Wall clock time and date at job start Mon Mar 30 2020 07:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47399 * 55.00368 * 4 3 2 6 6 O 1.42904 * 109.47179 * 295.00021 * 4 3 2 7 7 C 1.42896 * 113.99831 * 149.99793 * 6 4 3 8 8 C 1.50706 * 109.47290 * 175.00042 * 4 3 2 9 9 N 1.29950 * 126.28424 * 75.02406 * 8 4 3 10 10 O 1.21299 * 110.24840 * 179.97438 * 9 8 4 11 11 C 1.33648 * 109.81008 * 0.02562 * 10 9 8 12 12 C 1.50706 * 126.54785 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46804 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47102 * 60.02536 * 12 11 10 15 15 C 1.52998 * 109.47188 * 300.02326 * 12 11 10 16 16 C 1.50699 * 109.46815 * 184.99938 * 15 12 11 17 17 H 1.08000 * 120.00386 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99561 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00365 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99739 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47390 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47394 * 120.00042 * 20 18 16 23 23 H 1.48502 * 109.46714 * 239.99960 * 20 18 16 24 24 N 1.31123 * 106.89944 * 359.76665 * 11 10 9 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08997 * 109.47602 * 300.00171 * 7 6 4 33 33 H 1.08999 * 109.47604 * 60.00506 * 7 6 4 34 34 H 1.09007 * 109.47097 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47286 * 300.00199 * 14 12 11 36 36 H 1.09007 * 109.46919 * 59.99720 * 14 12 11 37 37 H 1.08997 * 109.47318 * 179.97438 * 14 12 11 38 38 H 1.08992 * 109.47244 * 305.00570 * 15 12 11 39 39 H 1.09000 * 109.46800 * 65.00116 * 15 12 11 40 40 H 0.96992 * 120.00353 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 8 4.0459 0.8732 1.2220 7 6 5.3055 0.2093 1.1018 8 6 4.0725 2.8578 -0.1232 9 7 4.0732 3.7583 0.8137 10 8 4.5441 4.7961 0.3982 11 6 4.8987 4.6518 -0.8823 12 6 5.5202 5.7032 -1.7653 13 1 5.6949 5.2873 -2.7576 14 6 6.8508 6.1557 -1.1605 15 6 4.5754 6.9017 -1.8738 16 6 5.1396 7.8991 -2.8525 17 1 6.0780 7.6980 -3.3480 18 6 4.4578 9.0683 -3.1154 19 7 3.3154 9.3134 -2.5117 20 14 5.1568 10.3043 -4.3292 21 1 6.4442 9.7961 -4.8673 22 1 4.1964 10.5002 -5.4447 23 1 5.3858 11.5996 -3.6399 24 7 4.6067 3.4196 -1.2222 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 5.2208 -0.6030 0.3800 33 1 6.0597 0.9194 0.7627 34 1 5.5973 -0.1947 2.0713 35 1 6.6761 6.5715 -0.1682 36 1 7.5239 5.3017 -1.0832 37 1 7.3005 6.9157 -1.7993 38 1 3.5989 6.5643 -2.2209 39 1 4.4709 7.3715 -0.8958 40 1 2.8356 10.1357 -2.6970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233375281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:23 Heat of formation + Delta-G solvation = -8.552192 kcal Electronic energy + Delta-G solvation = -20542.945316 eV Core-core repulsion = 17360.444874 eV Total energy + Delta-G solvation = -3182.500442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.14166 -38.72127 -35.90852 -35.24254 -34.68589 -32.59111 -31.08269 -29.56498 -27.15447 -26.58035 -25.04397 -24.59804 -23.02750 -21.97923 -21.23196 -19.57322 -17.60772 -17.08446 -16.80304 -16.47705 -15.60316 -15.45073 -14.90031 -14.59136 -14.46608 -13.66537 -13.57807 -13.32020 -12.64742 -12.52726 -12.27972 -12.10317 -11.95099 -11.81570 -11.46170 -11.37794 -11.19159 -11.02406 -10.93928 -10.92229 -10.74718 -10.61158 -10.54922 -10.17981 -10.09585 -9.91363 -9.26237 -9.19437 -8.46323 -6.09861 -4.13944 1.61200 2.53835 3.27061 3.34134 3.36625 3.38034 3.41308 3.87012 4.37027 4.50894 4.69546 4.79317 4.92450 5.03416 5.18908 5.19554 5.26638 5.43570 5.45375 5.47192 5.56412 5.66560 5.72117 5.74080 5.81535 5.95780 5.96417 6.05407 6.18359 6.22950 6.30738 6.54201 6.65575 6.80836 6.90440 7.46761 7.54836 7.85570 8.21494 8.59671 8.90632 9.50687 11.01481 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026878 B = 0.003912 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.495263 B = 7155.302411 C = 7820.206476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.113 4.113 4 C 0.188 3.812 5 H 0.091 0.909 6 O -0.367 6.367 7 C 0.028 3.972 8 C 0.129 3.871 9 N -0.372 5.372 10 O 0.079 5.921 11 C 0.218 3.782 12 C -0.001 4.001 13 H 0.105 0.895 14 C -0.135 4.135 15 C 0.028 3.972 16 C -0.521 4.521 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.895 3.105 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.283 1.283 24 N -0.499 5.499 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.029 0.971 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 -16.933 4.639 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.151 4.151 4 C 0.128 3.872 5 H 0.109 0.891 6 O -0.284 6.284 7 C -0.068 4.068 8 C -0.145 4.145 9 N -0.081 5.081 10 O 0.020 5.980 11 C -0.002 4.002 12 C -0.022 4.022 13 H 0.123 0.877 14 C -0.193 4.193 15 C -0.009 4.009 16 C -0.559 4.559 17 H 0.081 0.919 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.233 5.233 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.506 -17.336 5.388 18.161 hybrid contribution 0.504 0.929 -0.946 1.418 sum 1.009 -16.407 4.441 17.027 Atomic orbital electron populations 1.21763 0.95530 1.01584 1.02084 1.21462 0.96056 0.95721 1.02438 1.21723 0.90988 0.98478 1.03891 1.20231 0.94867 0.83746 0.88374 0.89128 1.88000 1.36726 1.72215 1.31430 1.22855 0.85424 0.95896 1.02649 1.26330 1.01549 1.00334 0.86255 1.74595 1.16643 0.93584 1.23276 1.85312 1.56047 1.30004 1.26634 1.29612 0.93151 0.93664 0.83732 1.20359 0.96310 0.91432 0.94064 0.87655 1.21782 0.94679 1.00877 1.01963 1.19248 0.93459 0.89601 0.98639 1.21091 1.07218 1.02935 1.24669 0.91893 1.25006 0.94837 0.98192 0.96194 1.69972 1.14838 1.25664 1.42446 0.86489 0.79129 0.81170 0.80947 1.19576 1.20993 1.20956 1.71894 1.18725 1.05988 1.26703 0.92626 0.92582 0.92675 0.91113 0.92005 0.89997 0.90357 0.93549 0.94150 0.89270 0.92290 0.94152 0.89614 0.95989 0.95237 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.15 5.83 -26.74 -0.16 -1.31 16 3 C -0.11 -1.39 4.90 -26.74 -0.13 -1.53 16 4 C 0.19 2.61 2.66 -27.88 -0.07 2.53 16 5 H 0.09 1.11 7.79 -51.93 -0.40 0.71 16 6 O -0.37 -4.98 9.87 -35.23 -0.35 -5.33 16 7 C 0.03 0.30 10.81 101.05 1.09 1.39 16 8 C 0.13 2.29 7.06 -156.37 -1.10 1.19 16 9 N -0.37 -7.25 12.16 30.90 0.38 -6.88 16 10 O 0.08 1.58 11.31 18.09 0.20 1.79 16 11 C 0.22 4.27 7.02 -13.06 -0.09 4.18 16 12 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 13 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 14 C -0.14 -2.31 8.98 37.16 0.33 -1.98 16 15 C 0.03 0.69 4.43 -27.88 -0.12 0.57 16 16 C -0.52 -13.58 8.41 -34.44 -0.29 -13.87 16 17 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 20 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 N -0.50 -9.48 11.55 -9.86 -0.11 -9.60 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 37 H 0.09 1.49 6.95 -51.93 -0.36 1.12 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -29.83 339.16 -6.18 -36.00 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -6.59 Total: -3.12 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -0.53 Total: -8.55 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 1.00 Total: -41.53 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.14 Total: -3.55 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.83 -6.18 -36.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233375281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.453 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds