Wall clock time and date at job start Mon Mar 30 2020 07:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47091 * 2 1 4 4 C 1.42905 * 114.00134 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47079 * 300.00052 * 4 3 2 6 6 C 1.53005 * 109.46812 * 59.99665 * 4 3 2 7 7 C 1.50703 * 109.47264 * 179.97438 * 4 3 2 8 8 N 1.29944 * 126.28658 * 125.02313 * 7 4 3 9 9 O 1.21294 * 110.25041 * 179.97438 * 8 7 4 10 10 C 1.33648 * 109.81407 * 0.02562 * 9 8 7 11 11 C 1.50693 * 126.55244 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47024 * 269.97394 * 11 10 9 13 13 H 1.08998 * 109.47405 * 305.00044 * 12 11 10 14 14 C 1.53001 * 109.47208 * 65.00427 * 12 11 10 15 15 C 1.50701 * 109.47039 * 185.00183 * 12 11 10 16 16 H 1.08003 * 120.00214 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 12 11 18 18 N 1.31513 * 119.99805 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00314 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46897 * 59.99597 * 19 17 15 21 21 H 1.48493 * 109.47553 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46859 * 299.99854 * 19 17 15 23 23 N 1.31133 * 106.89083 * 359.76578 * 10 9 8 24 24 H 1.08996 * 109.47307 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47184 * 300.00269 * 1 2 3 26 26 H 1.09003 * 109.47090 * 59.99900 * 1 2 3 27 27 H 1.08994 * 109.47303 * 240.00013 * 2 1 3 28 28 H 1.09002 * 109.47060 * 119.99543 * 2 1 3 29 29 H 1.09004 * 109.47059 * 59.99375 * 5 4 3 30 30 H 1.08992 * 109.47060 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.46930 * 299.99773 * 5 4 3 32 32 H 1.09001 * 109.46812 * 60.00403 * 6 4 3 33 33 H 1.09002 * 109.46935 * 180.02562 * 6 4 3 34 34 H 1.08992 * 109.47061 * 300.00036 * 6 4 3 35 35 H 1.09001 * 109.46971 * 29.97578 * 11 10 9 36 36 H 1.09001 * 109.47320 * 149.97413 * 11 10 9 37 37 H 1.08999 * 109.46499 * 299.99539 * 14 12 11 38 38 H 1.08998 * 109.47250 * 59.99523 * 14 12 11 39 39 H 1.09000 * 109.46978 * 180.02562 * 14 12 11 40 40 H 0.97006 * 119.99908 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.9957 0.7816 1.2502 6 6 3.9967 0.7812 -1.2483 7 6 3.8195 2.9162 -0.0001 8 7 4.5982 3.5048 0.8577 9 8 4.7135 4.6804 0.5823 10 6 3.9971 4.9622 -0.5102 11 6 3.8717 6.3068 -1.1790 12 6 2.6873 7.0666 -0.5785 13 1 1.7872 6.4568 -0.6564 14 6 2.9707 7.3719 0.8937 15 6 2.4859 8.3576 -1.3294 16 1 3.1378 8.6110 -2.1524 17 6 1.4701 9.2158 -0.9652 18 7 0.6766 8.9075 0.0372 19 14 1.2209 10.8164 -1.8955 20 1 0.9457 10.5206 -3.3245 21 1 0.0713 11.5539 -1.3128 22 1 2.4475 11.6468 -1.7892 23 7 3.4278 3.8441 -0.8913 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7146 -0.2715 1.2503 30 1 5.0823 0.8673 1.2504 31 1 3.5926 1.2653 2.1399 32 1 3.5943 1.2646 -2.1386 33 1 5.0834 0.8668 -1.2477 34 1 3.7157 -0.2719 -1.2482 35 1 4.7869 6.8775 -1.0218 36 1 3.7096 6.1672 -2.2478 37 1 3.1163 6.4381 1.4368 38 1 3.8708 7.9816 0.9716 39 1 2.1267 7.9128 1.3216 40 1 -0.0383 9.5111 0.2933 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233721893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:16 Heat of formation + Delta-G solvation = 5.541241 kcal Electronic energy + Delta-G solvation = -20964.171927 eV Core-core repulsion = 17782.282622 eV Total energy + Delta-G solvation = -3181.889304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.10531 -39.17837 -35.73438 -35.23715 -33.37830 -32.02884 -30.81833 -30.32747 -27.68257 -26.48496 -25.20150 -24.75330 -23.11094 -22.02666 -20.32527 -19.48312 -17.70941 -17.47595 -16.30003 -16.20338 -15.73788 -15.47996 -14.62358 -14.15554 -13.75019 -13.52525 -13.43514 -12.80725 -12.69587 -12.53435 -12.30796 -12.17151 -11.94155 -11.81925 -11.66622 -11.37392 -11.23726 -11.17652 -10.94358 -10.80763 -10.69305 -10.50687 -10.19268 -10.00447 -9.87263 -9.63335 -9.11389 -8.94153 -8.37958 -6.02673 -4.11331 1.60829 2.57183 3.31670 3.34272 3.36842 3.39397 3.49940 3.95470 4.39959 4.44051 4.63372 4.88236 5.01061 5.08167 5.19031 5.27595 5.28683 5.31837 5.40696 5.54351 5.64706 5.72347 5.80623 5.90525 6.01160 6.05327 6.08757 6.18684 6.23633 6.47409 6.57655 6.86496 7.06969 7.11537 7.23941 7.66016 7.87597 8.06562 8.31881 8.63105 8.90965 9.54041 11.03512 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.004362 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.920778 B = 6417.216777 C = 6964.652513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.213 3.787 5 C -0.172 4.172 6 C -0.172 4.172 7 C 0.175 3.825 8 N -0.388 5.388 9 O 0.073 5.927 10 C 0.216 3.784 11 C -0.026 4.026 12 C 0.050 3.950 13 H 0.035 0.965 14 C -0.141 4.141 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 N -0.479 5.479 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.004 0.996 38 H 0.032 0.968 39 H 0.086 0.914 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.170 -16.480 -0.117 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.171 3.829 5 C -0.230 4.230 6 C -0.230 4.230 7 C -0.099 4.099 8 N -0.098 5.098 9 O 0.014 5.986 10 C -0.003 4.003 11 C -0.065 4.065 12 C 0.030 3.970 13 H 0.054 0.946 14 C -0.198 4.198 15 C -0.556 4.556 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.212 5.212 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.023 0.977 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.996 -16.945 0.392 17.670 hybrid contribution -0.090 0.842 -0.387 0.931 sum 4.906 -16.102 0.005 16.833 Atomic orbital electron populations 1.21735 0.93468 1.02021 1.03610 1.22562 0.95718 0.83921 1.00193 1.88104 1.18591 1.26468 1.95024 1.19167 0.82461 0.85182 0.96041 1.22339 1.02434 1.00651 0.97568 1.22365 1.01843 1.00804 0.97959 1.25023 0.96666 0.98070 0.90115 1.74505 1.21774 0.91440 1.22121 1.85289 1.54417 1.19848 1.38997 1.29602 0.87249 0.98819 0.84643 1.20846 1.03641 0.82935 0.99116 1.18738 0.90703 0.94631 0.92885 0.94645 1.21883 1.01981 0.97901 0.98070 1.20982 1.15140 1.03403 1.16069 0.92173 1.24948 0.95598 0.98234 0.95033 1.69890 1.18270 1.37117 1.27206 0.86597 0.77674 0.83292 0.80070 1.20178 1.21318 1.20177 1.71907 1.23810 0.98560 1.26951 0.91141 0.91771 0.91541 0.92917 0.93085 0.91179 0.90726 0.91065 0.90403 0.91290 0.91082 0.89218 0.88206 0.97723 0.94932 0.89547 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.16 0.38 -1.14 16 2 C 0.05 0.58 5.86 37.16 0.22 0.79 16 3 O -0.36 -5.71 9.97 -35.23 -0.35 -6.06 16 4 C 0.21 3.12 1.10 -91.77 -0.10 3.02 16 5 C -0.17 -2.07 7.76 37.16 0.29 -1.78 16 6 C -0.17 -2.03 8.23 37.16 0.31 -1.73 16 7 C 0.17 3.23 6.77 -156.38 -1.06 2.17 16 8 N -0.39 -7.33 11.48 30.89 0.35 -6.97 16 9 O 0.07 1.41 10.75 18.09 0.19 1.61 16 10 C 0.22 4.30 6.92 -13.06 -0.09 4.21 16 11 C -0.03 -0.52 5.25 -27.89 -0.15 -0.67 16 12 C 0.05 1.22 2.29 -91.77 -0.21 1.01 16 13 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 14 C -0.14 -3.39 8.78 37.16 0.33 -3.06 16 15 C -0.52 -13.59 8.56 -34.44 -0.29 -13.88 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.15 11.32 55.43 0.63 -24.53 16 19 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 N -0.48 -9.77 11.55 -9.87 -0.11 -9.89 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.49 6.42 -51.93 -0.33 0.16 16 28 H 0.05 0.48 6.42 -51.93 -0.33 0.14 16 29 H 0.07 0.64 6.54 -51.93 -0.34 0.30 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.64 6.54 -51.93 -0.34 0.30 16 35 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 37 H 0.00 0.09 6.93 -51.93 -0.36 -0.27 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 327.58 15.07 4.94 4.94 Total: -1.00 -30.06 327.58 -6.06 -36.13 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.21 Total: -1.51 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.48 Total: -9.42 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.87 Total: -41.38 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.16 Total: -4.45 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.06 -6.06 -36.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233721893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.667 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds