Wall clock time and date at job start Mon Mar 30 2020 07:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99895 * 4 3 2 6 6 O 1.42905 * 109.46848 * 294.99674 * 4 3 2 7 7 C 1.42907 * 113.99648 * 150.00501 * 6 4 3 8 8 C 1.50700 * 109.46738 * 175.00110 * 4 3 2 9 9 N 1.29951 * 126.28960 * 75.02403 * 8 4 3 10 10 O 1.21304 * 110.25155 * 179.97438 * 9 8 4 11 11 C 1.33649 * 109.81040 * 359.97438 * 10 9 8 12 12 C 1.50698 * 126.55060 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47125 * 269.98046 * 12 11 10 14 14 H 1.08996 * 109.46772 * 304.99874 * 13 12 11 15 15 C 1.53004 * 109.47141 * 65.00040 * 13 12 11 16 16 C 1.50700 * 109.46974 * 185.00100 * 13 12 11 17 17 H 1.07996 * 120.00033 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99881 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99790 * 179.97438 * 18 16 13 20 20 Si 1.86794 * 119.99878 * 359.97438 * 18 16 13 21 21 H 1.48502 * 109.47108 * 90.00301 * 20 18 16 22 22 H 1.48501 * 109.46871 * 210.00027 * 20 18 16 23 23 H 1.48505 * 109.47436 * 330.00100 * 20 18 16 24 24 N 1.31133 * 106.89682 * 359.77064 * 11 10 9 25 25 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 27 27 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.08995 * 109.46420 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46528 * 300.00034 * 7 6 4 34 34 H 1.08998 * 109.46833 * 59.99905 * 7 6 4 35 35 H 1.09000 * 109.46929 * 29.97707 * 12 11 10 36 36 H 1.08999 * 109.47139 * 149.97807 * 12 11 10 37 37 H 1.08998 * 109.47276 * 59.99703 * 15 13 12 38 38 H 1.09001 * 109.46656 * 180.02562 * 15 13 12 39 39 H 1.09006 * 109.46880 * 299.99782 * 15 13 12 40 40 H 0.97005 * 119.99799 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8530 -0.8426 6 8 4.0468 0.8728 1.2202 7 6 5.3064 0.2088 1.0989 8 6 4.0723 2.8578 -0.1245 9 7 4.0739 3.7581 0.8127 10 8 4.5444 4.7960 0.3970 11 6 4.8990 4.6518 -0.8835 12 6 5.5200 5.7031 -1.7667 13 6 4.4164 6.4885 -2.4781 14 1 3.7674 5.7972 -3.0157 15 6 3.5938 7.2617 -1.4454 16 6 5.0368 7.4561 -3.4527 17 1 6.1108 7.5063 -3.5541 18 6 4.2333 8.2782 -4.2140 19 7 4.7747 9.1230 -5.0641 20 14 2.3756 8.1920 -4.0379 21 1 1.9330 9.1457 -2.9893 22 1 1.7388 8.5479 -5.3314 23 1 1.9782 6.8138 -3.6532 24 7 4.6072 3.4193 -1.2233 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.5984 -0.1961 2.0678 33 1 5.2209 -0.6032 0.3768 34 1 6.0602 0.9192 0.7593 35 1 6.1154 6.3835 -1.1579 36 1 6.1600 5.2237 -2.5074 37 1 4.2428 7.9529 -0.9076 38 1 2.8073 7.8208 -1.9522 39 1 3.1450 6.5617 -0.7405 40 1 4.2094 9.7016 -5.5995 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233373884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:05 Heat of formation + Delta-G solvation = -17.532223 kcal Electronic energy + Delta-G solvation = -20769.293657 eV Core-core repulsion = 17586.403813 eV Total energy + Delta-G solvation = -3182.889845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.64356 -39.75412 -37.66595 -36.65142 -35.69736 -34.37857 -32.93885 -30.70678 -28.81644 -27.41704 -27.14832 -26.11195 -24.55226 -22.70770 -22.10733 -21.30556 -19.27803 -18.88677 -18.45830 -17.79820 -16.82667 -16.77953 -16.40680 -15.77391 -15.55362 -15.45006 -14.81841 -14.53427 -14.33150 -14.21116 -13.71276 -13.46073 -13.29989 -13.16628 -13.03394 -12.84963 -12.54438 -12.36103 -12.31397 -12.12781 -12.01117 -11.97296 -11.76407 -11.57012 -11.42095 -11.14631 -11.07525 -10.85170 -10.70083 -8.29317 -6.33118 0.09022 1.09615 1.30902 1.37268 1.45375 1.82231 2.30625 2.32161 2.67642 3.06979 3.14609 3.67499 3.79781 4.01347 4.15300 4.17473 4.20139 4.32886 4.38638 4.42097 4.49235 4.60203 4.64793 4.65789 4.74680 4.79402 4.81001 4.83791 4.89735 4.97327 5.05130 5.18288 5.26536 5.27732 5.41899 5.56492 5.62500 5.93067 6.26494 6.73911 7.11018 7.32547 8.86497 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023250 B = 0.004597 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.006414 B = 6088.913436 C = 6828.482274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.109 4.109 4 C 0.185 3.815 5 H 0.108 0.892 6 O -0.379 6.379 7 C 0.022 3.978 8 C 0.135 3.865 9 N -0.388 5.388 10 O 0.069 5.931 11 C 0.208 3.792 12 C -0.007 4.007 13 C 0.017 3.983 14 H 0.024 0.976 15 C -0.150 4.150 16 C -0.513 4.513 17 H 0.055 0.945 18 C 0.023 3.977 19 N -0.942 5.942 20 Si 0.939 3.061 21 H -0.267 1.267 22 H -0.299 1.299 23 H -0.258 1.258 24 N -0.502 5.502 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.031 0.969 39 H 0.041 0.959 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -18.544 11.481 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.147 4.147 4 C 0.125 3.875 5 H 0.125 0.875 6 O -0.296 6.296 7 C -0.074 4.074 8 C -0.139 4.139 9 N -0.098 5.098 10 O 0.012 5.988 11 C -0.011 4.011 12 C -0.046 4.046 13 C -0.003 4.003 14 H 0.042 0.958 15 C -0.207 4.207 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.175 4.175 19 N -0.582 5.582 20 Si 0.767 3.233 21 H -0.193 1.193 22 H -0.227 1.227 23 H -0.183 1.183 24 N -0.237 5.237 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.380 -18.932 12.096 22.890 hybrid contribution -0.369 0.823 -0.579 1.072 sum -4.749 -18.110 11.517 21.981 Atomic orbital electron populations 1.21764 0.94889 1.02518 1.01775 1.21426 0.96540 0.93878 1.03158 1.21714 0.90082 1.00159 1.02794 1.20495 0.95592 0.82077 0.89327 0.87457 1.87991 1.38001 1.72302 1.31326 1.23076 0.83795 0.96006 1.04518 1.27060 1.00077 1.01534 0.85222 1.74578 1.17558 0.93924 1.23754 1.85314 1.56493 1.30392 1.26588 1.29412 0.93852 0.94061 0.83774 1.20417 0.97892 0.91422 0.94895 1.19078 0.93589 0.94202 0.93479 0.95828 1.22188 0.99708 1.00203 0.98613 1.21135 0.94464 1.19138 1.20351 0.92637 1.25662 1.02617 0.94687 0.94580 1.70000 1.37295 1.24548 1.26346 0.85996 0.81487 0.79542 0.76234 1.19323 1.22728 1.18267 1.71928 1.18475 1.06189 1.27122 0.92985 0.92842 0.91180 0.90747 0.90902 0.91758 0.90675 0.87397 0.91265 0.95468 0.86609 0.86973 0.91173 0.95059 0.94001 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.11 -1.85 5.83 30.59 0.18 -1.67 16 3 C -0.11 -2.42 4.90 30.59 0.15 -2.27 16 4 C 0.19 4.59 2.66 29.85 0.08 4.67 16 5 H 0.11 2.30 7.79 -2.39 -0.02 2.28 16 6 O -0.38 -9.11 9.87 -148.98 -1.47 -10.58 16 7 C 0.02 0.39 10.81 113.37 1.23 1.61 16 8 C 0.13 4.34 7.06 138.46 0.98 5.32 16 9 N -0.39 -13.49 12.16 -60.27 -0.73 -14.23 16 10 O 0.07 2.38 10.75 74.77 0.80 3.19 16 11 C 0.21 7.21 6.92 88.38 0.61 7.82 16 12 C -0.01 -0.26 5.26 29.85 0.16 -0.10 16 13 C 0.02 0.71 1.88 -11.54 -0.02 0.69 16 14 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 15 C -0.15 -6.01 8.49 71.98 0.61 -5.40 16 16 C -0.51 -26.89 9.14 25.60 0.23 -26.66 16 17 H 0.06 3.11 7.99 -2.91 -0.02 3.09 16 18 C 0.02 1.26 5.45 84.66 0.46 1.72 16 19 N -0.94 -56.38 13.96 21.45 0.30 -56.08 16 20 Si 0.94 43.99 24.37 68.60 1.67 45.66 16 21 H -0.27 -11.96 6.87 99.48 0.68 -11.28 16 22 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 23 H -0.26 -11.57 6.53 99.48 0.65 -10.92 16 24 N -0.50 -17.52 11.55 -303.15 -3.50 -21.02 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.19 7.82 -2.39 -0.02 1.17 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 34 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.03 1.32 3.27 -2.39 -0.01 1.31 16 39 H 0.04 1.52 6.93 -2.38 -0.02 1.50 16 40 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -63.57 328.42 3.38 -60.19 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.93 Total: 8.68 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 5.38 Total: -15.81 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -3.94 Total: -91.33 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.67 Total: -7.39 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Total: -63.57 3.38 -60.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233373884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.657 kcal (2) G-P(sol) polarization free energy of solvation -63.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds