Wall clock time and date at job start Mon Mar 30 2020 07:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46743 * 2 1 4 4 C 1.53006 * 109.46889 * 176.12202 * 3 2 1 5 5 H 1.08996 * 109.46884 * 54.58277 * 4 3 2 6 6 O 1.42903 * 109.46908 * 294.58159 * 4 3 2 7 7 C 1.42895 * 113.99765 * 151.97746 * 6 4 3 8 8 C 1.52999 * 109.47058 * 175.38708 * 7 6 4 9 9 C 1.50698 * 109.46917 * 174.58260 * 4 3 2 10 10 N 1.29952 * 126.28761 * 75.02584 * 9 4 3 11 11 O 1.21298 * 110.24977 * 179.97438 * 10 9 4 12 12 C 1.33638 * 109.81422 * 359.97438 * 11 10 9 13 13 C 1.50703 * 126.55321 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47183 * 269.97749 * 13 12 11 15 15 C 1.50698 * 109.47284 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99731 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31505 * 119.99834 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99588 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47103 * 90.00493 * 19 17 15 21 21 H 1.48511 * 109.46637 * 210.00146 * 19 17 15 22 22 H 1.48493 * 109.47502 * 329.99898 * 19 17 15 23 23 N 1.31126 * 106.89794 * 359.77014 * 12 11 10 24 24 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47591 * 300.00144 * 1 2 3 26 26 H 1.09007 * 109.47128 * 60.00250 * 1 2 3 27 27 H 1.08995 * 109.46934 * 240.00211 * 2 1 3 28 28 H 1.08995 * 109.46720 * 119.99852 * 2 1 3 29 29 H 1.08998 * 109.47647 * 56.12361 * 3 2 1 30 30 H 1.09001 * 109.47137 * 296.12074 * 3 2 1 31 31 H 1.09008 * 109.47369 * 295.38842 * 7 6 4 32 32 H 1.09003 * 109.47312 * 55.38963 * 7 6 4 33 33 H 1.08998 * 109.46813 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47492 * 299.99892 * 8 7 6 35 35 H 1.09003 * 109.46851 * 59.99972 * 8 7 6 36 36 H 1.09002 * 109.47024 * 29.97718 * 13 12 11 37 37 H 1.08995 * 109.47102 * 149.97476 * 13 12 11 38 38 H 1.09002 * 109.46614 * 300.00083 * 14 13 12 39 39 H 1.09003 * 109.46746 * 59.99611 * 14 13 12 40 40 H 0.97008 * 120.00329 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5669 1.4436 0.0976 5 1 3.9824 0.8296 -0.7014 6 8 3.9637 0.9113 1.3630 7 6 5.2476 0.2841 1.3528 8 6 5.6174 -0.1438 2.7744 9 6 4.0776 2.8551 -0.0361 10 7 4.0201 3.7831 0.8718 11 8 4.5175 4.8084 0.4563 12 6 4.9533 4.6262 -0.7939 13 6 5.6319 5.6509 -1.6661 14 6 4.5778 6.4148 -2.4700 15 6 5.2563 7.4398 -3.3417 16 1 6.3318 7.5365 -3.3244 17 6 4.5040 8.2536 -4.1622 18 7 3.1945 8.1354 -4.1836 19 14 5.3453 9.5236 -5.2432 20 1 5.6700 8.9167 -6.5590 21 1 4.4381 10.6824 -5.4429 22 1 6.5961 9.9817 -4.5871 23 7 4.6826 3.3840 -1.1147 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6210 1.9760 0.8532 30 1 1.7344 1.9359 -0.9227 31 1 5.2187 -0.5924 0.7054 32 1 5.9924 0.9871 0.9797 33 1 6.5966 -0.6226 2.7666 34 1 5.6463 0.7326 3.4218 35 1 4.8726 -0.8467 3.1476 36 1 6.1883 6.3491 -1.0407 37 1 6.3172 5.1496 -2.3495 38 1 4.0214 5.7165 -3.0953 39 1 3.8924 6.9160 -1.7865 40 1 2.6651 8.7082 -4.7605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233360462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:55 Heat of formation + Delta-G solvation = -12.096048 kcal Electronic energy + Delta-G solvation = -20292.396705 eV Core-core repulsion = 17109.742590 eV Total energy + Delta-G solvation = -3182.654115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.14135 -38.81208 -35.61092 -35.03674 -34.27696 -32.56288 -31.52313 -30.18027 -29.00478 -25.85689 -24.99360 -23.19320 -23.00751 -21.84609 -21.26108 -20.26838 -17.69757 -17.24948 -16.94829 -16.37042 -15.87843 -15.12932 -14.88587 -14.56101 -14.27754 -14.07460 -13.44192 -13.24773 -12.90370 -12.45459 -12.33194 -12.22960 -12.06892 -11.90834 -11.62994 -11.55072 -11.31964 -11.12998 -11.00942 -10.91057 -10.75212 -10.72261 -10.57599 -10.15018 -10.03100 -9.96445 -9.34836 -9.18885 -8.46422 -6.10653 -4.15497 1.60052 2.55304 3.28005 3.32534 3.34029 3.35793 3.39288 3.87523 4.37886 4.50188 4.71538 4.80251 4.87852 4.94611 4.99878 5.16524 5.18970 5.26023 5.40122 5.44508 5.48809 5.64302 5.70528 5.71868 5.76862 5.89857 5.96128 5.99550 6.08099 6.09360 6.21204 6.22085 6.39474 6.60705 6.97567 7.47625 7.54539 7.84719 8.20135 8.59344 8.89700 9.49516 11.00593 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024131 B = 0.003727 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.036654 B = 7511.460071 C = 8330.980314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.111 4.111 4 C 0.189 3.811 5 H 0.090 0.910 6 O -0.365 6.365 7 C 0.053 3.947 8 C -0.149 4.149 9 C 0.131 3.869 10 N -0.373 5.373 11 O 0.070 5.930 12 C 0.212 3.788 13 C -0.028 4.028 14 C 0.028 3.972 15 C -0.526 4.526 16 H 0.061 0.939 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 N -0.493 5.493 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 -16.205 9.618 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.150 4.150 4 C 0.129 3.871 5 H 0.108 0.892 6 O -0.283 6.283 7 C -0.023 4.023 8 C -0.206 4.206 9 C -0.142 4.142 10 N -0.083 5.083 11 O 0.012 5.988 12 C -0.007 4.007 13 C -0.067 4.067 14 C -0.010 4.010 15 C -0.564 4.564 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.725 3.275 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.228 5.228 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.370 -16.638 10.261 19.551 hybrid contribution 0.601 0.954 -0.965 1.484 sum 0.971 -15.684 9.296 18.258 Atomic orbital electron populations 1.21759 0.95541 1.01560 1.02068 1.21464 0.96073 0.95730 1.02433 1.21712 0.91048 0.98498 1.03707 1.20172 0.95558 0.84053 0.87290 0.89173 1.88004 1.34915 1.74668 1.30664 1.22571 0.85098 0.96161 0.98506 1.21722 1.01364 1.02066 0.95438 1.26369 1.00719 1.00177 0.86975 1.74570 1.16789 0.93850 1.23064 1.85303 1.54403 1.30749 1.28324 1.29634 0.93553 0.93508 0.84025 1.20756 0.99232 0.92019 0.94725 1.19160 0.92856 0.94602 0.94425 1.21066 0.93508 1.18202 1.23669 0.92031 1.25010 0.94819 0.97435 0.96964 1.69965 1.04687 1.39365 1.38917 0.86505 0.79349 0.80882 0.80756 1.20549 1.21166 1.19690 1.71901 1.18159 1.06759 1.25977 0.92700 0.92622 0.92605 0.91965 0.91121 0.90404 0.89938 0.92919 0.93532 0.91100 0.91814 0.91768 0.89081 0.88251 0.95534 0.95773 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.19 5.88 -26.73 -0.16 -1.35 16 3 C -0.11 -1.41 4.90 -26.73 -0.13 -1.54 16 4 C 0.19 2.67 2.65 -27.88 -0.07 2.59 16 5 H 0.09 1.15 7.85 -51.93 -0.41 0.74 16 6 O -0.37 -4.98 9.47 -35.23 -0.33 -5.32 16 7 C 0.05 0.59 6.44 37.16 0.24 0.83 16 8 C -0.15 -1.36 10.28 37.16 0.38 -0.97 16 9 C 0.13 2.33 6.96 -156.37 -1.09 1.24 16 10 N -0.37 -7.12 12.16 30.90 0.38 -6.74 16 11 O 0.07 1.36 11.31 18.11 0.20 1.57 16 12 C 0.21 4.09 7.77 -13.06 -0.10 3.99 16 13 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 14 C 0.03 0.68 4.95 -27.88 -0.14 0.55 16 15 C -0.53 -14.02 9.11 -34.44 -0.31 -14.33 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.04 13.28 55.43 0.74 -25.31 16 19 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 N -0.49 -9.50 11.55 -9.87 -0.11 -9.61 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.71 7.74 -51.93 -0.40 0.30 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.05 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -30.21 342.40 -6.95 -37.16 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -6.69 Total: -3.56 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.27 Total: -9.15 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 1.00 Total: -41.66 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.13 Total: -3.75 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.21 -6.95 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233360462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.069 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds