Wall clock time and date at job start Mon Mar 30 2020 07:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47091 * 2 1 4 4 C 1.42905 * 114.00134 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47079 * 300.00052 * 4 3 2 6 6 C 1.53005 * 109.46812 * 59.99665 * 4 3 2 7 7 C 1.50703 * 109.47264 * 179.97438 * 4 3 2 8 8 N 1.29944 * 126.28658 * 125.02313 * 7 4 3 9 9 O 1.21294 * 110.25041 * 179.97438 * 8 7 4 10 10 C 1.33648 * 109.81407 * 0.02562 * 9 8 7 11 11 C 1.50693 * 126.55244 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47024 * 269.97394 * 11 10 9 13 13 H 1.08998 * 109.47405 * 305.00044 * 12 11 10 14 14 C 1.53001 * 109.47208 * 65.00427 * 12 11 10 15 15 C 1.50701 * 109.47039 * 185.00183 * 12 11 10 16 16 H 1.08003 * 120.00214 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00116 * 180.02562 * 15 12 11 18 18 N 1.31513 * 119.99805 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00314 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46897 * 59.99597 * 19 17 15 21 21 H 1.48493 * 109.47553 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46859 * 299.99854 * 19 17 15 23 23 N 1.31133 * 106.89083 * 359.76578 * 10 9 8 24 24 H 1.08996 * 109.47307 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47184 * 300.00269 * 1 2 3 26 26 H 1.09003 * 109.47090 * 59.99900 * 1 2 3 27 27 H 1.08994 * 109.47303 * 240.00013 * 2 1 3 28 28 H 1.09002 * 109.47060 * 119.99543 * 2 1 3 29 29 H 1.09004 * 109.47059 * 59.99375 * 5 4 3 30 30 H 1.08992 * 109.47060 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.46930 * 299.99773 * 5 4 3 32 32 H 1.09001 * 109.46812 * 60.00403 * 6 4 3 33 33 H 1.09002 * 109.46935 * 180.02562 * 6 4 3 34 34 H 1.08992 * 109.47061 * 300.00036 * 6 4 3 35 35 H 1.09001 * 109.46971 * 29.97578 * 11 10 9 36 36 H 1.09001 * 109.47320 * 149.97413 * 11 10 9 37 37 H 1.08999 * 109.46499 * 299.99539 * 14 12 11 38 38 H 1.08998 * 109.47250 * 59.99523 * 14 12 11 39 39 H 1.09000 * 109.46978 * 180.02562 * 14 12 11 40 40 H 0.97006 * 119.99908 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.9957 0.7816 1.2502 6 6 3.9967 0.7812 -1.2483 7 6 3.8195 2.9162 -0.0001 8 7 4.5982 3.5048 0.8577 9 8 4.7135 4.6804 0.5823 10 6 3.9971 4.9622 -0.5102 11 6 3.8717 6.3068 -1.1790 12 6 2.6873 7.0666 -0.5785 13 1 1.7872 6.4568 -0.6564 14 6 2.9707 7.3719 0.8937 15 6 2.4859 8.3576 -1.3294 16 1 3.1378 8.6110 -2.1524 17 6 1.4701 9.2158 -0.9652 18 7 0.6766 8.9075 0.0372 19 14 1.2209 10.8164 -1.8955 20 1 0.9457 10.5206 -3.3245 21 1 0.0713 11.5539 -1.3128 22 1 2.4475 11.6468 -1.7892 23 7 3.4278 3.8441 -0.8913 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7146 -0.2715 1.2503 30 1 5.0823 0.8673 1.2504 31 1 3.5926 1.2653 2.1399 32 1 3.5943 1.2646 -2.1386 33 1 5.0834 0.8668 -1.2477 34 1 3.7157 -0.2719 -1.2482 35 1 4.7869 6.8775 -1.0218 36 1 3.7096 6.1672 -2.2478 37 1 3.1163 6.4381 1.4368 38 1 3.8708 7.9816 0.9716 39 1 2.1267 7.9128 1.3216 40 1 -0.0383 9.5111 0.2933 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233721893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:15 Heat of formation + Delta-G solvation = -14.095139 kcal Electronic energy + Delta-G solvation = -20965.023424 eV Core-core repulsion = 17782.282622 eV Total energy + Delta-G solvation = -3182.740802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.59998 -40.22588 -37.47534 -36.72093 -34.81359 -33.59725 -32.18524 -31.52362 -28.76226 -28.09127 -27.23206 -25.97188 -24.45910 -23.25558 -21.88258 -20.94591 -19.19974 -18.88894 -18.21222 -17.43597 -16.68213 -16.64057 -16.55020 -15.65957 -15.20426 -14.73066 -14.71054 -14.53962 -13.72214 -13.52055 -13.51096 -13.37911 -13.12591 -13.03199 -12.94475 -12.88788 -12.79785 -12.71845 -12.53231 -12.23872 -12.16124 -12.02079 -11.89994 -11.73064 -11.63324 -10.95449 -10.80579 -10.56389 -10.43884 -8.08006 -6.23564 0.09567 1.11782 1.48905 1.50399 1.57601 1.85762 2.29762 2.47539 2.72578 3.21776 3.22586 3.62301 3.79708 4.04267 4.14896 4.28593 4.37013 4.38851 4.44977 4.49180 4.51355 4.57870 4.65638 4.74624 4.81105 4.88209 4.95253 4.98467 5.01811 5.05946 5.09768 5.18187 5.25237 5.30723 5.60558 5.84369 6.04634 6.16720 6.28059 6.87345 7.12059 7.46049 8.97873 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.004362 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.920778 B = 6417.216777 C = 6964.652513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.401 6.401 4 C 0.203 3.797 5 C -0.165 4.165 6 C -0.165 4.165 7 C 0.172 3.828 8 N -0.393 5.393 9 O 0.066 5.934 10 C 0.211 3.789 11 C -0.015 4.015 12 C 0.050 3.950 13 H -0.008 1.008 14 C -0.129 4.129 15 C -0.529 4.529 16 H 0.073 0.927 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.265 1.265 23 N -0.501 5.501 24 H 0.102 0.898 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.008 0.992 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.274 -17.661 -0.884 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.321 6.321 4 C 0.162 3.838 5 C -0.223 4.223 6 C -0.223 4.223 7 C -0.102 4.102 8 N -0.105 5.105 9 O 0.010 5.990 10 C -0.008 4.008 11 C -0.054 4.054 12 C 0.030 3.970 13 H 0.010 0.990 14 C -0.187 4.187 15 C -0.567 4.567 16 H 0.092 0.908 17 C -0.188 4.188 18 N -0.561 5.561 19 Si 0.787 3.213 20 H -0.195 1.195 21 H -0.217 1.217 22 H -0.190 1.190 23 N -0.235 5.235 24 H 0.120 0.880 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.027 0.973 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.122 -18.124 -0.379 19.134 hybrid contribution -0.479 1.123 -0.122 1.227 sum 5.643 -17.001 -0.501 17.920 Atomic orbital electron populations 1.21789 0.93264 1.03634 1.02157 1.22870 0.95965 0.82214 1.02066 1.88055 1.19140 1.29472 1.95402 1.19553 0.82617 0.83130 0.98499 1.22317 1.02461 1.02145 0.95370 1.22339 1.02090 1.02208 0.95638 1.25879 0.95658 0.99668 0.88991 1.74485 1.22460 0.91230 1.22309 1.85266 1.54538 1.20317 1.38850 1.29545 0.87532 0.98866 0.84874 1.20653 1.02722 0.82777 0.99239 1.18598 0.90929 0.94147 0.93314 0.98999 1.21714 1.01220 0.97840 0.97879 1.21408 1.15164 1.03846 1.16313 0.90837 1.25807 0.95465 1.01685 0.95832 1.70054 1.18906 1.38318 1.28856 0.85551 0.77697 0.79252 0.78799 1.19477 1.21680 1.18960 1.71915 1.24170 0.99298 1.28070 0.87968 0.93180 0.93035 0.90925 0.91077 0.87799 0.90222 0.92914 0.92199 0.90471 0.87763 0.86581 0.87202 0.97314 0.93501 0.92545 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 10.28 71.98 0.74 -2.12 16 2 C 0.04 0.87 5.86 71.98 0.42 1.30 16 3 O -0.40 -12.31 9.97 -148.98 -1.49 -13.79 16 4 C 0.20 5.70 1.10 -11.54 -0.01 5.68 16 5 C -0.17 -3.63 7.76 71.98 0.56 -3.08 16 6 C -0.16 -3.55 8.23 71.98 0.59 -2.95 16 7 C 0.17 6.30 6.77 138.47 0.94 7.23 16 8 N -0.39 -14.74 11.48 -60.34 -0.69 -15.43 16 9 O 0.07 2.56 10.75 74.80 0.80 3.37 16 10 C 0.21 8.40 6.92 88.38 0.61 9.01 16 11 C -0.02 -0.59 5.25 29.84 0.16 -0.43 16 12 C 0.05 2.47 2.29 -11.54 -0.03 2.44 16 13 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 14 C -0.13 -6.30 8.78 71.98 0.63 -5.66 16 15 C -0.53 -27.67 8.56 25.60 0.22 -27.45 16 16 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 17 C 0.01 0.58 5.30 84.65 0.45 1.03 16 18 N -0.92 -53.50 11.32 21.45 0.24 -53.26 16 19 Si 0.96 42.32 29.54 68.60 2.03 44.35 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 23 N -0.50 -20.56 11.55 -303.23 -3.50 -24.06 16 24 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.13 6.42 -2.39 -0.02 1.12 16 28 H 0.07 1.11 6.42 -2.39 -0.02 1.09 16 29 H 0.10 1.53 6.54 -2.39 -0.02 1.52 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.10 1.51 6.54 -2.39 -0.02 1.49 16 35 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 37 H 0.01 0.37 6.93 -2.39 -0.02 0.36 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 40 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -66.17 327.58 3.69 -62.48 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.02 Total: 11.34 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 5.28 Total: -15.00 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -3.95 Total: -92.75 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.68 Total: -10.42 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -66.17 3.69 -62.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233721893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.384 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds