Wall clock time and date at job start Mon Mar 30 2020 07:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42899 * 109.47332 * 2 1 4 4 C 1.42895 * 114.00258 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47129 * 59.99773 * 4 3 2 6 6 C 1.52997 * 109.47016 * 300.00256 * 4 3 2 7 7 C 1.50701 * 109.47300 * 180.02562 * 4 3 2 8 8 N 1.29944 * 126.28485 * 239.97786 * 7 4 3 9 9 O 1.21303 * 110.24956 * 179.97438 * 8 7 4 10 10 C 1.33645 * 109.81147 * 0.02562 * 9 8 7 11 11 C 1.50696 * 126.55447 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47084 * 270.02449 * 11 10 9 13 13 H 1.09000 * 109.47211 * 54.99065 * 12 11 10 14 14 C 1.53005 * 109.46471 * 294.99545 * 12 11 10 15 15 C 1.50701 * 109.47211 * 175.00039 * 12 11 10 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 12 11 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 12 11 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 12 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 12 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 N 1.31133 * 106.89427 * 0.22119 * 10 9 8 24 24 H 1.08999 * 109.46932 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.46985 * 300.00134 * 1 2 3 26 26 H 1.09006 * 109.46717 * 60.00248 * 1 2 3 27 27 H 1.09007 * 109.47144 * 239.99697 * 2 1 3 28 28 H 1.08997 * 109.46963 * 120.00295 * 2 1 3 29 29 H 1.09000 * 109.47322 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47226 * 300.00447 * 5 4 3 31 31 H 1.09005 * 109.47015 * 60.00410 * 5 4 3 32 32 H 1.09002 * 109.47195 * 299.99859 * 6 4 3 33 33 H 1.09003 * 109.47485 * 60.00015 * 6 4 3 34 34 H 1.09000 * 109.47298 * 179.97438 * 6 4 3 35 35 H 1.08992 * 109.47460 * 150.02007 * 11 10 9 36 36 H 1.09007 * 109.46722 * 30.01753 * 11 10 9 37 37 H 1.09004 * 109.46658 * 179.97438 * 14 12 11 38 38 H 1.08995 * 109.47438 * 299.99599 * 14 12 11 39 39 H 1.08996 * 109.47069 * 60.00459 * 14 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9968 0.7811 -1.2483 6 6 3.9957 0.7815 1.2501 7 6 3.8196 2.9161 0.0012 8 7 4.5246 3.5243 -0.9053 9 8 4.6627 4.6939 -0.6150 10 6 4.0404 4.9506 0.5395 11 6 3.9725 6.2798 1.2463 12 6 5.1565 6.4077 2.2070 13 1 6.0866 6.2531 1.6600 14 6 5.0332 5.3555 3.3110 15 6 5.1579 7.7834 2.8222 16 1 4.3914 8.4955 2.5544 17 6 6.1415 8.1350 3.7222 18 7 7.0751 7.2680 4.0480 19 14 6.1478 9.8428 4.4788 20 1 4.9994 10.6223 3.9510 21 1 6.0337 9.7306 5.9552 22 1 7.4157 10.5335 4.1315 23 7 3.5047 3.8236 0.9425 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.0834 0.8676 -1.2481 30 1 3.7157 -0.2720 -1.2482 31 1 3.5945 1.2646 -2.1385 32 1 3.5926 1.2652 2.1399 33 1 3.7147 -0.2717 1.2502 34 1 5.0824 0.8672 1.2504 35 1 3.0405 6.3458 1.8075 36 1 4.0122 7.0843 0.5118 37 1 5.8769 5.4462 3.9952 38 1 4.1032 5.5099 3.8579 39 1 5.0321 4.3605 2.8660 40 1 7.7673 7.5155 4.6809 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233722017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:19 Heat of formation + Delta-G solvation = -12.397634 kcal Electronic energy + Delta-G solvation = -20956.617937 eV Core-core repulsion = 17773.950745 eV Total energy + Delta-G solvation = -3182.667192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.59267 -40.22576 -37.53875 -36.64736 -34.79073 -33.55464 -32.19801 -31.52080 -28.81197 -28.05387 -27.21159 -25.97091 -24.35810 -23.31335 -21.98806 -20.82117 -19.30711 -18.61258 -18.32088 -17.43907 -16.67762 -16.63010 -16.55888 -15.91087 -14.94218 -14.74674 -14.67452 -14.42503 -13.94310 -13.53631 -13.47073 -13.36213 -13.16453 -13.03047 -12.92147 -12.88279 -12.85926 -12.62429 -12.45581 -12.24307 -12.14603 -11.94881 -11.86836 -11.72762 -11.67780 -10.91536 -10.78284 -10.57451 -10.44704 -8.08162 -6.22761 0.09893 1.13197 1.46980 1.49510 1.60454 1.86296 2.26741 2.47709 2.75838 3.20438 3.22029 3.61630 3.79362 4.04755 4.16290 4.30693 4.37487 4.39266 4.44570 4.49018 4.52257 4.58553 4.64908 4.75893 4.83671 4.88164 4.99023 5.00497 5.03899 5.05594 5.17181 5.17894 5.26777 5.34081 5.61860 5.85120 6.04748 6.14141 6.29521 6.88031 7.12313 7.46583 8.97939 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.034745 B = 0.003948 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.676369 B = 7090.245620 C = 7213.707954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.394 6.394 4 C 0.207 3.793 5 C -0.165 4.165 6 C -0.169 4.169 7 C 0.172 3.828 8 N -0.393 5.393 9 O 0.062 5.938 10 C 0.210 3.790 11 C -0.015 4.015 12 C 0.049 3.951 13 H 0.002 0.998 14 C -0.122 4.122 15 C -0.528 4.528 16 H 0.072 0.928 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.960 3.040 20 H -0.260 1.260 21 H -0.285 1.285 22 H -0.284 1.284 23 N -0.491 5.491 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.054 0.946 38 H 0.032 0.968 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.190 -14.290 -8.150 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.314 6.314 4 C 0.166 3.834 5 C -0.223 4.223 6 C -0.227 4.227 7 C -0.101 4.101 8 N -0.105 5.105 9 O 0.006 5.994 10 C -0.010 4.010 11 C -0.054 4.054 12 C 0.029 3.971 13 H 0.020 0.980 14 C -0.180 4.180 15 C -0.566 4.566 16 H 0.090 0.910 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.786 3.214 20 H -0.183 1.183 21 H -0.211 1.211 22 H -0.210 1.210 23 N -0.225 5.225 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.097 -14.819 -8.487 19.349 hybrid contribution 0.609 0.971 0.643 1.315 sum -8.488 -13.848 -7.843 18.037 Atomic orbital electron populations 1.21771 0.92771 1.03650 1.02387 1.22887 0.96262 0.82250 1.01919 1.88002 1.18653 1.29394 1.95371 1.19434 0.82779 0.83120 0.98017 1.22309 1.02155 1.02228 0.95603 1.22354 1.01754 1.02356 0.96189 1.25838 0.96763 0.99779 0.87770 1.74498 1.21450 0.91269 1.23318 1.85255 1.57139 1.21099 1.35871 1.29547 0.88314 0.99233 0.83857 1.20643 1.02804 0.84516 0.97445 1.18620 0.91184 0.95373 0.91900 0.98005 1.21632 1.00606 0.95606 1.00181 1.21468 1.11878 0.98165 1.25045 0.91026 1.25770 0.95086 1.00850 0.97029 1.70050 1.15136 1.36146 1.34637 0.85471 0.78160 0.79931 0.77874 1.18331 1.21084 1.21040 1.71934 1.24454 0.99150 1.26959 0.88263 0.92854 0.92618 0.91085 0.91474 0.90943 0.87837 0.92105 0.92335 0.87663 0.91418 0.87226 0.87031 0.92748 0.94869 0.96668 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16 2 C 0.04 0.76 5.86 71.98 0.42 1.18 16 3 O -0.39 -11.02 9.97 -148.98 -1.49 -12.50 16 4 C 0.21 5.77 1.10 -11.54 -0.01 5.76 16 5 C -0.17 -3.60 7.75 71.98 0.56 -3.04 16 6 C -0.17 -4.09 8.23 71.98 0.59 -3.50 16 7 C 0.17 6.24 6.78 138.46 0.94 7.18 16 8 N -0.39 -14.73 11.47 -60.32 -0.69 -15.42 16 9 O 0.06 2.41 11.31 74.81 0.85 3.25 16 10 C 0.21 8.25 6.98 88.38 0.62 8.87 16 11 C -0.02 -0.59 5.26 29.85 0.16 -0.43 16 12 C 0.05 2.37 2.29 -11.54 -0.03 2.34 16 13 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 14 C -0.12 -6.01 8.78 71.98 0.63 -5.38 16 15 C -0.53 -27.25 8.56 25.60 0.22 -27.03 16 16 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 17 C 0.01 0.60 5.31 84.65 0.45 1.05 16 18 N -0.92 -52.37 11.33 21.45 0.24 -52.13 16 19 Si 0.96 42.02 29.54 68.60 2.03 44.05 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 N -0.49 -19.61 10.86 -303.20 -3.29 -22.90 16 24 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.07 0.99 6.42 -2.38 -0.02 0.97 16 28 H 0.07 1.02 6.41 -2.39 -0.02 1.00 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.10 1.52 6.54 -2.39 -0.02 1.50 16 31 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.75 6.54 -2.39 -0.02 1.73 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 36 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 37 H 0.05 2.97 6.08 -2.38 -0.01 2.96 16 38 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.01 0.68 6.84 -2.39 -0.02 0.67 16 40 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -63.46 327.42 3.95 -59.51 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.02 Total: 10.73 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 5.29 Total: -14.58 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -3.74 Total: -90.45 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.64 Total: -9.25 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -63.46 3.95 -59.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233722017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.115 kcal (2) G-P(sol) polarization free energy of solvation -63.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds