Wall clock time and date at job start Mon Mar 30 2020 07:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47271 * 2 1 4 4 C 1.52998 * 109.46974 * 175.01252 * 3 2 1 5 5 H 1.09003 * 109.47173 * 305.29952 * 4 3 2 6 6 O 1.42898 * 109.47470 * 65.29782 * 4 3 2 7 7 C 1.42903 * 114.00136 * 205.18135 * 6 4 3 8 8 C 1.50700 * 109.46960 * 185.29864 * 4 3 2 9 9 N 1.29952 * 126.28838 * 284.97078 * 8 4 3 10 10 O 1.21301 * 110.25221 * 179.72902 * 9 8 4 11 11 C 1.33644 * 109.80726 * 0.46618 * 10 9 8 12 12 C 1.50705 * 126.54768 * 179.80279 * 11 10 9 13 13 H 1.09000 * 109.46913 * 179.69438 * 12 11 10 14 14 C 1.52995 * 109.47417 * 59.68950 * 12 11 10 15 15 C 1.53004 * 109.47074 * 299.68881 * 12 11 10 16 16 C 1.50699 * 109.46923 * 185.00070 * 15 12 11 17 17 H 1.07995 * 120.00433 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99745 * 180.02562 * 16 15 12 19 19 N 1.31511 * 119.99969 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00097 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47079 * 90.00150 * 20 18 16 22 22 H 1.48498 * 109.47374 * 210.00152 * 20 18 16 23 23 H 1.48504 * 109.46862 * 330.00210 * 20 18 16 24 24 N 1.31127 * 106.90182 * 359.54517 * 11 10 9 25 25 H 1.09001 * 109.47321 * 59.99593 * 1 2 3 26 26 H 1.09000 * 109.47023 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46561 * 300.00114 * 1 2 3 28 28 H 1.09000 * 109.46914 * 239.99972 * 2 1 3 29 29 H 1.09001 * 109.47321 * 120.00407 * 2 1 3 30 30 H 1.09000 * 109.47285 * 55.01115 * 3 2 1 31 31 H 1.09002 * 109.46915 * 295.00909 * 3 2 1 32 32 H 1.09003 * 109.46845 * 184.97881 * 7 6 4 33 33 H 1.08995 * 109.46728 * 304.97436 * 7 6 4 34 34 H 1.08994 * 109.46905 * 64.97756 * 7 6 4 35 35 H 1.09004 * 109.47266 * 300.00577 * 14 12 11 36 36 H 1.09002 * 109.46669 * 59.99855 * 14 12 11 37 37 H 1.08992 * 109.47425 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.46732 * 65.00145 * 15 12 11 39 39 H 1.08995 * 109.47217 * 305.00422 * 15 12 11 40 40 H 0.97009 * 120.00109 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4442 0.1254 5 1 3.8575 0.8753 1.0080 6 8 4.1393 0.8465 -1.0385 7 6 5.4343 0.2819 -0.8231 8 6 4.0565 2.8627 0.2563 9 7 4.1353 3.7406 -0.6986 10 8 4.5656 4.7904 -0.2694 11 6 4.8192 4.6753 1.0377 12 6 5.3671 5.7480 1.9434 13 1 5.4598 5.3559 2.9562 14 6 4.4176 6.9477 1.9458 15 6 6.7430 6.1877 1.4388 16 6 7.3441 7.1700 2.4108 17 1 6.7995 7.4523 3.2997 18 6 8.5894 7.7086 2.1652 19 7 9.1142 8.5655 3.0136 20 14 9.5318 7.2200 0.6281 21 1 9.1866 8.1467 -0.4797 22 1 10.9903 7.2923 0.8977 23 1 9.1675 5.8324 0.2444 24 7 4.4948 3.4526 1.3827 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6056 1.9815 0.8419 31 1 1.7515 1.9298 -0.9313 32 1 5.8385 -0.0724 -1.7715 33 1 6.0967 1.0406 -0.4066 34 1 5.3552 -0.5533 -0.1272 35 1 4.3248 7.3397 0.9329 36 1 3.4374 6.6344 2.3052 37 1 4.8137 7.7233 2.6011 38 1 6.6378 6.6607 0.4624 39 1 7.3936 5.3174 1.3527 40 1 9.9902 8.9447 2.8407 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233298509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:15 Heat of formation + Delta-G solvation = -24.274997 kcal Electronic energy + Delta-G solvation = -20624.044569 eV Core-core repulsion = 17440.862335 eV Total energy + Delta-G solvation = -3183.182234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.68103 -39.77555 -37.63969 -36.64868 -35.69355 -34.52212 -32.70152 -30.66241 -29.54650 -27.46235 -26.28445 -26.07125 -24.52196 -23.27492 -22.13561 -21.02565 -19.19421 -19.10089 -18.45091 -17.79122 -16.82463 -16.50108 -16.43199 -16.00933 -15.69066 -15.33960 -14.74182 -14.52631 -14.32298 -13.96623 -13.69736 -13.33520 -13.22483 -13.15087 -12.98633 -12.79738 -12.68609 -12.43540 -12.31818 -12.10524 -12.01878 -11.89794 -11.84835 -11.71902 -11.54901 -11.36114 -11.10912 -10.90602 -10.75940 -8.27801 -6.30971 0.04896 1.05546 1.35310 1.38132 1.46667 1.77666 2.28648 2.35227 2.61340 3.07023 3.08365 3.64873 3.78928 3.98451 4.09110 4.16159 4.18919 4.21340 4.32241 4.39347 4.45654 4.61948 4.66761 4.70583 4.72033 4.76660 4.84949 4.92474 4.98331 5.01375 5.16243 5.20668 5.29564 5.29818 5.44008 5.44588 5.59537 5.89693 6.25788 6.75618 7.06166 7.32814 8.87512 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029824 B = 0.004153 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.625588 B = 6740.250888 C = 7308.513600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.105 4.105 4 C 0.184 3.816 5 H 0.107 0.893 6 O -0.379 6.379 7 C 0.023 3.977 8 C 0.136 3.864 9 N -0.388 5.388 10 O 0.066 5.934 11 C 0.210 3.790 12 C 0.016 3.984 13 H 0.113 0.887 14 C -0.131 4.131 15 C -0.004 4.004 16 C -0.516 4.516 17 H 0.058 0.942 18 C 0.017 3.983 19 N -0.942 5.942 20 Si 0.932 3.068 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.259 1.259 24 N -0.500 5.500 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.014 0.986 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.905 -16.975 -6.286 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.143 4.143 4 C 0.124 3.876 5 H 0.125 0.875 6 O -0.296 6.296 7 C -0.073 4.073 8 C -0.138 4.138 9 N -0.099 5.099 10 O 0.010 5.990 11 C -0.010 4.010 12 C -0.004 4.004 13 H 0.131 0.869 14 C -0.189 4.189 15 C -0.042 4.042 16 C -0.554 4.554 17 H 0.076 0.924 18 C -0.181 4.181 19 N -0.582 5.582 20 Si 0.757 3.243 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.183 1.183 24 N -0.234 5.234 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.046 0.954 39 H 0.032 0.968 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.134 -17.416 -7.007 23.499 hybrid contribution 1.293 0.530 -0.176 1.409 sum -12.841 -16.887 -7.183 22.397 Atomic orbital electron populations 1.21765 0.94650 1.02504 1.01942 1.21433 0.96657 0.93967 1.03053 1.21689 0.89344 1.00127 1.03139 1.20610 0.95056 0.81323 0.90655 0.87508 1.87985 1.33462 1.74496 1.33609 1.23035 0.83061 0.97188 1.04046 1.27150 1.00480 1.01795 0.84408 1.74601 1.17986 0.93625 1.23696 1.85293 1.58848 1.29941 1.24886 1.29467 0.93305 0.94712 0.83502 1.19937 0.95760 0.89667 0.95027 0.86913 1.21748 0.97523 0.96199 1.03456 1.19598 0.91613 0.96019 0.96998 1.21179 1.02340 1.24135 1.07771 0.92431 1.25728 0.98488 0.94658 0.99229 1.70010 1.18245 1.31631 1.38350 0.85935 0.77985 0.79858 0.80566 1.19038 1.20991 1.18305 1.71929 1.18801 1.05116 1.27584 0.92947 0.91367 0.92440 0.91304 0.90786 0.89911 0.91693 0.87591 0.96077 0.90974 0.91867 0.91242 0.90492 0.95355 0.96769 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.11 -1.72 5.78 30.59 0.18 -1.54 16 3 C -0.10 -2.13 4.90 30.59 0.15 -1.98 16 4 C 0.18 4.51 2.65 29.85 0.08 4.59 16 5 H 0.11 2.27 7.89 -2.39 -0.02 2.25 16 6 O -0.38 -9.47 9.99 -148.98 -1.49 -10.96 16 7 C 0.02 0.46 10.80 113.37 1.22 1.68 16 8 C 0.14 4.38 6.82 138.46 0.94 5.33 16 9 N -0.39 -13.89 12.16 -60.29 -0.73 -14.62 16 10 O 0.07 2.42 11.31 74.82 0.85 3.26 16 11 C 0.21 7.53 7.02 88.38 0.62 8.15 16 12 C 0.02 0.60 2.81 -11.54 -0.03 0.57 16 13 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 14 C -0.13 -4.24 8.98 71.98 0.65 -3.59 16 15 C 0.00 -0.18 3.50 29.85 0.10 -0.07 16 16 C -0.52 -27.32 8.96 25.60 0.23 -27.09 16 17 H 0.06 3.24 7.30 -2.91 -0.02 3.22 16 18 C 0.02 0.94 5.47 84.66 0.46 1.41 16 19 N -0.94 -56.35 13.96 21.45 0.30 -56.05 16 20 Si 0.93 43.15 27.47 68.60 1.88 45.04 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.26 -11.53 6.54 99.48 0.65 -10.88 16 24 N -0.50 -17.39 11.55 -303.16 -3.50 -20.90 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.07 1.09 7.96 -2.39 -0.02 1.07 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.02 0.50 7.95 -2.39 -0.02 0.49 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 2.71 6.95 -2.39 -0.02 2.69 16 38 H 0.03 1.23 7.57 -2.39 -0.02 1.22 16 39 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 40 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -63.31 335.49 3.58 -59.73 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.95 Total: 8.27 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.32 Total: -13.79 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -3.94 Total: -91.56 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.64 Total: -7.69 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.04 kcal Total: -63.31 3.58 -59.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233298509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.459 kcal (2) G-P(sol) polarization free energy of solvation -63.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds