920 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.874 3.126 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.267 1.267 24 N -0.494 5.494 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.024 0.976 39 H 0.021 0.979 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.951 -15.099 -5.409 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.148 4.148 4 C 0.127 3.873 5 H 0.109 0.891 6 O -0.284 6.284 7 C -0.069 4.069 8 C -0.145 4.145 9 N -0.081 5.081 10 O 0.018 5.982 11 C -0.007 4.007 12 C -0.011 4.011 13 H 0.130 0.870 14 C -0.195 4.195 15 C -0.046 4.046 16 C -0.559 4.559 17 H 0.098 0.902 18 C -0.129 4.129 19 N -0.535 5.535 20 Si 0.701 3.299 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.192 1.192 24 N -0.228 5.228 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.039 0.961 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.171 -15.546 -6.120 21.275 hybrid contribution 1.040 -0.006 -0.492 1.150 sum -12.131 -15.552 -6.612 20.803 Atomic orbital electron populations 1.21768 0.95560 1.01672 1.01946 1.21467 0.95939 0.95685 1.02632 1.21687 0.90812 0.98522 1.03745 1.20276 0.93928 0.83185 0.89951 0.89097 1.87991 1.32574 1.74551 1.33274 1.22862 0.84357 0.97188 1.02500 1.26429 1.02076 1.00670 0.85335 1.74602 1.16971 0.93371 1.23109 1.85306 1.58462 1.29504 1.24910 1.29651 0.92911 0.94643 0.83482 1.20136 0.97186 0.88679 0.95137 0.87026 1.21802 0.96848 0.97501 1.03334 1.19719 0.89759 0.97340 0.97770 1.20913 1.02679 1.24241 1.08030 0.90168 1.24936 0.97222 0.94451 0.96316 1.69886 1.17560 1.29839 1.36203 0.86863 0.79322 0.79742 0.83927 1.19974 1.21188 1.19181 1.71915 1.18681 1.05295 1.26957 0.92635 0.92604 0.92694 0.91048 0.91918 0.90127 0.90425 0.89205 0.93962 0.93458 0.92338 0.93810 0.89098 0.95772 0.96082 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.05 5.78 -26.73 -0.15 -1.20 16 3 C -0.11 -1.21 4.90 -26.73 -0.13 -1.34 16 4 C 0.19 2.47 2.65 -27.88 -0.07 2.39 16 5 H 0.09 1.08 7.89 -51.93 -0.41 0.67 16 6 O -0.37 -4.94 9.99 -35.23 -0.35 -5.29 16 7 C 0.03 0.30 10.80 101.05 1.09 1.40 16 8 C 0.13 2.17 6.82 -156.37 -1.07 1.10 16 9 N -0.37 -6.85 12.16 30.90 0.38 -6.47 16 10 O 0.08 1.45 11.31 18.10 0.20 1.65 16 11 C 0.21 3.94 7.02 -13.06 -0.09 3.85 16 12 C 0.01 0.17 2.81 -91.77 -0.26 -0.09 16 13 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 14 C -0.14 -2.28 8.98 37.15 0.33 -1.95 16 15 C -0.01 -0.17 3.50 -27.88 -0.10 -0.27 16 16 C -0.52 -13.69 8.96 -34.44 -0.31 -14.00 16 17 H 0.08 2.21 7.30 -52.49 -0.38 1.82 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -26.39 13.96 55.43 0.77 -25.62 16 20 Si 0.87 21.07 27.47 -169.99 -4.67 16.40 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 N -0.49 -8.95 11.55 -9.86 -0.11 -9.07 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.07 0.65 7.96 -51.93 -0.41 0.23 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.54 7.95 -51.93 -0.41 0.13 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.61 6.95 -51.93 -0.36 1.25 16 38 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 39 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -29.90 335.49 -5.78 -35.67 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -6.56 Total: -3.37 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.49 Total: -8.97 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 1.04 Total: -41.16 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.15 Total: -3.63 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.90 -5.78 -35.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233298509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.799 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds