Wall clock time and date at job start Mon Mar 30 2020 07:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47514 * 2 1 4 4 C 1.42895 * 113.99995 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47503 * 300.00051 * 4 3 2 6 6 C 1.52999 * 109.47162 * 60.00548 * 4 3 2 7 7 C 1.50706 * 109.46938 * 179.97438 * 4 3 2 8 8 N 1.29940 * 126.28450 * 124.68804 * 7 4 3 9 9 O 1.21302 * 110.25237 * 179.84419 * 8 7 4 10 10 C 1.33650 * 109.80656 * 0.42895 * 9 8 7 11 11 C 1.50699 * 126.54771 * 179.76027 * 10 9 8 12 12 H 1.08999 * 109.46783 * 179.97438 * 11 10 9 13 13 C 1.52989 * 109.47552 * 59.97220 * 11 10 9 14 14 C 1.53006 * 109.46813 * 299.96947 * 11 10 9 15 15 C 1.50705 * 109.46933 * 185.00182 * 14 11 10 16 16 H 1.08003 * 119.99782 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00032 * 180.02562 * 15 14 11 18 18 N 1.31510 * 119.99745 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99673 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47311 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46956 * 120.00594 * 19 17 15 22 22 H 1.48502 * 109.46831 * 239.99850 * 19 17 15 23 23 N 1.31123 * 106.89784 * 359.73502 * 10 9 8 24 24 H 1.09003 * 109.46575 * 60.00179 * 1 2 3 25 25 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47033 * 300.00448 * 1 2 3 27 27 H 1.09001 * 109.47351 * 240.00198 * 2 1 3 28 28 H 1.09006 * 109.47255 * 120.00086 * 2 1 3 29 29 H 1.09002 * 109.47153 * 60.00043 * 5 4 3 30 30 H 1.09001 * 109.46832 * 300.00234 * 5 4 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46716 * 299.99480 * 6 4 3 33 33 H 1.09000 * 109.47486 * 59.99398 * 6 4 3 34 34 H 1.09001 * 109.47362 * 180.02562 * 6 4 3 35 35 H 1.08998 * 109.47700 * 59.99662 * 13 11 10 36 36 H 1.08995 * 109.47530 * 180.02562 * 13 11 10 37 37 H 1.09007 * 109.47387 * 300.00149 * 13 11 10 38 38 H 1.08997 * 109.47447 * 304.99856 * 14 11 10 39 39 H 1.08995 * 109.47008 * 65.00717 * 14 11 10 40 40 H 0.97001 * 119.99935 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.9958 0.7815 1.2501 6 6 3.9967 0.7812 -1.2484 7 6 3.8195 2.9161 -0.0001 8 7 4.5934 3.5059 0.8612 9 8 4.7124 4.6806 0.5833 10 6 3.9967 4.9622 -0.5097 11 6 3.8719 6.3067 -1.1789 12 1 3.2203 6.2206 -2.0484 13 6 5.2552 6.7854 -1.6237 14 6 3.2763 7.3138 -0.1929 15 6 3.0373 8.6247 -0.8968 16 1 3.2850 8.7290 -1.9428 17 6 2.5024 9.6910 -0.2053 18 7 2.2013 9.5641 1.0685 19 14 2.2055 11.3156 -1.0781 20 1 2.6260 11.1992 -2.4975 21 1 0.7611 11.6544 -1.0153 22 1 2.9940 12.3851 -0.4148 23 7 3.4244 3.8451 -0.8888 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7147 -0.2717 1.2502 30 1 3.5926 1.2652 2.1398 31 1 5.0824 0.8679 1.2507 32 1 3.7156 -0.2719 -1.2483 33 1 3.5943 1.2646 -2.1386 34 1 5.0834 0.8668 -1.2477 35 1 5.6796 6.0681 -2.3261 36 1 5.1650 7.7581 -2.1073 37 1 5.9070 6.8715 -0.7542 38 1 2.3313 6.9304 0.1917 39 1 3.9700 7.4665 0.6338 40 1 1.8254 10.3143 1.5551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233722451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:32 Heat of formation + Delta-G solvation = 2.093726 kcal Electronic energy + Delta-G solvation = -20817.016027 eV Core-core repulsion = 17634.977227 eV Total energy + Delta-G solvation = -3182.038800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.13303 -39.21739 -35.86755 -35.32268 -33.27609 -32.28326 -30.92352 -30.35979 -27.64652 -27.10747 -24.86029 -24.50596 -23.09726 -22.39243 -20.93493 -19.29730 -17.69039 -17.23776 -16.57780 -16.23433 -15.77657 -15.50292 -14.58527 -14.50573 -13.80331 -13.72686 -13.38520 -12.73983 -12.62018 -12.56708 -12.32230 -12.23454 -12.03204 -11.96929 -11.88242 -11.41187 -11.37032 -11.19164 -10.98349 -10.91098 -10.82735 -10.56070 -10.50622 -10.16033 -9.90769 -9.67505 -9.22638 -9.17092 -8.43102 -6.06606 -4.10499 1.58375 2.52554 3.29381 3.31985 3.37441 3.40310 3.46342 3.90500 4.36675 4.43463 4.60451 4.83519 4.96131 5.04334 5.14807 5.24408 5.28863 5.29943 5.36679 5.52169 5.60877 5.65559 5.75812 5.76448 5.85441 5.88219 5.99038 6.01349 6.08599 6.27673 6.37362 6.58221 6.69853 6.84168 7.07119 7.51494 7.58759 7.88990 8.25078 8.59781 8.94082 9.53912 11.04797 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.004102 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.132138 B = 6824.730101 C = 7275.940286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.213 3.787 5 C -0.173 4.173 6 C -0.172 4.172 7 C 0.173 3.827 8 N -0.385 5.385 9 O 0.079 5.921 10 C 0.217 3.783 11 C -0.001 4.001 12 H 0.106 0.894 13 C -0.135 4.135 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.063 0.937 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.484 5.484 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.022 0.978 39 H 0.029 0.971 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.913 -18.175 -3.054 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.283 6.283 4 C 0.172 3.828 5 C -0.230 4.230 6 C -0.230 4.230 7 C -0.100 4.100 8 N -0.095 5.095 9 O 0.021 5.979 10 C -0.002 4.002 11 C -0.021 4.021 12 H 0.124 0.876 13 C -0.193 4.193 14 C -0.010 4.010 15 C -0.558 4.558 16 H 0.081 0.919 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.216 5.216 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.815 -18.625 -2.486 19.000 hybrid contribution -0.162 0.858 -0.281 0.917 sum 2.653 -17.767 -2.768 18.176 Atomic orbital electron populations 1.21734 0.93485 1.02060 1.03531 1.22568 0.95686 0.83910 1.00260 1.88086 1.18666 1.26516 1.95043 1.19167 0.82392 0.85148 0.96099 1.22343 1.02510 1.00648 0.97540 1.22363 1.01910 1.00798 0.97889 1.25025 0.96872 0.98040 0.90109 1.74538 1.21650 0.91445 1.21885 1.85283 1.54139 1.19838 1.38647 1.29660 0.87047 0.98660 0.84819 1.20354 0.99671 0.82868 0.99247 0.87597 1.21779 0.94429 1.01999 1.01074 1.19254 0.96333 0.91949 0.93461 1.21097 1.42431 0.95579 0.96732 0.91885 1.25004 0.95360 0.99040 0.94835 1.69978 1.43117 1.31631 1.08221 0.86490 0.77903 0.83544 0.79807 1.19566 1.21011 1.20983 1.71908 1.24126 0.98522 1.27080 0.91607 0.91110 0.91777 0.92896 0.93028 0.91152 0.91028 0.90669 0.91062 0.90455 0.91238 0.94096 0.89644 0.92321 0.95935 0.95259 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.04 16 2 C 0.05 0.55 5.86 37.16 0.22 0.77 16 3 O -0.36 -5.53 9.97 -35.23 -0.35 -5.88 16 4 C 0.21 3.06 1.10 -91.77 -0.10 2.96 16 5 C -0.17 -2.05 7.76 37.16 0.29 -1.76 16 6 C -0.17 -1.98 8.23 37.16 0.31 -1.67 16 7 C 0.17 3.17 6.77 -156.37 -1.06 2.11 16 8 N -0.39 -7.37 11.48 30.90 0.35 -7.01 16 9 O 0.08 1.59 11.31 18.08 0.20 1.80 16 10 C 0.22 4.37 7.02 -13.06 -0.09 4.27 16 11 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 12 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 13 C -0.13 -2.33 8.99 37.15 0.33 -1.99 16 14 C 0.03 0.69 4.43 -27.88 -0.12 0.57 16 15 C -0.52 -13.76 8.41 -34.44 -0.29 -14.05 16 16 H 0.06 1.58 7.06 -52.48 -0.37 1.21 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 19 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 N -0.48 -9.69 11.55 -9.87 -0.11 -9.80 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.47 6.42 -51.93 -0.33 0.14 16 28 H 0.05 0.46 6.42 -51.93 -0.33 0.13 16 29 H 0.07 0.63 6.54 -51.93 -0.34 0.29 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.62 6.54 -51.93 -0.34 0.28 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 37 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -30.74 331.50 -5.97 -36.71 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.29 Total: -2.71 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.49 Total: -8.57 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.98 Total: -42.19 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.15 Total: -4.09 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.74 -5.97 -36.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233722451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.804 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds