Wall clock time and date at job start Mon Mar 30 2020 07:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47399 * 55.00368 * 4 3 2 6 6 O 1.42904 * 109.47179 * 295.00021 * 4 3 2 7 7 C 1.42896 * 113.99831 * 149.99793 * 6 4 3 8 8 C 1.50706 * 109.47290 * 175.00042 * 4 3 2 9 9 N 1.29950 * 126.28424 * 75.02406 * 8 4 3 10 10 O 1.21299 * 110.24840 * 179.97438 * 9 8 4 11 11 C 1.33648 * 109.81008 * 0.02562 * 10 9 8 12 12 C 1.50706 * 126.54785 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.46804 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47102 * 60.02536 * 12 11 10 15 15 C 1.52998 * 109.47188 * 300.02326 * 12 11 10 16 16 C 1.50699 * 109.46815 * 184.99938 * 15 12 11 17 17 H 1.08000 * 120.00386 * 0.02562 * 16 15 12 18 18 C 1.37882 * 119.99561 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00365 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99739 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47390 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47394 * 120.00042 * 20 18 16 23 23 H 1.48502 * 109.46714 * 239.99960 * 20 18 16 24 24 N 1.31123 * 106.89944 * 359.76665 * 11 10 9 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08997 * 109.47602 * 300.00171 * 7 6 4 33 33 H 1.08999 * 109.47604 * 60.00506 * 7 6 4 34 34 H 1.09007 * 109.47097 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47286 * 300.00199 * 14 12 11 36 36 H 1.09007 * 109.46919 * 59.99720 * 14 12 11 37 37 H 1.08997 * 109.47318 * 179.97438 * 14 12 11 38 38 H 1.08992 * 109.47244 * 305.00570 * 15 12 11 39 39 H 1.09000 * 109.46800 * 65.00116 * 15 12 11 40 40 H 0.96992 * 120.00353 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 8 4.0459 0.8732 1.2220 7 6 5.3055 0.2093 1.1018 8 6 4.0725 2.8578 -0.1232 9 7 4.0732 3.7583 0.8137 10 8 4.5441 4.7961 0.3982 11 6 4.8987 4.6518 -0.8823 12 6 5.5202 5.7032 -1.7653 13 1 5.6949 5.2873 -2.7576 14 6 6.8508 6.1557 -1.1605 15 6 4.5754 6.9017 -1.8738 16 6 5.1396 7.8991 -2.8525 17 1 6.0780 7.6980 -3.3480 18 6 4.4578 9.0683 -3.1154 19 7 3.3154 9.3134 -2.5117 20 14 5.1568 10.3043 -4.3292 21 1 6.4442 9.7961 -4.8673 22 1 4.1964 10.5002 -5.4447 23 1 5.3858 11.5996 -3.6399 24 7 4.6067 3.4196 -1.2222 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 5.2208 -0.6030 0.3800 33 1 6.0597 0.9194 0.7627 34 1 5.5973 -0.1947 2.0713 35 1 6.6761 6.5715 -0.1682 36 1 7.5239 5.3017 -1.0832 37 1 7.3005 6.9157 -1.7993 38 1 3.5989 6.5643 -2.2209 39 1 4.4709 7.3715 -0.8958 40 1 2.8356 10.1357 -2.6970 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233375281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:23 Heat of formation + Delta-G solvation = -27.506617 kcal Electronic energy + Delta-G solvation = -20543.767241 eV Core-core repulsion = 17360.444874 eV Total energy + Delta-G solvation = -3183.322367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.64521 -39.76215 -37.56341 -36.62081 -35.68212 -34.50641 -32.58588 -30.63510 -29.00975 -27.43225 -26.34886 -26.09041 -24.67171 -23.42889 -22.16498 -21.05553 -19.12726 -18.66094 -18.40311 -17.78447 -16.78993 -16.51159 -16.40327 -16.13342 -15.69979 -15.11650 -14.50982 -14.43411 -14.33072 -13.87732 -13.64451 -13.32628 -13.15069 -13.05465 -12.87660 -12.79777 -12.66487 -12.44118 -12.25299 -12.20253 -12.11412 -11.98957 -11.83559 -11.60811 -11.56503 -11.24475 -11.07982 -10.82963 -10.55842 -8.17861 -6.28647 0.08029 1.08213 1.46349 1.47552 1.59899 1.82921 2.27536 2.45649 2.66822 3.11847 3.17885 3.65587 3.78915 3.99665 4.13185 4.18274 4.22412 4.26739 4.37745 4.42103 4.49634 4.62308 4.65180 4.73510 4.75066 4.79351 4.84842 4.97817 5.02962 5.06704 5.18312 5.28283 5.35445 5.40647 5.42468 5.57422 5.79956 5.93210 6.16084 6.85737 7.08403 7.40892 8.94946 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026878 B = 0.003912 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.495263 B = 7155.302411 C = 7820.206476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.110 4.110 4 C 0.187 3.813 5 H 0.112 0.888 6 O -0.380 6.380 7 C 0.022 3.978 8 C 0.137 3.863 9 N -0.391 5.391 10 O 0.060 5.940 11 C 0.211 3.789 12 C 0.009 3.991 13 H 0.115 0.885 14 C -0.129 4.129 15 C 0.036 3.964 16 C -0.527 4.527 17 H 0.080 0.920 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.253 1.253 22 H -0.285 1.285 23 H -0.283 1.283 24 N -0.502 5.502 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.108 0.892 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.086 0.914 38 H -0.012 1.012 39 H 0.004 0.996 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 -18.461 3.786 18.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.149 4.149 4 C 0.127 3.873 5 H 0.129 0.871 6 O -0.297 6.297 7 C -0.074 4.074 8 C -0.137 4.137 9 N -0.103 5.103 10 O 0.006 5.994 11 C -0.008 4.008 12 C -0.011 4.011 13 H 0.133 0.867 14 C -0.187 4.187 15 C -0.002 4.002 16 C -0.565 4.565 17 H 0.098 0.902 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.177 1.177 22 H -0.211 1.211 23 H -0.209 1.209 24 N -0.237 5.237 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.006 0.994 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.810 -18.859 4.538 19.482 hybrid contribution 0.084 1.319 -0.636 1.467 sum 1.894 -17.540 3.903 18.069 Atomic orbital electron populations 1.21770 0.94906 1.02562 1.01744 1.21423 0.96523 0.93650 1.03269 1.21726 0.90129 1.00318 1.02711 1.20514 0.95566 0.81793 0.89423 0.87069 1.87993 1.38056 1.72288 1.31341 1.23088 0.83735 0.96019 1.04585 1.27143 0.99755 1.01553 0.85229 1.74593 1.17751 0.93852 1.24126 1.85294 1.56612 1.30622 1.26881 1.29598 0.93367 0.94045 0.83787 1.20172 0.96331 0.89622 0.95012 0.86709 1.21739 0.93531 1.01969 1.01411 1.19040 0.93061 0.91286 0.96811 1.21531 1.07583 1.03007 1.24379 0.90224 1.25959 0.95097 1.00517 0.98141 1.70120 1.16561 1.26437 1.44450 0.85374 0.78918 0.78357 0.78262 1.17675 1.21068 1.20850 1.71906 1.18850 1.05813 1.27139 0.92813 0.93155 0.91015 0.90872 0.90485 0.90687 0.92070 0.91026 0.95533 0.87399 0.92721 0.91294 0.89554 0.99396 0.97795 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 71.98 0.71 -1.72 16 2 C -0.11 -1.94 5.83 30.59 0.18 -1.76 16 3 C -0.11 -2.65 4.90 30.59 0.15 -2.50 16 4 C 0.19 4.96 2.66 29.85 0.08 5.04 16 5 H 0.11 2.47 7.79 -2.39 -0.02 2.45 16 6 O -0.38 -9.73 9.87 -148.98 -1.47 -11.20 16 7 C 0.02 0.40 10.81 113.37 1.23 1.63 16 8 C 0.14 4.82 7.06 138.46 0.98 5.80 16 9 N -0.39 -15.42 12.16 -60.31 -0.73 -16.16 16 10 O 0.06 2.48 11.31 74.79 0.85 3.33 16 11 C 0.21 8.33 7.02 88.38 0.62 8.96 16 12 C 0.01 0.35 2.81 -11.54 -0.03 0.32 16 13 H 0.11 4.27 8.14 -2.39 -0.02 4.25 16 14 C -0.13 -4.24 8.98 71.98 0.65 -3.60 16 15 C 0.04 1.80 4.43 29.85 0.13 1.94 16 16 C -0.53 -27.47 8.41 25.60 0.22 -27.26 16 17 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 18 C 0.00 0.04 5.46 84.66 0.46 0.50 16 19 N -0.94 -55.48 13.29 21.45 0.28 -55.19 16 20 Si 0.97 42.11 29.54 68.60 2.03 44.13 16 21 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 24 N -0.50 -18.86 11.55 -303.19 -3.50 -22.36 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.07 1.26 7.82 -2.39 -0.02 1.24 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 33 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.09 2.84 6.95 -2.39 -0.02 2.82 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -64.70 339.16 3.82 -60.88 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.00 Total: 9.23 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 5.37 Total: -12.66 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -3.95 Total: -93.71 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.62 Total: -7.87 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -64.70 3.82 -60.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233375281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.371 kcal (2) G-P(sol) polarization free energy of solvation -64.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds