Wall clock time and date at job start Mon Mar 30 2020 07:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 O 1.42905 * 109.46848 * 294.99674 * 4 3 2 7 7 C 1.42907 * 113.99648 * 150.00501 * 6 4 3 8 8 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 9 9 N 1.29951 * 126.28960 * 75.02403 * 8 4 3 10 10 O 1.21304 * 110.25155 * 179.97438 * 9 8 4 11 11 C 1.33649 * 109.81040 * 359.97438 * 10 9 8 12 12 C 1.50698 * 126.55060 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47125 * 269.98046 * 12 11 10 14 14 H 1.08996 * 109.46772 * 304.99874 * 13 12 11 15 15 C 1.53004 * 109.47141 * 65.00040 * 13 12 11 16 16 C 1.50700 * 109.46974 * 185.00100 * 13 12 11 17 17 H 1.07996 * 120.00033 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99881 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99790 * 179.97438 * 18 16 13 20 20 Si 1.86794 * 119.99878 * 359.97438 * 18 16 13 21 21 H 1.48502 * 109.47108 * 90.00301 * 20 18 16 22 22 H 1.48501 * 109.46871 * 210.00027 * 20 18 16 23 23 H 1.48505 * 109.47436 * 330.00100 * 20 18 16 24 24 N 1.31133 * 106.89682 * 359.77064 * 11 10 9 25 25 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.08995 * 109.46420 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46528 * 300.00034 * 7 6 4 34 34 H 1.08998 * 109.46833 * 59.99905 * 7 6 4 35 35 H 1.09000 * 109.46929 * 29.97707 * 12 11 10 36 36 H 1.08999 * 109.47139 * 149.97807 * 12 11 10 37 37 H 1.08998 * 109.47276 * 59.99703 * 15 13 12 38 38 H 1.09001 * 109.46656 * 180.02562 * 15 13 12 39 39 H 1.09006 * 109.46880 * 299.99782 * 15 13 12 40 40 H 0.97005 * 119.99799 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 8 4.0468 0.8728 1.2202 7 6 5.3064 0.2088 1.0989 8 6 4.0723 2.8578 -0.1245 9 7 4.0739 3.7581 0.8127 10 8 4.5444 4.7960 0.3970 11 6 4.8990 4.6518 -0.8835 12 6 5.5200 5.7031 -1.7667 13 6 4.4164 6.4885 -2.4781 14 1 3.7674 5.7972 -3.0157 15 6 3.5938 7.2617 -1.4454 16 6 5.0368 7.4561 -3.4527 17 1 6.1108 7.5063 -3.5541 18 6 4.2333 8.2782 -4.2140 19 7 4.7747 9.1230 -5.0641 20 14 2.3756 8.1920 -4.0379 21 1 1.9330 9.1457 -2.9893 22 1 1.7388 8.5479 -5.3314 23 1 1.9782 6.8138 -3.6532 24 7 4.6072 3.4193 -1.2233 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.5984 -0.1961 2.0678 33 1 5.2209 -0.6032 0.3768 34 1 6.0602 0.9192 0.7593 35 1 6.1154 6.3835 -1.1579 36 1 6.1600 5.2237 -2.5074 37 1 4.2428 7.9529 -0.9076 38 1 2.8073 7.8208 -1.9522 39 1 3.1450 6.5617 -0.7405 40 1 4.2094 9.7016 -5.5995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233373884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:05 Heat of formation + Delta-G solvation = 2.794182 kcal Electronic energy + Delta-G solvation = -20768.412238 eV Core-core repulsion = 17586.403813 eV Total energy + Delta-G solvation = -3182.008426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.26486 -38.78083 -36.02574 -35.33160 -34.77641 -32.61355 -31.27510 -29.73922 -27.26599 -26.60892 -25.22377 -25.03096 -23.16128 -21.60247 -20.99056 -19.71302 -17.82934 -17.39092 -16.94137 -16.57858 -15.68281 -15.52485 -14.95373 -14.90322 -14.05838 -13.81960 -13.62966 -13.51338 -12.92124 -12.57364 -12.43212 -12.31080 -12.08418 -11.90148 -11.83050 -11.52301 -11.24468 -11.23076 -11.00356 -10.82738 -10.75024 -10.59155 -10.39504 -10.16076 -10.05630 -9.66257 -9.29895 -9.16997 -8.63695 -6.16350 -4.17749 1.48335 2.44047 3.22859 3.23768 3.34298 3.34948 3.36194 3.79627 4.34207 4.41246 4.63679 4.73681 4.87410 4.99029 5.14332 5.15427 5.16580 5.37601 5.39444 5.42579 5.50875 5.62119 5.69229 5.77224 5.85970 5.90848 5.93849 6.00254 6.13193 6.19990 6.26208 6.38017 6.54326 6.66943 6.84511 6.96063 7.31106 7.60570 8.36886 8.48154 8.84739 9.44780 10.96202 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023250 B = 0.004597 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.006414 B = 6088.913436 C = 6828.482274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.112 4.112 4 C 0.187 3.813 5 H 0.092 0.908 6 O -0.367 6.367 7 C 0.028 3.972 8 C 0.131 3.869 9 N -0.373 5.373 10 O 0.073 5.927 11 C 0.210 3.790 12 C -0.016 4.016 13 C 0.016 3.984 14 H 0.035 0.965 15 C -0.153 4.153 16 C -0.518 4.518 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.896 5.896 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.268 1.268 24 N -0.491 5.491 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.024 0.976 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 -16.741 10.392 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.151 4.151 4 C 0.127 3.873 5 H 0.110 0.890 6 O -0.284 6.284 7 C -0.069 4.069 8 C -0.142 4.142 9 N -0.082 5.082 10 O 0.014 5.986 11 C -0.010 4.010 12 C -0.055 4.055 13 C -0.004 4.004 14 H 0.053 0.947 15 C -0.210 4.210 16 C -0.556 4.556 17 H 0.098 0.902 18 C -0.127 4.127 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.224 1.224 23 H -0.193 1.193 24 N -0.225 5.225 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.519 -17.124 10.983 20.645 hybrid contribution -0.735 0.330 -0.269 0.850 sum -4.255 -16.793 10.714 20.369 Atomic orbital electron populations 1.21760 0.95534 1.01637 1.02030 1.21462 0.96051 0.95672 1.02508 1.21723 0.90988 0.98556 1.03794 1.20247 0.94859 0.83723 0.88498 0.88995 1.88001 1.36794 1.72207 1.31387 1.22865 0.85356 0.95935 1.02698 1.26374 1.01368 1.00387 0.86119 1.74581 1.16773 0.93605 1.23191 1.85328 1.56347 1.30192 1.26727 1.29577 0.93728 0.94028 0.83631 1.20606 0.99053 0.91249 0.94593 1.19202 0.92663 0.94879 0.93679 0.94653 1.22266 1.00037 0.99943 0.98784 1.20837 0.95367 1.19177 1.20185 0.90217 1.24937 0.98508 0.94697 0.94589 1.69876 1.35724 1.22991 1.24713 0.86856 0.86217 0.78939 0.76260 1.20478 1.22374 1.19266 1.71912 1.18205 1.05978 1.26443 0.92626 0.92643 0.92624 0.91933 0.91083 0.90423 0.90038 0.89245 0.93487 0.94105 0.88522 0.87487 0.92194 0.93887 0.95670 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.15 0.37 -0.92 16 2 C -0.12 -1.11 5.83 -26.74 -0.16 -1.27 16 3 C -0.11 -1.33 4.90 -26.73 -0.13 -1.46 16 4 C 0.19 2.49 2.66 -27.88 -0.07 2.41 16 5 H 0.09 1.09 7.79 -51.93 -0.40 0.69 16 6 O -0.37 -4.77 9.87 -35.23 -0.35 -5.12 16 7 C 0.03 0.28 10.81 101.05 1.09 1.37 16 8 C 0.13 2.21 7.06 -156.37 -1.10 1.11 16 9 N -0.37 -6.73 12.16 30.91 0.38 -6.35 16 10 O 0.07 1.32 10.75 18.08 0.19 1.51 16 11 C 0.21 3.79 6.92 -13.05 -0.09 3.70 16 12 C -0.02 -0.29 5.26 -27.88 -0.15 -0.44 16 13 C 0.02 0.35 1.88 -91.77 -0.17 0.18 16 14 H 0.04 0.83 7.20 -51.93 -0.37 0.46 16 15 C -0.15 -3.22 8.49 37.16 0.32 -2.91 16 16 C -0.52 -13.58 9.14 -34.44 -0.31 -13.90 16 17 H 0.08 2.20 7.99 -52.49 -0.42 1.79 16 18 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 19 N -0.90 -26.39 13.96 55.43 0.77 -25.62 16 20 Si 0.89 21.54 24.37 -169.99 -4.14 17.39 16 21 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 22 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 24 N -0.49 -8.93 11.55 -9.86 -0.11 -9.04 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 39 H 0.02 0.48 6.93 -51.93 -0.36 0.12 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -30.09 328.42 -5.21 -35.29 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.38 Total: -2.87 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.51 Total: -10.15 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 1.04 Total: -41.01 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.15 Total: -3.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.39 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.09 -5.21 -35.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233373884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.085 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds