Wall clock time and date at job start Mon Mar 30 2020 07:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47237 * 299.99826 * 4 3 2 6 6 C 1.53000 * 109.47634 * 60.00037 * 4 3 2 7 7 C 1.53005 * 109.46612 * 64.99470 * 6 4 3 8 8 C 1.50700 * 109.47140 * 180.02562 * 4 3 2 9 9 N 1.29950 * 126.28677 * 240.02842 * 8 4 3 10 10 O 1.21299 * 110.25038 * 179.97438 * 9 8 4 11 11 C 1.33639 * 109.81583 * 359.97438 * 10 9 8 12 12 C 1.50694 * 126.55852 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47138 * 269.97990 * 12 11 10 14 14 C 1.50699 * 109.47045 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00198 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00304 * 179.97438 * 14 13 12 17 17 N 1.31524 * 119.99608 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00559 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47053 * 60.00246 * 18 16 14 20 20 H 1.48497 * 109.47517 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46970 * 300.00418 * 18 16 14 22 22 N 1.31140 * 106.89427 * 359.77034 * 11 10 9 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 28 28 H 1.09003 * 109.46983 * 60.00205 * 5 4 3 29 29 H 1.09003 * 109.46954 * 180.02562 * 5 4 3 30 30 H 1.08995 * 109.47205 * 300.00454 * 5 4 3 31 31 H 1.08992 * 109.47705 * 184.99611 * 6 4 3 32 32 H 1.09003 * 109.47122 * 305.00584 * 6 4 3 33 33 H 1.08996 * 109.47690 * 300.00431 * 7 6 4 34 34 H 1.09001 * 109.47054 * 60.01184 * 7 6 4 35 35 H 1.09004 * 109.46640 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47008 * 29.97333 * 12 11 10 37 37 H 1.08999 * 109.47510 * 149.97346 * 12 11 10 38 38 H 1.09000 * 109.47098 * 299.99632 * 13 12 11 39 39 H 1.09000 * 109.47015 * 59.99630 * 13 12 11 40 40 H 0.97001 * 119.99399 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9967 0.7813 1.2484 6 6 3.9957 0.7817 -1.2501 7 6 3.5292 1.5376 -2.4959 8 6 3.8194 2.9162 0.0001 9 7 4.5228 3.5249 -0.9073 10 8 4.6614 4.6944 -0.6166 11 6 4.0402 4.9508 0.5385 12 6 3.9722 6.2799 1.2454 13 6 5.1564 6.4080 2.2057 14 6 5.0888 7.7374 2.9121 15 1 4.2822 8.4226 2.6973 16 6 6.0567 8.0790 3.8327 17 7 7.0393 7.2447 4.0940 18 14 5.9725 9.7266 4.7089 19 1 4.7027 9.8162 5.4736 20 1 7.1219 9.8510 5.6409 21 1 6.0263 10.8226 3.7084 22 7 3.4963 3.8258 0.9366 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.7157 -0.2719 1.2483 29 1 5.0833 0.8678 1.2481 30 1 3.5943 1.2646 2.1386 31 1 5.0848 0.7895 -1.2070 32 1 3.6413 -0.2481 -1.2961 33 1 2.4401 1.5298 -2.5391 34 1 3.8837 2.5674 -2.4500 35 1 3.9313 1.0540 -3.3861 36 1 4.0115 7.0844 0.5110 37 1 3.0403 6.3457 1.8069 38 1 5.1173 5.6035 2.9401 39 1 6.0883 6.3422 1.6442 40 1 7.7205 7.4852 4.7414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233751456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:45 Heat of formation + Delta-G solvation = 7.725691 kcal Electronic energy + Delta-G solvation = -20859.986984 eV Core-core repulsion = 17678.192404 eV Total energy + Delta-G solvation = -3181.794580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.14536 -39.44337 -35.58288 -34.83812 -33.58209 -32.12348 -31.28601 -30.04847 -29.90599 -25.80940 -25.03748 -23.57224 -23.15191 -22.29983 -21.09582 -19.67619 -17.88994 -17.45121 -16.47271 -16.07189 -15.97328 -15.49052 -14.57572 -14.34452 -13.90219 -13.86156 -13.36488 -13.16471 -12.72351 -12.57582 -12.42251 -12.37772 -12.03354 -11.93900 -11.68362 -11.56740 -11.33417 -11.18840 -10.98838 -10.96093 -10.77750 -10.68878 -10.48387 -10.10996 -9.96132 -9.59239 -9.32536 -9.14621 -8.43809 -6.08545 -4.13181 1.55998 2.53944 3.30648 3.31479 3.35752 3.37532 3.45248 3.95580 4.33731 4.41052 4.58848 4.82341 4.95471 5.02998 5.10250 5.17840 5.26459 5.28038 5.39177 5.46942 5.49889 5.63004 5.72834 5.74852 5.83820 5.93588 5.98627 6.04471 6.09247 6.17735 6.26606 6.34565 6.53987 6.64772 7.06883 7.49978 7.57588 7.87027 8.22705 8.59758 8.91846 9.51624 11.02689 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.003811 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.042412 B = 7345.284078 C = 7595.510974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.364 6.364 4 C 0.216 3.784 5 C -0.174 4.174 6 C -0.143 4.143 7 C -0.162 4.162 8 C 0.179 3.821 9 N -0.381 5.381 10 O 0.067 5.933 11 C 0.213 3.787 12 C -0.028 4.028 13 C 0.028 3.972 14 C -0.526 4.526 15 H 0.061 0.939 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 N -0.479 5.479 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 -14.345 -9.540 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.175 3.825 5 C -0.232 4.232 6 C -0.181 4.181 7 C -0.220 4.220 8 C -0.094 4.094 9 N -0.093 5.093 10 O 0.011 5.989 11 C -0.006 4.006 12 C -0.067 4.067 13 C -0.010 4.010 14 C -0.564 4.564 15 H 0.079 0.921 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 N -0.212 5.212 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.477 -14.879 -9.862 19.761 hybrid contribution 0.273 0.729 0.602 0.984 sum -8.204 -14.150 -9.260 18.796 Atomic orbital electron populations 1.21726 0.93574 1.02072 1.03314 1.22568 0.95534 0.84030 1.00373 1.88031 1.18782 1.26467 1.95004 1.19273 0.82254 0.85212 0.95810 1.22376 1.02215 1.00682 0.97936 1.22068 1.01847 0.99603 0.94551 1.22011 1.01240 1.02621 0.96099 1.24974 0.97646 0.98078 0.88662 1.74485 1.21159 0.91397 1.22259 1.85286 1.56989 1.20933 1.35717 1.29650 0.87931 0.99241 0.83825 1.20755 1.04571 0.83603 0.97811 1.19151 0.90640 0.98230 0.92968 1.21039 1.10481 1.01671 1.23239 0.92071 1.25009 0.95221 0.97304 0.96683 1.69963 1.13029 1.35909 1.34116 0.86566 0.77607 0.83809 0.79496 1.20081 1.21274 1.20077 1.71912 1.23800 0.98805 1.26715 0.91125 0.91641 0.91958 0.92809 0.93013 0.91152 0.91066 0.90183 0.90395 0.90722 0.92770 0.89881 0.92845 0.89095 0.88195 0.95527 0.95802 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.52 5.86 37.16 0.22 0.74 16 3 O -0.36 -5.25 9.51 -35.23 -0.33 -5.59 16 4 C 0.22 3.11 0.79 -91.77 -0.07 3.03 16 5 C -0.17 -2.23 8.23 37.16 0.31 -1.93 16 6 C -0.14 -1.72 4.58 -26.73 -0.12 -1.84 16 7 C -0.16 -2.05 9.44 37.16 0.35 -1.70 16 8 C 0.18 3.23 6.39 -156.37 -1.00 2.23 16 9 N -0.38 -6.93 8.87 30.90 0.27 -6.66 16 10 O 0.07 1.27 11.31 18.11 0.20 1.48 16 11 C 0.21 4.15 7.77 -13.05 -0.10 4.05 16 12 C -0.03 -0.55 5.78 -27.89 -0.16 -0.71 16 13 C 0.03 0.70 4.96 -27.88 -0.14 0.56 16 14 C -0.53 -14.09 9.11 -34.44 -0.31 -14.41 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 N -0.48 -9.57 11.55 -9.87 -0.11 -9.68 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.49 6.42 -51.93 -0.33 0.16 16 27 H 0.05 0.46 6.31 -51.93 -0.33 0.13 16 28 H 0.07 0.69 6.54 -51.93 -0.34 0.35 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.72 6.29 -51.93 -0.33 0.39 16 33 H 0.05 0.69 7.82 -51.93 -0.41 0.28 16 34 H 0.08 1.24 5.07 -51.93 -0.26 0.98 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 37 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -30.40 328.08 -6.25 -36.65 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.19 Total: -2.31 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.75 Total: -9.34 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.90 Total: -41.74 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.13 Total: -4.11 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.40 -6.25 -36.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233751456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.374 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds