Wall clock time and date at job start Mon Mar 30 2020 07:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42899 * 109.47332 * 2 1 4 4 C 1.42895 * 114.00258 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47129 * 59.99773 * 4 3 2 6 6 C 1.52997 * 109.47016 * 300.00256 * 4 3 2 7 7 C 1.50701 * 109.47300 * 180.02562 * 4 3 2 8 8 N 1.29944 * 126.28485 * 239.97786 * 7 4 3 9 9 O 1.21303 * 110.24956 * 179.97438 * 8 7 4 10 10 C 1.33645 * 109.81147 * 0.02562 * 9 8 7 11 11 C 1.50696 * 126.55447 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47084 * 270.02449 * 11 10 9 13 13 H 1.09000 * 109.47211 * 54.99065 * 12 11 10 14 14 C 1.53005 * 109.46471 * 294.99545 * 12 11 10 15 15 C 1.50701 * 109.47211 * 175.00039 * 12 11 10 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 12 11 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 12 11 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 12 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 12 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 N 1.31133 * 106.89427 * 0.22119 * 10 9 8 24 24 H 1.08999 * 109.46932 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.46985 * 300.00134 * 1 2 3 26 26 H 1.09006 * 109.46717 * 60.00248 * 1 2 3 27 27 H 1.09007 * 109.47144 * 239.99697 * 2 1 3 28 28 H 1.08997 * 109.46963 * 120.00295 * 2 1 3 29 29 H 1.09000 * 109.47322 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47226 * 300.00447 * 5 4 3 31 31 H 1.09005 * 109.47015 * 60.00410 * 5 4 3 32 32 H 1.09002 * 109.47195 * 299.99859 * 6 4 3 33 33 H 1.09003 * 109.47485 * 60.00015 * 6 4 3 34 34 H 1.09000 * 109.47298 * 179.97438 * 6 4 3 35 35 H 1.08992 * 109.47460 * 150.02007 * 11 10 9 36 36 H 1.09007 * 109.46722 * 30.01753 * 11 10 9 37 37 H 1.09004 * 109.46658 * 179.97438 * 14 12 11 38 38 H 1.08995 * 109.47438 * 299.99599 * 14 12 11 39 39 H 1.08996 * 109.47069 * 60.00459 * 14 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9968 0.7811 -1.2483 6 6 3.9957 0.7815 1.2501 7 6 3.8196 2.9161 0.0012 8 7 4.5246 3.5243 -0.9053 9 8 4.6627 4.6939 -0.6150 10 6 4.0404 4.9506 0.5395 11 6 3.9725 6.2798 1.2463 12 6 5.1565 6.4077 2.2070 13 1 6.0866 6.2531 1.6600 14 6 5.0332 5.3555 3.3110 15 6 5.1579 7.7834 2.8222 16 1 4.3914 8.4955 2.5544 17 6 6.1415 8.1350 3.7222 18 7 7.0751 7.2680 4.0480 19 14 6.1478 9.8428 4.4788 20 1 4.9994 10.6223 3.9510 21 1 6.0337 9.7306 5.9552 22 1 7.4157 10.5335 4.1315 23 7 3.5047 3.8236 0.9425 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.0834 0.8676 -1.2481 30 1 3.7157 -0.2720 -1.2482 31 1 3.5945 1.2646 -2.1385 32 1 3.5926 1.2652 2.1399 33 1 3.7147 -0.2717 1.2502 34 1 5.0824 0.8672 1.2504 35 1 3.0405 6.3458 1.8075 36 1 4.0122 7.0843 0.5118 37 1 5.8769 5.4462 3.9952 38 1 4.1032 5.5099 3.8579 39 1 5.0321 4.3605 2.8660 40 1 7.7673 7.5155 4.6809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233722017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:19 Heat of formation + Delta-G solvation = 6.118475 kcal Electronic energy + Delta-G solvation = -20955.815019 eV Core-core repulsion = 17773.950745 eV Total energy + Delta-G solvation = -3181.864274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.10591 -39.20201 -35.82828 -35.17783 -33.35246 -32.03163 -30.85456 -30.36084 -27.67357 -26.46632 -25.19640 -24.76401 -23.06745 -22.06595 -20.48918 -19.36977 -17.84947 -17.20676 -16.46512 -16.15749 -15.77810 -15.49645 -14.66273 -14.27797 -13.75806 -13.63994 -13.17190 -12.77331 -12.73986 -12.53639 -12.31681 -12.22232 -11.98000 -11.92640 -11.62336 -11.40412 -11.26136 -11.15453 -10.96826 -10.73270 -10.62253 -10.50842 -10.16702 -10.01967 -9.87748 -9.66821 -9.12578 -8.91914 -8.40364 -6.04962 -4.13230 1.60180 2.57141 3.28033 3.34196 3.36592 3.39377 3.47250 3.98106 4.37634 4.42371 4.65812 4.84102 5.01219 5.04317 5.14015 5.26068 5.26816 5.34516 5.42497 5.57846 5.63890 5.72474 5.73918 5.92806 5.96093 6.03299 6.11580 6.18915 6.25221 6.48227 6.58003 6.93414 7.06399 7.14982 7.26418 7.64934 7.85605 8.06551 8.31090 8.62718 8.89478 9.52393 11.01217 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034745 B = 0.003948 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.676369 B = 7090.245620 C = 7213.707954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.367 6.367 4 C 0.214 3.786 5 C -0.172 4.172 6 C -0.173 4.173 7 C 0.175 3.825 8 N -0.387 5.387 9 O 0.070 5.930 10 C 0.215 3.785 11 C -0.026 4.026 12 C 0.050 3.950 13 H 0.031 0.969 14 C -0.137 4.137 15 C -0.516 4.516 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.475 5.475 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.030 0.970 39 H 0.010 0.990 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.090 -13.485 -7.689 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.286 6.286 4 C 0.173 3.827 5 C -0.230 4.230 6 C -0.231 4.231 7 C -0.099 4.099 8 N -0.098 5.098 9 O 0.012 5.988 10 C -0.004 4.004 11 C -0.066 4.066 12 C 0.030 3.970 13 H 0.050 0.950 14 C -0.194 4.194 15 C -0.554 4.554 16 H 0.079 0.921 17 C -0.139 4.139 18 N -0.525 5.525 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.208 5.208 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.029 0.971 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.988 -14.026 -8.010 18.019 hybrid contribution 0.300 0.809 0.520 1.008 sum -7.687 -13.217 -7.490 17.026 Atomic orbital electron populations 1.21732 0.93577 1.02085 1.03331 1.22562 0.95550 0.83951 1.00387 1.88037 1.18910 1.26573 1.95086 1.19165 0.82141 0.85241 0.96179 1.22335 1.02575 1.00615 0.97450 1.22367 1.02197 1.00602 0.97916 1.25014 0.97848 0.98225 0.88779 1.74513 1.20877 0.91485 1.22913 1.85274 1.56987 1.20607 1.35883 1.29605 0.88055 0.99205 0.83565 1.20845 1.04407 0.83637 0.97670 1.18739 0.90654 0.96090 0.91511 0.95040 1.21817 1.01862 0.95157 1.00606 1.21072 1.11869 0.97223 1.25285 0.92058 1.24949 0.95294 0.97272 0.96356 1.69908 1.14413 1.34279 1.33919 0.86485 0.77975 0.84231 0.78998 1.19635 1.21021 1.21027 1.71929 1.23972 0.98677 1.26196 0.91100 0.91629 0.91950 0.93047 0.92768 0.90677 0.91192 0.91142 0.90199 0.91190 0.91089 0.88279 0.89133 0.89971 0.95122 0.97101 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.53 5.86 37.16 0.22 0.75 16 3 O -0.37 -5.39 9.97 -35.23 -0.35 -5.75 16 4 C 0.21 3.12 1.10 -91.77 -0.10 3.02 16 5 C -0.17 -2.05 7.75 37.16 0.29 -1.77 16 6 C -0.17 -2.23 8.23 37.16 0.31 -1.92 16 7 C 0.17 3.20 6.78 -156.38 -1.06 2.14 16 8 N -0.39 -7.28 11.47 30.90 0.35 -6.93 16 9 O 0.07 1.37 11.31 18.10 0.20 1.57 16 10 C 0.21 4.23 6.98 -13.06 -0.09 4.14 16 11 C -0.03 -0.52 5.26 -27.88 -0.15 -0.67 16 12 C 0.05 1.19 2.29 -91.77 -0.21 0.98 16 13 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.14 -3.31 8.78 37.16 0.33 -2.98 16 15 C -0.52 -13.42 8.56 -34.44 -0.29 -13.71 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 18 N -0.89 -24.83 11.33 55.43 0.63 -24.20 16 19 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 N -0.47 -9.50 10.86 -9.87 -0.11 -9.60 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.45 6.42 -51.92 -0.33 0.12 16 28 H 0.05 0.50 6.41 -51.93 -0.33 0.16 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.64 6.54 -51.93 -0.34 0.30 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.69 6.54 -51.93 -0.34 0.35 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 37 H 0.08 2.19 6.08 -51.93 -0.32 1.88 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.01 0.23 6.84 -51.93 -0.35 -0.12 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -29.42 327.42 -6.04 -35.46 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.21 Total: -1.69 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -0.48 Total: -9.37 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.88 Total: -40.73 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.15 Total: -4.17 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.42 -6.04 -35.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233722017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.580 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds