Wall clock time and date at job start Mon Mar 30 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 N 1.46496 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.34948 * 126.03777 * 124.99918 * 4 3 2 6 6 C 1.35325 * 107.74538 * 179.97438 * 5 4 3 7 7 C 1.50697 * 126.04020 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47155 * 220.00058 * 7 6 5 9 9 Si 1.63097 * 114.00040 * 150.00151 * 8 7 6 10 10 C 1.86294 * 109.47255 * 59.99883 * 9 8 7 11 11 C 1.86303 * 109.46839 * 179.97438 * 9 8 7 12 12 C 1.86303 * 109.46870 * 299.99374 * 9 8 7 13 13 C 1.50698 * 109.47152 * 99.99597 * 7 6 5 14 14 N 1.27940 * 119.99898 * 234.99995 * 13 7 6 15 15 Si 1.86797 * 119.99839 * 55.00379 * 13 7 6 16 16 H 1.48500 * 109.47224 * 359.97438 * 15 13 7 17 17 H 1.48493 * 109.47429 * 120.00070 * 15 13 7 18 18 H 1.48505 * 109.46920 * 240.00070 * 15 13 7 19 19 C 1.39875 * 107.91725 * 359.97438 * 6 5 4 20 20 N 1.30838 * 108.20344 * 359.74614 * 19 6 5 21 21 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 22 22 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 24 24 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 25 25 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 26 26 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 27 27 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 28 28 H 1.07991 * 126.13073 * 359.95527 * 5 4 3 29 29 H 1.08999 * 109.47034 * 339.99637 * 7 6 5 30 30 H 1.08996 * 109.47482 * 59.99784 * 10 9 8 31 31 H 1.08998 * 109.47160 * 180.02562 * 10 9 8 32 32 H 1.09004 * 109.47027 * 299.99494 * 10 9 8 33 33 H 1.09005 * 109.47167 * 59.99838 * 11 9 8 34 34 H 1.09002 * 109.47139 * 179.97438 * 11 9 8 35 35 H 1.08996 * 109.46983 * 299.99656 * 11 9 8 36 36 H 1.08993 * 109.46807 * 60.00542 * 12 9 8 37 37 H 1.09004 * 109.46529 * 180.02562 * 12 9 8 38 38 H 1.08993 * 109.47079 * 300.00248 * 12 9 8 39 39 H 0.96990 * 120.00563 * 0.02562 * 14 13 7 40 40 H 1.07994 * 125.89260 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2993 2.0683 -0.8930 6 6 5.5840 1.8252 -0.5442 7 6 6.8086 2.3289 -1.2637 8 8 7.7976 1.2980 -1.2997 9 14 8.7743 1.3611 -2.6044 10 6 9.6775 2.9903 -2.6258 11 6 10.0091 -0.0317 -2.5235 12 6 7.7526 1.1968 -4.1535 13 6 7.3598 3.5289 -0.5377 14 7 7.5384 4.6296 -1.1648 15 14 7.7825 3.4091 1.2779 16 1 7.4855 2.0384 1.7659 17 1 9.2255 3.7018 1.4706 18 1 6.9719 4.3921 2.0407 19 6 5.5744 1.0239 0.6023 20 7 4.3287 0.7987 0.9331 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.9689 2.6572 -1.7358 29 1 6.5412 2.6115 -2.2819 30 1 10.2752 3.0864 -1.7195 31 1 10.3299 3.0326 -3.4980 32 1 8.9553 3.8054 -2.6730 33 1 9.4809 -0.9852 -2.5107 34 1 10.6616 0.0101 -3.3956 35 1 10.6068 0.0648 -1.6172 36 1 7.0305 2.0119 -4.2006 37 1 8.4055 1.2384 -5.0254 38 1 7.2242 0.2435 -4.1409 39 1 7.3186 4.6920 -2.1075 40 1 6.4449 0.6578 1.1261 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233378856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:15 Heat of formation + Delta-G solvation = 13.469518 kcal Electronic energy + Delta-G solvation = -19141.460538 eV Core-core repulsion = 16309.465737 eV Total energy + Delta-G solvation = -2831.994800 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.27589 -39.06829 -36.32475 -35.72437 -32.54824 -31.73799 -29.60367 -28.64650 -28.43617 -28.03505 -26.14672 -23.33874 -22.36203 -21.80534 -20.96435 -18.20680 -17.95773 -17.38785 -16.60359 -15.90928 -15.85794 -15.47535 -15.22590 -14.39740 -14.24894 -14.20530 -14.07962 -13.87443 -13.65386 -13.43947 -13.37803 -13.31072 -13.15842 -13.05484 -12.82558 -12.76359 -12.63188 -12.41782 -12.05352 -11.81027 -11.68411 -11.47582 -11.23096 -10.75340 -10.71665 -10.31785 -10.11723 -9.31849 0.62334 0.98862 1.32089 1.39385 1.56614 1.75033 1.81840 1.85180 1.98743 2.00545 2.07356 2.42364 3.41128 3.69847 3.75950 3.82009 3.94378 4.02785 4.10553 4.28811 4.32009 4.44329 4.56810 4.59440 4.60462 4.66907 4.68925 4.71515 4.74732 4.76746 4.79952 4.93474 4.96407 5.04449 5.19416 5.32395 5.42972 5.53350 5.58384 5.71625 6.01829 6.77942 6.81749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C 0.132 3.868 4 N -0.369 5.369 5 C 0.070 3.930 6 C -0.247 4.247 7 C 0.183 3.817 8 O -0.606 6.606 9 Si 1.251 2.749 10 C -0.513 4.513 11 C -0.464 4.464 12 C -0.509 4.509 13 C -0.043 4.043 14 N -0.614 5.614 15 Si 1.061 2.939 16 H -0.234 1.234 17 H -0.249 1.249 18 H -0.253 1.253 19 C 0.074 3.926 20 N -0.292 5.292 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.173 0.827 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.323 0.677 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 -0.304 -1.873 3.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.011 3.989 4 N -0.150 5.150 5 C -0.077 4.077 6 C -0.259 4.259 7 C 0.122 3.878 8 O -0.563 6.563 9 Si 1.387 2.613 10 C -0.615 4.615 11 C -0.571 4.571 12 C -0.610 4.610 13 C -0.289 4.289 14 N -0.229 5.229 15 Si 0.875 3.125 16 H -0.157 1.157 17 H -0.173 1.173 18 H -0.176 1.176 19 C -0.113 4.113 20 N -0.113 5.113 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.105 0.895 28 H 0.190 0.810 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.141 0.859 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -2.865 -0.099 0.277 2.880 hybrid contribution 0.149 0.033 -2.793 2.798 sum -2.715 -0.066 -2.516 3.702 Atomic orbital electron populations 1.21722 0.94249 1.02766 1.02206 1.21800 0.96525 0.95163 1.03912 1.21871 0.73673 0.99311 1.04018 1.48731 1.06585 1.38924 1.20750 1.22249 0.90567 0.98787 0.96122 1.19629 0.92636 1.11133 1.02537 1.19835 0.85497 0.85837 0.96656 1.85410 1.50747 1.53264 1.66905 0.77311 0.61880 0.66249 0.55835 1.27204 1.09868 1.19456 1.04980 1.26265 1.11837 1.14016 1.04968 1.26977 1.10334 1.04632 1.19095 1.32365 0.93079 0.91185 1.12225 1.69507 1.12241 1.26029 1.15079 0.83640 0.80534 0.81027 0.67307 1.15723 1.17314 1.17644 1.24042 0.95295 0.96629 0.95294 1.77446 1.01455 1.19088 1.13294 0.92399 0.91770 0.92173 0.90217 0.91389 0.88613 0.89472 0.81005 0.91570 0.90630 0.90807 0.91627 0.90678 0.90550 0.90545 0.91768 0.90748 0.90834 0.85883 0.78957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.36 9.91 37.16 0.37 0.73 16 2 C -0.14 0.16 6.13 -26.73 -0.16 0.00 16 3 C 0.13 -0.21 6.51 -4.05 -0.03 -0.24 16 4 N -0.37 -0.38 3.68 -61.37 -0.23 -0.61 16 5 C 0.07 -0.01 11.36 -17.22 -0.20 -0.20 16 6 C -0.25 -0.23 4.62 -105.05 -0.49 -0.71 16 7 C 0.18 -0.01 2.27 -29.04 -0.07 -0.07 16 8 O -0.61 -0.05 7.69 -35.23 -0.27 -0.32 16 9 Si 1.25 -1.77 12.68 -169.99 -2.16 -3.92 16 10 C -0.51 0.20 8.04 101.05 0.81 1.01 16 11 C -0.46 0.41 8.65 101.05 0.87 1.29 16 12 C -0.51 0.51 8.56 101.05 0.87 1.37 16 13 C -0.04 -0.03 3.95 -13.90 -0.05 -0.09 16 14 N -0.61 -0.69 12.06 56.23 0.68 -0.02 16 15 Si 1.06 1.06 27.82 -169.99 -4.73 -3.67 16 16 H -0.23 0.03 5.01 56.52 0.28 0.32 16 17 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 18 H -0.25 -0.50 7.11 56.52 0.40 -0.09 16 19 C 0.07 0.16 9.81 -17.36 -0.17 -0.01 16 20 N -0.29 -0.96 12.42 30.62 0.38 -0.58 16 21 H 0.06 -0.17 8.14 -51.93 -0.42 -0.60 16 22 H 0.06 -0.13 8.14 -51.93 -0.42 -0.55 16 23 H 0.06 -0.15 8.14 -51.93 -0.42 -0.57 16 24 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 25 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 26 H 0.10 -0.38 8.07 -51.93 -0.42 -0.80 16 27 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.17 -0.58 8.06 -52.49 -0.42 -1.00 16 29 H 0.07 -0.13 5.84 -51.93 -0.30 -0.43 16 30 H 0.07 0.02 7.96 -51.93 -0.41 -0.40 16 31 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 32 H 0.06 -0.01 5.17 -51.93 -0.27 -0.28 16 33 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 34 H 0.08 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.08 -0.07 7.96 -51.93 -0.41 -0.48 16 36 H 0.06 -0.09 7.10 -51.93 -0.37 -0.46 16 37 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 38 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 39 H 0.32 -0.20 7.58 -40.82 -0.31 -0.51 16 40 H 0.19 0.16 6.53 -52.49 -0.34 -0.19 16 LS Contribution 328.34 15.07 4.95 4.95 Total: 0.00 -4.52 328.34 -6.40 -10.92 By element: Atomic # 1 Polarization: -3.05 SS G_CDS: -6.78 Total: -9.83 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 1.76 Total: 3.07 kcal Atomic # 7 Polarization: -2.04 SS G_CDS: 0.83 Total: -1.20 kcal Atomic # 8 Polarization: -0.05 SS G_CDS: -0.27 Total: -0.32 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: -6.88 Total: -7.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -4.52 -6.40 -10.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233378856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.390 kcal (2) G-P(sol) polarization free energy of solvation -4.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds