Wall clock time and date at job start Mon Mar 30 2020 07:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.46883 * 2 1 4 4 C 1.42895 * 113.99963 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47503 * 59.99687 * 4 3 2 6 6 C 1.53006 * 109.47000 * 299.99523 * 4 3 2 7 7 C 1.50699 * 109.47158 * 179.97438 * 4 3 2 8 8 N 1.29950 * 126.28758 * 239.68292 * 7 4 3 9 9 O 1.21300 * 110.24938 * 179.84339 * 8 7 4 10 10 C 1.33639 * 109.81392 * 0.42585 * 9 8 7 11 11 C 1.50707 * 126.55383 * 179.71468 * 10 9 8 12 12 H 1.09000 * 109.46966 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.46861 * 300.02946 * 11 10 9 14 14 C 1.53001 * 109.46800 * 60.02775 * 11 10 9 15 15 C 1.50701 * 109.47142 * 175.00141 * 14 11 10 16 16 H 1.08004 * 119.99963 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00185 * 180.02562 * 15 14 11 18 18 N 1.31519 * 119.99591 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99872 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47045 * 90.00156 * 19 17 15 21 21 H 1.48502 * 109.47121 * 209.99495 * 19 17 15 22 22 H 1.48493 * 109.47540 * 330.00118 * 19 17 15 23 23 N 1.31136 * 106.89809 * 359.73853 * 10 9 8 24 24 H 1.09003 * 109.47273 * 300.00203 * 1 2 3 25 25 H 1.09002 * 109.47386 * 60.00172 * 1 2 3 26 26 H 1.09002 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46958 * 239.99766 * 2 1 3 28 28 H 1.09002 * 109.46917 * 119.99576 * 2 1 3 29 29 H 1.09002 * 109.47153 * 60.00043 * 5 4 3 30 30 H 1.09001 * 109.46832 * 300.00234 * 5 4 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 6 4 3 33 33 H 1.09000 * 109.47050 * 300.00235 * 6 4 3 34 34 H 1.09001 * 109.47002 * 59.99969 * 6 4 3 35 35 H 1.09000 * 109.47485 * 60.00129 * 13 11 10 36 36 H 1.09007 * 109.46557 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.47195 * 299.99121 * 13 11 10 38 38 H 1.08998 * 109.47273 * 295.00042 * 14 11 10 39 39 H 1.08999 * 109.47296 * 54.99901 * 14 11 10 40 40 H 0.96996 * 119.99178 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9957 0.7816 -1.2501 6 6 3.9967 0.7813 1.2484 7 6 3.8193 2.9162 -0.0012 8 7 4.5281 3.5227 -0.9058 9 8 4.6628 4.6935 -0.6185 10 6 4.0414 4.9509 0.5363 11 6 3.9747 6.2804 1.2428 12 1 3.3979 6.1750 2.1616 13 6 5.3911 6.7499 1.5807 14 6 3.3002 7.3084 0.3323 15 6 3.1227 8.6036 1.0820 16 1 3.4570 8.6852 2.1058 17 6 2.5324 9.6841 0.4614 18 7 2.1248 9.5846 -0.7850 19 14 2.3117 11.2892 1.3911 20 1 3.5089 12.1450 1.1924 21 1 1.1087 11.9951 0.8813 22 1 2.1420 11.0037 2.8384 23 7 3.5011 3.8253 0.9375 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.5926 1.2652 -2.1399 30 1 3.7147 -0.2715 -1.2500 31 1 5.0824 0.8673 -1.2502 32 1 5.0832 0.8678 1.2482 33 1 3.5942 1.2648 2.1386 34 1 3.7156 -0.2718 1.2485 35 1 5.9679 6.8552 0.6618 36 1 5.3429 7.7117 2.0913 37 1 5.8716 6.0175 2.2294 38 1 3.9226 7.4795 -0.5461 39 1 2.3259 6.9331 0.0196 40 1 1.7092 10.3446 -1.2214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233722195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:29 Heat of formation + Delta-G solvation = 2.080226 kcal Electronic energy + Delta-G solvation = -20815.154318 eV Core-core repulsion = 17633.114933 eV Total energy + Delta-G solvation = -3182.039385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.13560 -39.21932 -35.87032 -35.32789 -33.26635 -32.28200 -30.91626 -30.37901 -27.64465 -27.10644 -24.85509 -24.50756 -23.08908 -22.39658 -20.93478 -19.31345 -17.69322 -17.22172 -16.57457 -16.25625 -15.77749 -15.50241 -14.58981 -14.50706 -13.78205 -13.71914 -13.38683 -12.74200 -12.62037 -12.56362 -12.33289 -12.22705 -12.03172 -11.96725 -11.87871 -11.41141 -11.36721 -11.21013 -10.96272 -10.92814 -10.82773 -10.56533 -10.51364 -10.15691 -9.90034 -9.68076 -9.23801 -9.17737 -8.42568 -6.06406 -4.10396 1.58025 2.51255 3.30122 3.32539 3.37261 3.39657 3.47226 3.92000 4.35009 4.42981 4.60492 4.83613 4.96422 5.04325 5.14776 5.24274 5.29206 5.30014 5.37365 5.52440 5.60851 5.65734 5.75681 5.76364 5.85252 5.88802 5.98717 6.01131 6.09585 6.27499 6.37165 6.57970 6.69699 6.83893 7.06673 7.51399 7.58718 7.88990 8.25131 8.59525 8.93926 9.53934 11.04955 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.004100 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.895367 B = 6827.822950 C = 7288.123769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.213 3.787 5 C -0.173 4.173 6 C -0.171 4.171 7 C 0.173 3.827 8 N -0.385 5.385 9 O 0.080 5.920 10 C 0.218 3.782 11 C -0.001 4.001 12 H 0.106 0.894 13 C -0.135 4.135 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.062 0.938 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 N -0.485 5.485 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.029 0.971 39 H 0.022 0.978 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.114 -18.211 2.383 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.284 6.284 4 C 0.172 3.828 5 C -0.230 4.230 6 C -0.229 4.229 7 C -0.100 4.100 8 N -0.095 5.095 9 O 0.021 5.979 10 C -0.002 4.002 11 C -0.021 4.021 12 H 0.124 0.876 13 C -0.193 4.193 14 C -0.010 4.010 15 C -0.559 4.559 16 H 0.081 0.919 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.217 5.217 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.974 -18.653 1.805 18.975 hybrid contribution -0.127 0.853 0.335 0.925 sum 2.847 -17.800 2.140 18.153 Atomic orbital electron populations 1.21739 0.93489 1.02070 1.03523 1.22566 0.95676 0.83888 1.00275 1.88079 1.18717 1.26568 1.95049 1.19169 0.82364 0.85147 0.96126 1.22342 1.02446 1.00653 0.97593 1.22357 1.01898 1.00746 0.97927 1.25015 0.97917 0.98144 0.88965 1.74544 1.21138 0.91385 1.22385 1.85280 1.56778 1.20291 1.35533 1.29657 0.88245 0.98429 0.83829 1.20358 0.99610 0.83368 0.98806 0.87595 1.21781 0.93914 1.01932 1.01654 1.19247 0.95746 0.91679 0.94290 1.21057 1.40042 0.95831 0.98987 0.91945 1.25003 0.95305 0.99012 0.94899 1.69973 1.40309 1.31220 1.11442 0.86542 0.77684 0.83420 0.80073 1.20573 1.21245 1.19727 1.71904 1.23387 0.98894 1.27545 0.91609 0.91782 0.91099 0.93018 0.92876 0.90967 0.91165 0.90745 0.91264 0.90373 0.91103 0.92315 0.89648 0.94095 0.95270 0.95929 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.05 0.55 5.86 37.16 0.22 0.77 16 3 O -0.37 -5.55 9.97 -35.23 -0.35 -5.91 16 4 C 0.21 3.07 1.10 -91.77 -0.10 2.97 16 5 C -0.17 -2.05 7.75 37.16 0.29 -1.76 16 6 C -0.17 -1.99 8.23 37.16 0.31 -1.68 16 7 C 0.17 3.17 6.78 -156.37 -1.06 2.11 16 8 N -0.38 -7.37 11.47 30.90 0.35 -7.01 16 9 O 0.08 1.60 11.31 18.11 0.20 1.81 16 10 C 0.22 4.37 7.02 -13.05 -0.09 4.28 16 11 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 12 H 0.11 2.09 8.14 -51.93 -0.42 1.66 16 13 C -0.13 -2.32 8.99 37.15 0.33 -1.99 16 14 C 0.03 0.70 4.43 -27.88 -0.12 0.58 16 15 C -0.52 -13.78 8.41 -34.44 -0.29 -14.07 16 16 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 19 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 N -0.48 -9.68 11.55 -9.86 -0.11 -9.80 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.46 6.41 -51.93 -0.33 0.13 16 28 H 0.05 0.48 6.42 -51.93 -0.33 0.14 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.63 6.54 -51.93 -0.34 0.29 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.62 6.54 -51.93 -0.34 0.28 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.49 6.95 -51.92 -0.36 1.13 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -30.70 331.49 -5.97 -36.68 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.29 Total: -2.66 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.49 Total: -8.57 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.98 Total: -42.19 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.15 Total: -4.10 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.70 -5.97 -36.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233722195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.757 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds