Wall clock time and date at job start Mon Mar 30 2020 07:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47514 * 2 1 4 4 C 1.42895 * 113.99995 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47503 * 300.00051 * 4 3 2 6 6 C 1.52999 * 109.47162 * 60.00548 * 4 3 2 7 7 C 1.50706 * 109.46938 * 179.97438 * 4 3 2 8 8 N 1.29940 * 126.28450 * 124.68804 * 7 4 3 9 9 O 1.21302 * 110.25237 * 179.84419 * 8 7 4 10 10 C 1.33650 * 109.80656 * 0.42895 * 9 8 7 11 11 C 1.50699 * 126.54771 * 179.76027 * 10 9 8 12 12 H 1.08999 * 109.46783 * 179.97438 * 11 10 9 13 13 C 1.52989 * 109.47552 * 59.97220 * 11 10 9 14 14 C 1.53006 * 109.46813 * 299.96947 * 11 10 9 15 15 C 1.50705 * 109.46933 * 185.00182 * 14 11 10 16 16 H 1.08003 * 119.99782 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00032 * 180.02562 * 15 14 11 18 18 N 1.31510 * 119.99745 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99673 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47311 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46956 * 120.00594 * 19 17 15 22 22 H 1.48502 * 109.46831 * 239.99850 * 19 17 15 23 23 N 1.31123 * 106.89784 * 359.73502 * 10 9 8 24 24 H 1.09003 * 109.46575 * 60.00179 * 1 2 3 25 25 H 1.09000 * 109.47290 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47033 * 300.00448 * 1 2 3 27 27 H 1.09001 * 109.47351 * 240.00198 * 2 1 3 28 28 H 1.09006 * 109.47255 * 120.00086 * 2 1 3 29 29 H 1.09002 * 109.47153 * 60.00043 * 5 4 3 30 30 H 1.09001 * 109.46832 * 300.00234 * 5 4 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46716 * 299.99480 * 6 4 3 33 33 H 1.09000 * 109.47486 * 59.99398 * 6 4 3 34 34 H 1.09001 * 109.47362 * 180.02562 * 6 4 3 35 35 H 1.08998 * 109.47700 * 59.99662 * 13 11 10 36 36 H 1.08995 * 109.47530 * 180.02562 * 13 11 10 37 37 H 1.09007 * 109.47387 * 300.00149 * 13 11 10 38 38 H 1.08997 * 109.47447 * 304.99856 * 14 11 10 39 39 H 1.08995 * 109.47008 * 65.00717 * 14 11 10 40 40 H 0.97001 * 119.99935 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.9958 0.7815 1.2501 6 6 3.9967 0.7812 -1.2484 7 6 3.8195 2.9161 -0.0001 8 7 4.5934 3.5059 0.8612 9 8 4.7124 4.6806 0.5833 10 6 3.9967 4.9622 -0.5097 11 6 3.8719 6.3067 -1.1789 12 1 3.2203 6.2206 -2.0484 13 6 5.2552 6.7854 -1.6237 14 6 3.2763 7.3138 -0.1929 15 6 3.0373 8.6247 -0.8968 16 1 3.2850 8.7290 -1.9428 17 6 2.5024 9.6910 -0.2053 18 7 2.2013 9.5641 1.0685 19 14 2.2055 11.3156 -1.0781 20 1 2.6260 11.1992 -2.4975 21 1 0.7611 11.6544 -1.0153 22 1 2.9940 12.3851 -0.4148 23 7 3.4244 3.8451 -0.8888 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7147 -0.2717 1.2502 30 1 3.5926 1.2652 2.1398 31 1 5.0824 0.8679 1.2507 32 1 3.7156 -0.2719 -1.2483 33 1 3.5943 1.2646 -2.1386 34 1 5.0834 0.8668 -1.2477 35 1 5.6796 6.0681 -2.3261 36 1 5.1650 7.7581 -2.1073 37 1 5.9070 6.8715 -0.7542 38 1 2.3313 6.9304 0.1917 39 1 3.9700 7.4665 0.6338 40 1 1.8254 10.3143 1.5551 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233722451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:32 Heat of formation + Delta-G solvation = -18.314881 kcal Electronic energy + Delta-G solvation = -20817.901011 eV Core-core repulsion = 17634.977227 eV Total energy + Delta-G solvation = -3182.923783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.64512 -40.24254 -37.55349 -36.75285 -34.78466 -33.91933 -32.14960 -31.49846 -29.02719 -28.54070 -26.26734 -25.99785 -24.59712 -23.73633 -22.24139 -20.65423 -19.18462 -18.73145 -18.47233 -17.46461 -16.69657 -16.64832 -16.49004 -16.14835 -15.12403 -14.74739 -14.63333 -14.42916 -13.85377 -13.67306 -13.51593 -13.38573 -13.19171 -13.01669 -12.96396 -12.89420 -12.79761 -12.70431 -12.63640 -12.26978 -12.23604 -12.10783 -11.91186 -11.84099 -11.56780 -11.23645 -10.87993 -10.58048 -10.55886 -8.17827 -6.28787 0.04617 1.06626 1.46344 1.47228 1.60025 1.80667 2.25688 2.44231 2.66102 3.17666 3.19071 3.60653 3.73206 3.99458 4.14480 4.18129 4.27798 4.28945 4.37140 4.37937 4.49873 4.51697 4.64103 4.67876 4.77342 4.84837 4.92090 4.98699 5.02110 5.04620 5.08864 5.17410 5.25372 5.36687 5.40618 5.57770 5.79914 6.14988 6.16053 6.85533 7.06100 7.40717 8.95144 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.004102 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.132138 B = 6824.730101 C = 7275.940286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.400 6.400 4 C 0.204 3.796 5 C -0.167 4.167 6 C -0.165 4.165 7 C 0.174 3.826 8 N -0.393 5.393 9 O 0.063 5.937 10 C 0.211 3.789 11 C 0.009 3.991 12 H 0.111 0.889 13 C -0.127 4.127 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.080 0.920 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.253 1.253 21 H -0.285 1.285 22 H -0.281 1.281 23 N -0.497 5.497 24 H 0.052 0.948 25 H 0.101 0.899 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.056 0.944 38 H -0.016 1.016 39 H 0.006 0.994 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -19.585 -4.631 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.320 6.320 4 C 0.163 3.837 5 C -0.224 4.224 6 C -0.223 4.223 7 C -0.100 4.100 8 N -0.106 5.106 9 O 0.008 5.992 10 C -0.008 4.008 11 C -0.011 4.011 12 H 0.129 0.871 13 C -0.185 4.185 14 C -0.002 4.002 15 C -0.565 4.565 16 H 0.098 0.902 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.176 1.176 21 H -0.211 1.211 22 H -0.207 1.207 23 N -0.231 5.231 24 H 0.072 0.928 25 H 0.120 0.880 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.002 0.998 39 H 0.024 0.976 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.364 -20.030 -4.078 20.716 hybrid contribution -0.383 1.190 0.247 1.274 sum 2.981 -18.840 -3.830 19.456 Atomic orbital electron populations 1.21786 0.93135 1.03655 1.02223 1.22884 0.96044 0.82160 1.02085 1.88039 1.18982 1.29530 1.95409 1.19545 0.82714 0.82869 0.98545 1.22329 1.02455 1.02222 0.95419 1.22343 1.02081 1.02269 0.95586 1.25931 0.95567 0.99689 0.88799 1.74526 1.22641 0.91101 1.22298 1.85264 1.54561 1.20555 1.38812 1.29615 0.87394 0.98834 0.84988 1.20160 1.01307 0.81816 0.97852 0.87059 1.21732 0.92506 1.02667 1.01620 1.19045 0.94172 0.93119 0.93878 1.21536 1.41521 0.95953 0.97515 0.90199 1.25976 0.95186 1.03146 0.95455 1.70130 1.44507 1.32876 1.10123 0.85357 0.77474 0.78590 0.79388 1.17634 1.21141 1.20681 1.71918 1.24205 0.98942 1.27994 0.92848 0.88036 0.93157 0.90850 0.91183 0.87663 0.92961 0.90323 0.87664 0.91989 0.90557 0.91152 0.89611 0.92491 0.99787 0.97603 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.04 0.81 5.86 71.98 0.42 1.23 16 3 O -0.40 -11.74 9.97 -148.98 -1.49 -13.23 16 4 C 0.20 5.60 1.10 -11.54 -0.01 5.59 16 5 C -0.17 -3.64 7.76 71.98 0.56 -3.08 16 6 C -0.16 -3.41 8.23 71.98 0.59 -2.82 16 7 C 0.17 6.35 6.77 138.47 0.94 7.29 16 8 N -0.39 -15.20 11.48 -60.32 -0.69 -15.90 16 9 O 0.06 2.58 11.31 74.77 0.85 3.43 16 10 C 0.21 8.63 7.02 88.38 0.62 9.25 16 11 C 0.01 0.36 2.81 -11.54 -0.03 0.33 16 12 H 0.11 4.37 8.14 -2.39 -0.02 4.35 16 13 C -0.13 -4.26 8.99 71.98 0.65 -3.61 16 14 C 0.04 1.85 4.43 29.85 0.13 1.98 16 15 C -0.53 -28.06 8.41 25.60 0.22 -27.85 16 16 H 0.08 3.90 7.06 -2.91 -0.02 3.88 16 17 C 0.00 0.01 5.46 84.66 0.46 0.47 16 18 N -0.94 -56.39 13.29 21.45 0.28 -56.10 16 19 Si 0.97 42.75 29.54 68.60 2.03 44.77 16 20 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 21 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 N -0.50 -20.06 11.55 -303.20 -3.50 -23.56 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 1.05 6.42 -2.39 -0.02 1.04 16 28 H 0.07 1.03 6.42 -2.38 -0.02 1.01 16 29 H 0.10 1.52 6.54 -2.39 -0.02 1.50 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.10 1.43 6.54 -2.39 -0.02 1.41 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.86 6.95 -2.39 -0.02 2.85 16 37 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 38 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -68.25 331.50 3.78 -64.47 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.02 Total: 9.22 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.28 Total: -13.10 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -3.91 Total: -95.56 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.64 Total: -9.80 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -68.25 3.78 -64.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233722451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.156 kcal (2) G-P(sol) polarization free energy of solvation -68.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds