Wall clock time and date at job start Mon Mar 30 2020 07:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.46883 * 2 1 4 4 C 1.42895 * 113.99963 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47503 * 59.99687 * 4 3 2 6 6 C 1.53006 * 109.47000 * 299.99523 * 4 3 2 7 7 C 1.50699 * 109.47158 * 179.97438 * 4 3 2 8 8 N 1.29950 * 126.28758 * 239.68292 * 7 4 3 9 9 O 1.21300 * 110.24938 * 179.84339 * 8 7 4 10 10 C 1.33639 * 109.81392 * 0.42585 * 9 8 7 11 11 C 1.50707 * 126.55383 * 179.71468 * 10 9 8 12 12 H 1.09000 * 109.46966 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.46861 * 300.02946 * 11 10 9 14 14 C 1.53001 * 109.46800 * 60.02775 * 11 10 9 15 15 C 1.50701 * 109.47142 * 175.00141 * 14 11 10 16 16 H 1.08004 * 119.99963 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00185 * 180.02562 * 15 14 11 18 18 N 1.31519 * 119.99591 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99872 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47045 * 90.00156 * 19 17 15 21 21 H 1.48502 * 109.47121 * 209.99495 * 19 17 15 22 22 H 1.48493 * 109.47540 * 330.00118 * 19 17 15 23 23 N 1.31136 * 106.89809 * 359.73853 * 10 9 8 24 24 H 1.09003 * 109.47273 * 300.00203 * 1 2 3 25 25 H 1.09002 * 109.47386 * 60.00172 * 1 2 3 26 26 H 1.09002 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46958 * 239.99766 * 2 1 3 28 28 H 1.09002 * 109.46917 * 119.99576 * 2 1 3 29 29 H 1.09002 * 109.47153 * 60.00043 * 5 4 3 30 30 H 1.09001 * 109.46832 * 300.00234 * 5 4 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 6 4 3 33 33 H 1.09000 * 109.47050 * 300.00235 * 6 4 3 34 34 H 1.09001 * 109.47002 * 59.99969 * 6 4 3 35 35 H 1.09000 * 109.47485 * 60.00129 * 13 11 10 36 36 H 1.09007 * 109.46557 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.47195 * 299.99121 * 13 11 10 38 38 H 1.08998 * 109.47273 * 295.00042 * 14 11 10 39 39 H 1.08999 * 109.47296 * 54.99901 * 14 11 10 40 40 H 0.96996 * 119.99178 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9957 0.7816 -1.2501 6 6 3.9967 0.7813 1.2484 7 6 3.8193 2.9162 -0.0012 8 7 4.5281 3.5227 -0.9058 9 8 4.6628 4.6935 -0.6185 10 6 4.0414 4.9509 0.5363 11 6 3.9747 6.2804 1.2428 12 1 3.3979 6.1750 2.1616 13 6 5.3911 6.7499 1.5807 14 6 3.3002 7.3084 0.3323 15 6 3.1227 8.6036 1.0820 16 1 3.4570 8.6852 2.1058 17 6 2.5324 9.6841 0.4614 18 7 2.1248 9.5846 -0.7850 19 14 2.3117 11.2892 1.3911 20 1 3.5089 12.1450 1.1924 21 1 1.1087 11.9951 0.8813 22 1 2.1420 11.0037 2.8384 23 7 3.5011 3.8253 0.9375 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.5926 1.2652 -2.1399 30 1 3.7147 -0.2715 -1.2500 31 1 5.0824 0.8673 -1.2502 32 1 5.0832 0.8678 1.2482 33 1 3.5942 1.2648 2.1386 34 1 3.7156 -0.2718 1.2485 35 1 5.9679 6.8552 0.6618 36 1 5.3429 7.7117 2.0913 37 1 5.8716 6.0175 2.2294 38 1 3.9226 7.4795 -0.5461 39 1 2.3259 6.9331 0.0196 40 1 1.7092 10.3446 -1.2214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233722195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:28 Heat of formation + Delta-G solvation = -18.297556 kcal Electronic energy + Delta-G solvation = -20816.037965 eV Core-core repulsion = 17633.114933 eV Total energy + Delta-G solvation = -3182.923032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.64815 -40.24585 -37.55413 -36.75921 -34.77804 -33.91311 -32.15185 -31.51055 -29.02917 -28.53850 -26.25766 -26.00377 -24.58411 -23.74411 -22.24037 -20.67056 -19.18737 -18.72564 -18.46126 -17.48476 -16.69892 -16.64710 -16.49213 -16.15047 -15.12486 -14.72648 -14.62903 -14.42698 -13.85017 -13.67379 -13.51955 -13.38150 -13.19027 -13.01620 -12.96619 -12.89349 -12.78106 -12.70939 -12.63870 -12.28048 -12.25815 -12.10176 -11.91675 -11.83513 -11.56396 -11.25739 -10.87713 -10.58944 -10.54585 -8.17603 -6.28678 0.04362 1.05475 1.47054 1.48035 1.58890 1.80488 2.26461 2.44573 2.68001 3.16648 3.17974 3.60632 3.73089 4.00054 4.14289 4.18299 4.27735 4.28678 4.37062 4.37950 4.50067 4.51746 4.64435 4.67876 4.77430 4.84374 4.92269 4.98590 5.02313 5.04633 5.08855 5.18197 5.25008 5.36619 5.40599 5.57752 5.79848 6.14501 6.16092 6.85409 7.05812 7.40795 8.95152 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.004100 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.895367 B = 6827.822950 C = 7288.123769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.401 6.401 4 C 0.204 3.796 5 C -0.167 4.167 6 C -0.165 4.165 7 C 0.174 3.826 8 N -0.393 5.393 9 O 0.063 5.937 10 C 0.211 3.789 11 C 0.009 3.991 12 H 0.112 0.888 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.529 4.529 16 H 0.080 0.920 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.271 1.271 21 H -0.290 1.290 22 H -0.258 1.258 23 N -0.497 5.497 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.005 0.995 39 H -0.016 1.016 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -19.644 3.909 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.321 6.321 4 C 0.163 3.837 5 C -0.224 4.224 6 C -0.222 4.222 7 C -0.100 4.100 8 N -0.105 5.105 9 O 0.008 5.992 10 C -0.008 4.008 11 C -0.011 4.011 12 H 0.130 0.870 13 C -0.185 4.185 14 C -0.002 4.002 15 C -0.566 4.566 16 H 0.098 0.902 17 C -0.197 4.197 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.196 1.196 21 H -0.216 1.216 22 H -0.182 1.182 23 N -0.231 5.231 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.024 0.976 39 H 0.002 0.998 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.643 -20.082 3.345 20.682 hybrid contribution -0.386 1.194 -0.177 1.267 sum 3.257 -18.889 3.167 19.427 Atomic orbital electron populations 1.21790 0.93136 1.03670 1.02217 1.22883 0.96037 0.82134 1.02102 1.88032 1.19037 1.29588 1.95417 1.19548 0.82680 0.82872 0.98576 1.22326 1.02415 1.02215 0.95457 1.22336 1.02069 1.02220 0.95624 1.25924 0.96542 0.99794 0.87741 1.74533 1.22149 0.91063 1.22786 1.85261 1.57244 1.21009 1.35668 1.29616 0.88598 0.98621 0.83980 1.20164 1.01137 0.82225 0.97606 0.87038 1.21735 0.91960 1.02671 1.02166 1.19038 0.93768 0.92940 0.94440 1.21505 1.39214 0.96189 0.99736 0.90209 1.25979 0.95052 1.03033 0.95680 1.70129 1.41674 1.32387 1.13430 0.85402 0.77541 0.78660 0.79194 1.19610 1.21610 1.18163 1.71915 1.23423 0.99272 1.28464 0.92874 0.93136 0.88020 0.91146 0.90856 0.92873 0.87687 0.90365 0.90579 0.91974 0.87702 0.92510 0.89591 0.91140 0.97631 0.99785 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.04 0.81 5.86 71.98 0.42 1.24 16 3 O -0.40 -11.80 9.97 -148.98 -1.49 -13.28 16 4 C 0.20 5.60 1.10 -11.54 -0.01 5.59 16 5 C -0.17 -3.62 7.75 71.98 0.56 -3.07 16 6 C -0.16 -3.43 8.23 71.98 0.59 -2.83 16 7 C 0.17 6.35 6.78 138.46 0.94 7.29 16 8 N -0.39 -15.22 11.47 -60.32 -0.69 -15.91 16 9 O 0.06 2.59 11.31 74.87 0.85 3.44 16 10 C 0.21 8.62 7.02 88.38 0.62 9.25 16 11 C 0.01 0.37 2.81 -11.54 -0.03 0.33 16 12 H 0.11 4.36 8.14 -2.39 -0.02 4.35 16 13 C -0.13 -4.26 8.99 71.98 0.65 -3.61 16 14 C 0.04 1.86 4.43 29.85 0.13 1.99 16 15 C -0.53 -28.13 8.41 25.60 0.22 -27.91 16 16 H 0.08 3.89 7.06 -2.91 -0.02 3.86 16 17 C 0.00 0.02 5.46 84.65 0.46 0.49 16 18 N -0.94 -56.40 13.29 21.45 0.28 -56.12 16 19 Si 0.97 42.72 29.54 68.60 2.03 44.74 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 N -0.50 -20.01 11.55 -303.18 -3.50 -23.51 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.03 6.41 -2.39 -0.02 1.02 16 28 H 0.07 1.06 6.42 -2.39 -0.02 1.04 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.51 6.54 -2.39 -0.02 1.49 16 31 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 1.43 6.54 -2.39 -0.02 1.42 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 2.86 6.95 -2.38 -0.02 2.84 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 39 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -68.20 331.49 3.78 -64.42 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 1.02 Total: 9.35 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 5.28 Total: -13.13 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.91 Total: -95.54 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.64 Total: -9.84 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -68.20 3.78 -64.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233722195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.126 kcal (2) G-P(sol) polarization free energy of solvation -68.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds