Wall clock time and date at job start Mon Mar 30 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 N 1.46496 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.34948 * 126.03777 * 124.99918 * 4 3 2 6 6 C 1.35325 * 107.74538 * 179.97438 * 5 4 3 7 7 C 1.50697 * 126.04020 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47155 * 220.00058 * 7 6 5 9 9 Si 1.63097 * 114.00040 * 150.00151 * 8 7 6 10 10 C 1.86294 * 109.47255 * 59.99883 * 9 8 7 11 11 C 1.86303 * 109.46839 * 179.97438 * 9 8 7 12 12 C 1.86303 * 109.46870 * 299.99374 * 9 8 7 13 13 C 1.50698 * 109.47152 * 99.99597 * 7 6 5 14 14 N 1.27940 * 119.99898 * 234.99995 * 13 7 6 15 15 Si 1.86797 * 119.99839 * 55.00379 * 13 7 6 16 16 H 1.48500 * 109.47224 * 359.97438 * 15 13 7 17 17 H 1.48493 * 109.47429 * 120.00070 * 15 13 7 18 18 H 1.48505 * 109.46920 * 240.00070 * 15 13 7 19 19 C 1.39875 * 107.91725 * 359.97438 * 6 5 4 20 20 N 1.30838 * 108.20344 * 359.74614 * 19 6 5 21 21 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 22 22 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 24 24 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 25 25 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 26 26 H 1.09001 * 109.47289 * 299.99953 * 3 2 1 27 27 H 1.09004 * 109.47261 * 59.99697 * 3 2 1 28 28 H 1.07991 * 126.13073 * 359.95527 * 5 4 3 29 29 H 1.08999 * 109.47034 * 339.99637 * 7 6 5 30 30 H 1.08996 * 109.47482 * 59.99784 * 10 9 8 31 31 H 1.08998 * 109.47160 * 180.02562 * 10 9 8 32 32 H 1.09004 * 109.47027 * 299.99494 * 10 9 8 33 33 H 1.09005 * 109.47167 * 59.99838 * 11 9 8 34 34 H 1.09002 * 109.47139 * 179.97438 * 11 9 8 35 35 H 1.08996 * 109.46983 * 299.99656 * 11 9 8 36 36 H 1.08993 * 109.46807 * 60.00542 * 12 9 8 37 37 H 1.09004 * 109.46529 * 180.02562 * 12 9 8 38 38 H 1.08993 * 109.47079 * 300.00248 * 12 9 8 39 39 H 0.96990 * 120.00563 * 0.02562 * 14 13 7 40 40 H 1.07994 * 125.89260 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2993 2.0683 -0.8930 6 6 5.5840 1.8252 -0.5442 7 6 6.8086 2.3289 -1.2637 8 8 7.7976 1.2980 -1.2997 9 14 8.7743 1.3611 -2.6044 10 6 9.6775 2.9903 -2.6258 11 6 10.0091 -0.0317 -2.5235 12 6 7.7526 1.1968 -4.1535 13 6 7.3598 3.5289 -0.5377 14 7 7.5384 4.6296 -1.1648 15 14 7.7825 3.4091 1.2779 16 1 7.4855 2.0384 1.7659 17 1 9.2255 3.7018 1.4706 18 1 6.9719 4.3921 2.0407 19 6 5.5744 1.0239 0.6023 20 7 4.3287 0.7987 0.9331 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.9689 2.6572 -1.7358 29 1 6.5412 2.6115 -2.2819 30 1 10.2752 3.0864 -1.7195 31 1 10.3299 3.0326 -3.4980 32 1 8.9553 3.8054 -2.6730 33 1 9.4809 -0.9852 -2.5107 34 1 10.6616 0.0101 -3.3956 35 1 10.6068 0.0648 -1.6172 36 1 7.0305 2.0119 -4.2006 37 1 8.4055 1.2384 -5.0254 38 1 7.2242 0.2435 -4.1409 39 1 7.3186 4.6920 -2.1075 40 1 6.4449 0.6578 1.1261 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233378856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:15 Heat of formation + Delta-G solvation = 22.363842 kcal Electronic energy + Delta-G solvation = -19141.074851 eV Core-core repulsion = 16309.465737 eV Total energy + Delta-G solvation = -2831.609114 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.143 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.28205 -39.05050 -36.22770 -35.74124 -32.50695 -31.75702 -29.51681 -28.55006 -28.36644 -27.94136 -26.11157 -23.28507 -22.37850 -21.76612 -20.96272 -18.16445 -17.91717 -17.38020 -16.51120 -15.92084 -15.87360 -15.43290 -15.21739 -14.31898 -14.18129 -14.09961 -14.02079 -13.79381 -13.64248 -13.38286 -13.23635 -13.22090 -13.09309 -12.97500 -12.82148 -12.75356 -12.59872 -12.29636 -11.99550 -11.78262 -11.68570 -11.53573 -11.24566 -10.68342 -10.66898 -10.36274 -10.10800 -9.32536 0.61492 0.97586 1.26076 1.45307 1.58928 1.69156 1.83226 1.91208 1.91859 1.98906 2.10762 2.49934 3.51366 3.76435 3.88688 3.93072 4.03022 4.11433 4.24521 4.37815 4.44358 4.55562 4.60194 4.70264 4.72717 4.75910 4.77302 4.78735 4.81943 4.82617 4.87172 4.94721 5.10599 5.16651 5.34111 5.38645 5.52688 5.59968 5.66061 5.67089 6.10403 6.74349 6.83854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.127 3.873 4 N -0.373 5.373 5 C 0.076 3.924 6 C -0.259 4.259 7 C 0.183 3.817 8 O -0.617 6.617 9 Si 1.286 2.714 10 C -0.522 4.522 11 C -0.477 4.477 12 C -0.513 4.513 13 C -0.039 4.039 14 N -0.627 5.627 15 Si 1.058 2.942 16 H -0.222 1.222 17 H -0.258 1.258 18 H -0.269 1.269 19 C 0.062 3.938 20 N -0.331 5.331 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.126 0.874 27 H 0.089 0.911 28 H 0.208 0.792 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.333 0.667 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 0.154 -3.196 4.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.007 3.993 4 N -0.154 5.154 5 C -0.072 4.072 6 C -0.272 4.272 7 C 0.122 3.878 8 O -0.574 6.574 9 Si 1.421 2.579 10 C -0.623 4.623 11 C -0.582 4.582 12 C -0.615 4.615 13 C -0.285 4.285 14 N -0.242 5.242 15 Si 0.874 3.126 16 H -0.144 1.144 17 H -0.182 1.182 18 H -0.194 1.194 19 C -0.123 4.123 20 N -0.152 5.152 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.144 0.856 27 H 0.107 0.893 28 H 0.225 0.775 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.549 0.346 -1.036 3.714 hybrid contribution 0.369 -0.093 -2.365 2.396 sum -3.180 0.254 -3.401 4.664 Atomic orbital electron populations 1.21694 0.93201 1.02708 1.02941 1.21707 0.97326 0.95382 1.02387 1.22108 0.72485 0.99119 1.05605 1.48954 1.07378 1.38636 1.20476 1.22824 0.90100 0.97967 0.96323 1.19797 0.93540 1.11385 1.02451 1.19871 0.85074 0.85283 0.97540 1.85404 1.51011 1.53358 1.67664 0.76692 0.60972 0.64980 0.55254 1.27332 1.10027 1.20243 1.04727 1.26403 1.12333 1.14368 1.05139 1.27015 1.10587 1.04700 1.19221 1.32173 0.92971 0.91589 1.11793 1.69484 1.12490 1.26320 1.15948 0.83654 0.79640 0.81252 0.68065 1.14441 1.18203 1.19420 1.24206 0.95198 0.96979 0.95954 1.77378 1.02223 1.20679 1.14939 0.91115 0.92256 0.91930 0.92528 0.92103 0.85586 0.89293 0.77536 0.89327 0.91486 0.90434 0.91689 0.90928 0.90005 0.90796 0.91022 0.90479 0.91233 0.84751 0.78812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.76 9.91 71.98 0.71 1.47 16 2 C -0.13 0.28 6.13 30.60 0.19 0.47 16 3 C 0.13 -0.50 6.51 86.38 0.56 0.06 16 4 N -0.37 -0.66 3.68 -348.07 -1.28 -1.94 16 5 C 0.08 -0.11 11.36 83.54 0.95 0.84 16 6 C -0.26 -0.38 4.62 -20.14 -0.09 -0.47 16 7 C 0.18 -0.14 2.27 29.10 0.07 -0.08 16 8 O -0.62 0.06 7.69 -148.98 -1.15 -1.09 16 9 Si 1.29 -4.18 12.68 68.60 0.87 -3.31 16 10 C -0.52 0.54 8.04 113.37 0.91 1.45 16 11 C -0.48 0.80 8.65 113.37 0.98 1.78 16 12 C -0.51 1.60 8.56 113.37 0.97 2.57 16 13 C -0.04 -0.05 3.95 88.67 0.35 0.30 16 14 N -0.63 -1.17 12.06 24.11 0.29 -0.88 16 15 Si 1.06 3.13 27.82 68.60 1.91 5.04 16 16 H -0.22 -0.17 5.01 99.48 0.50 0.33 16 17 H -0.26 -1.05 7.11 99.48 0.71 -0.34 16 18 H -0.27 -1.49 7.11 99.48 0.71 -0.79 16 19 C 0.06 0.32 9.81 85.24 0.84 1.15 16 20 N -0.33 -2.48 12.42 -57.02 -0.71 -3.18 16 21 H 0.07 -0.52 8.14 -2.39 -0.02 -0.54 16 22 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 23 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 24 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 25 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.13 -1.28 8.07 -2.39 -0.02 -1.30 16 27 H 0.09 -0.38 8.14 -2.38 -0.02 -0.40 16 28 H 0.21 -1.99 8.06 -2.92 -0.02 -2.01 16 29 H 0.09 -0.49 5.84 -2.39 -0.01 -0.50 16 30 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 31 H 0.08 -0.15 7.96 -2.39 -0.02 -0.17 16 32 H 0.06 -0.06 5.17 -2.38 -0.01 -0.07 16 33 H 0.07 -0.08 7.96 -2.38 -0.02 -0.10 16 34 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 35 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 36 H 0.07 -0.33 7.10 -2.39 -0.02 -0.34 16 37 H 0.08 -0.27 7.96 -2.38 -0.02 -0.28 16 38 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 39 H 0.33 -0.72 7.58 -92.72 -0.70 -1.43 16 40 H 0.20 0.58 6.53 -2.91 -0.02 0.56 16 Total: 0.00 -11.48 328.34 7.23 -4.25 By element: Atomic # 1 Polarization: -9.30 SS G_CDS: 0.85 Total: -8.44 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 6.44 Total: 9.55 kcal Atomic # 7 Polarization: -4.31 SS G_CDS: -1.70 Total: -6.00 kcal Atomic # 8 Polarization: 0.06 SS G_CDS: -1.15 Total: -1.09 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: 2.78 Total: 1.73 kcal Total: -11.48 7.23 -4.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233378856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.617 kcal (2) G-P(sol) polarization free energy of solvation -11.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds