Wall clock time and date at job start Mon Mar 30 2020 07:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46743 * 2 1 4 4 C 1.53006 * 109.46889 * 176.12202 * 3 2 1 5 5 H 1.08996 * 109.46884 * 54.58277 * 4 3 2 6 6 O 1.42903 * 109.46908 * 294.58159 * 4 3 2 7 7 C 1.42895 * 113.99765 * 151.97746 * 6 4 3 8 8 C 1.52999 * 109.47058 * 175.38708 * 7 6 4 9 9 C 1.50698 * 109.46917 * 174.58260 * 4 3 2 10 10 N 1.29952 * 126.28761 * 75.02584 * 9 4 3 11 11 O 1.21298 * 110.24977 * 179.97438 * 10 9 4 12 12 C 1.33638 * 109.81422 * 359.97438 * 11 10 9 13 13 C 1.50703 * 126.55321 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47183 * 269.97749 * 13 12 11 15 15 C 1.50698 * 109.47284 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99731 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99990 * 179.97438 * 15 14 13 18 18 N 1.31505 * 119.99834 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99588 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47103 * 90.00493 * 19 17 15 21 21 H 1.48511 * 109.46637 * 210.00146 * 19 17 15 22 22 H 1.48493 * 109.47502 * 329.99898 * 19 17 15 23 23 N 1.31126 * 106.89794 * 359.77014 * 12 11 10 24 24 H 1.09000 * 109.47442 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47591 * 300.00144 * 1 2 3 26 26 H 1.09007 * 109.47128 * 60.00250 * 1 2 3 27 27 H 1.08995 * 109.46934 * 240.00211 * 2 1 3 28 28 H 1.08995 * 109.46720 * 119.99852 * 2 1 3 29 29 H 1.08998 * 109.47647 * 56.12361 * 3 2 1 30 30 H 1.09001 * 109.47137 * 296.12074 * 3 2 1 31 31 H 1.09008 * 109.47369 * 295.38842 * 7 6 4 32 32 H 1.09003 * 109.47312 * 55.38963 * 7 6 4 33 33 H 1.08998 * 109.46813 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47492 * 299.99892 * 8 7 6 35 35 H 1.09003 * 109.46851 * 59.99972 * 8 7 6 36 36 H 1.09002 * 109.47024 * 29.97718 * 13 12 11 37 37 H 1.08995 * 109.47102 * 149.97476 * 13 12 11 38 38 H 1.09002 * 109.46614 * 300.00083 * 14 13 12 39 39 H 1.09003 * 109.46746 * 59.99611 * 14 13 12 40 40 H 0.97008 * 120.00329 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5669 1.4436 0.0976 5 1 3.9824 0.8296 -0.7014 6 8 3.9637 0.9113 1.3630 7 6 5.2476 0.2841 1.3528 8 6 5.6174 -0.1438 2.7744 9 6 4.0776 2.8551 -0.0361 10 7 4.0201 3.7831 0.8718 11 8 4.5175 4.8084 0.4563 12 6 4.9533 4.6262 -0.7939 13 6 5.6319 5.6509 -1.6661 14 6 4.5778 6.4148 -2.4700 15 6 5.2563 7.4398 -3.3417 16 1 6.3318 7.5365 -3.3244 17 6 4.5040 8.2536 -4.1622 18 7 3.1945 8.1354 -4.1836 19 14 5.3453 9.5236 -5.2432 20 1 5.6700 8.9167 -6.5590 21 1 4.4381 10.6824 -5.4429 22 1 6.5961 9.9817 -4.5871 23 7 4.6826 3.3840 -1.1147 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6210 1.9760 0.8532 30 1 1.7344 1.9359 -0.9227 31 1 5.2187 -0.5924 0.7054 32 1 5.9924 0.9871 0.9797 33 1 6.5966 -0.6226 2.7666 34 1 5.6463 0.7326 3.4218 35 1 4.8726 -0.8467 3.1476 36 1 6.1883 6.3491 -1.0407 37 1 6.3172 5.1496 -2.3495 38 1 4.0214 5.7165 -3.0953 39 1 3.8924 6.9160 -1.7865 40 1 2.6651 8.7082 -4.7605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233360462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:55 Heat of formation + Delta-G solvation = -30.921666 kcal Electronic energy + Delta-G solvation = -20293.213045 eV Core-core repulsion = 17109.742590 eV Total energy + Delta-G solvation = -3183.470455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.63460 -39.86518 -37.05920 -36.30552 -35.72157 -34.32680 -32.53824 -31.78738 -30.01550 -27.75490 -26.13400 -24.75852 -23.88871 -23.46459 -22.26188 -21.67446 -19.23020 -18.74299 -18.35330 -17.96562 -16.99512 -16.49865 -16.12911 -15.79882 -15.68827 -15.32048 -14.93697 -14.34997 -14.18993 -13.77156 -13.58904 -13.44354 -13.12758 -13.11011 -12.95473 -12.81680 -12.71808 -12.53972 -12.29377 -12.18917 -12.04078 -11.97341 -11.93343 -11.74560 -11.57032 -11.34949 -10.96032 -10.82113 -10.56728 -8.20325 -6.32468 0.08494 1.09515 1.46559 1.47341 1.58482 1.83314 2.25697 2.44390 2.63557 3.12650 3.15225 3.66423 3.78189 4.00859 4.06805 4.16126 4.17893 4.27858 4.37982 4.41900 4.51124 4.56020 4.60183 4.64385 4.80343 4.83188 4.88058 4.93230 4.94564 4.98347 5.16559 5.20358 5.28487 5.41885 5.42787 5.52153 5.77344 5.98106 6.12822 6.83128 7.09756 7.37815 8.92127 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024131 B = 0.003727 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.036654 B = 7511.460071 C = 8330.980314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.109 4.109 4 C 0.189 3.811 5 H 0.107 0.893 6 O -0.374 6.374 7 C 0.045 3.955 8 C -0.145 4.145 9 C 0.136 3.864 10 N -0.389 5.389 11 O 0.062 5.938 12 C 0.207 3.793 13 C -0.014 4.014 14 C 0.034 3.966 15 C -0.539 4.539 16 H 0.079 0.921 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.970 3.030 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.256 1.256 23 N -0.504 5.504 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.115 0.885 38 H -0.006 1.006 39 H -0.003 1.003 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -17.253 9.519 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.147 4.147 4 C 0.129 3.871 5 H 0.125 0.875 6 O -0.292 6.292 7 C -0.031 4.031 8 C -0.202 4.202 9 C -0.138 4.138 10 N -0.101 5.101 11 O 0.006 5.994 12 C -0.012 4.012 13 C -0.052 4.052 14 C -0.005 4.005 15 C -0.577 4.577 16 H 0.097 0.903 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.180 1.180 23 N -0.239 5.239 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.705 -17.682 10.179 20.474 hybrid contribution 0.174 1.212 -0.890 1.514 sum 1.879 -16.470 9.288 19.002 Atomic orbital electron populations 1.21764 0.94859 1.02560 1.01730 1.21426 0.96593 0.93683 1.03203 1.21704 0.90191 1.00297 1.02513 1.20411 0.96251 0.82272 0.88203 0.87542 1.88005 1.36140 1.74685 1.30377 1.22820 0.83598 0.96429 1.00264 1.21736 1.02865 1.01731 0.93830 1.27107 0.99305 1.01374 0.85980 1.74561 1.17590 0.94149 1.23768 1.85285 1.54641 1.31090 1.28359 1.29605 0.93703 0.93717 0.84219 1.20539 0.97736 0.92161 0.94796 1.18950 0.93526 0.94074 0.93906 1.21561 0.94482 1.18163 1.23445 0.90317 1.26001 0.95372 0.99814 0.98618 1.70114 1.06490 1.40714 1.40163 0.85367 0.78568 0.77830 0.78808 1.19911 1.21348 1.18002 1.71911 1.18500 1.06931 1.26595 0.91010 0.93025 0.92948 0.90688 0.90756 0.91841 0.90936 0.90569 0.95055 0.88862 0.93276 0.90924 0.86644 0.86655 0.98716 0.98493 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.91 71.98 0.71 -1.83 16 2 C -0.11 -2.06 5.88 30.59 0.18 -1.88 16 3 C -0.11 -2.71 4.90 30.60 0.15 -2.56 16 4 C 0.19 5.18 2.65 29.85 0.08 5.25 16 5 H 0.11 2.55 7.85 -2.39 -0.02 2.53 16 6 O -0.37 -9.81 9.47 -148.98 -1.41 -11.22 16 7 C 0.04 0.93 6.44 71.98 0.46 1.39 16 8 C -0.14 -2.38 10.28 71.98 0.74 -1.63 16 9 C 0.14 4.83 6.96 138.46 0.96 5.79 16 10 N -0.39 -14.97 12.16 -60.31 -0.73 -15.71 16 11 O 0.06 2.41 11.31 74.88 0.85 3.26 16 12 C 0.21 8.00 7.77 88.38 0.69 8.68 16 13 C -0.01 -0.51 5.78 29.85 0.17 -0.34 16 14 C 0.03 1.69 4.95 29.85 0.15 1.84 16 15 C -0.54 -28.53 9.11 25.60 0.23 -28.29 16 16 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 17 C 0.00 0.00 5.46 84.66 0.46 0.47 16 18 N -0.93 -55.74 13.28 21.45 0.28 -55.45 16 19 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 23 N -0.50 -19.37 11.55 -303.19 -3.50 -22.87 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.34 7.74 -2.39 -0.02 1.32 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.03 0.74 8.06 -2.39 -0.02 0.72 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 37 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 38 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 40 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -65.24 342.40 3.50 -61.74 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.00 Total: 9.00 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 4.99 Total: -13.11 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -3.95 Total: -94.03 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.56 Total: -7.97 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.24 3.50 -61.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233360462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.821 kcal (2) G-P(sol) polarization free energy of solvation -65.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds