Wall clock time and date at job start Mon Mar 30 2020 07:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47237 * 299.99826 * 4 3 2 6 6 C 1.53000 * 109.47634 * 60.00037 * 4 3 2 7 7 C 1.53005 * 109.46612 * 64.99470 * 6 4 3 8 8 C 1.50700 * 109.47140 * 180.02562 * 4 3 2 9 9 N 1.29950 * 126.28677 * 240.02842 * 8 4 3 10 10 O 1.21299 * 110.25038 * 179.97438 * 9 8 4 11 11 C 1.33639 * 109.81583 * 359.97438 * 10 9 8 12 12 C 1.50694 * 126.55852 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47138 * 269.97990 * 12 11 10 14 14 C 1.50699 * 109.47045 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00198 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00304 * 179.97438 * 14 13 12 17 17 N 1.31524 * 119.99608 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00559 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47053 * 60.00246 * 18 16 14 20 20 H 1.48497 * 109.47517 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46970 * 300.00418 * 18 16 14 22 22 N 1.31140 * 106.89427 * 359.77034 * 11 10 9 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 28 28 H 1.09003 * 109.46983 * 60.00205 * 5 4 3 29 29 H 1.09003 * 109.46954 * 180.02562 * 5 4 3 30 30 H 1.08995 * 109.47205 * 300.00454 * 5 4 3 31 31 H 1.08992 * 109.47705 * 184.99611 * 6 4 3 32 32 H 1.09003 * 109.47122 * 305.00584 * 6 4 3 33 33 H 1.08996 * 109.47690 * 300.00431 * 7 6 4 34 34 H 1.09001 * 109.47054 * 60.01184 * 7 6 4 35 35 H 1.09004 * 109.46640 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47008 * 29.97333 * 12 11 10 37 37 H 1.08999 * 109.47510 * 149.97346 * 12 11 10 38 38 H 1.09000 * 109.47098 * 299.99632 * 13 12 11 39 39 H 1.09000 * 109.47015 * 59.99630 * 13 12 11 40 40 H 0.97001 * 119.99399 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.9967 0.7813 1.2484 6 6 3.9957 0.7817 -1.2501 7 6 3.5292 1.5376 -2.4959 8 6 3.8194 2.9162 0.0001 9 7 4.5228 3.5249 -0.9073 10 8 4.6614 4.6944 -0.6166 11 6 4.0402 4.9508 0.5385 12 6 3.9722 6.2799 1.2454 13 6 5.1564 6.4080 2.2057 14 6 5.0888 7.7374 2.9121 15 1 4.2822 8.4226 2.6973 16 6 6.0567 8.0790 3.8327 17 7 7.0393 7.2447 4.0940 18 14 5.9725 9.7266 4.7089 19 1 4.7027 9.8162 5.4736 20 1 7.1219 9.8510 5.6409 21 1 6.0263 10.8226 3.7084 22 7 3.4963 3.8258 0.9366 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.7157 -0.2719 1.2483 29 1 5.0833 0.8678 1.2481 30 1 3.5943 1.2646 2.1386 31 1 5.0848 0.7895 -1.2070 32 1 3.6413 -0.2481 -1.2961 33 1 2.4401 1.5298 -2.5391 34 1 3.8837 2.5674 -2.4500 35 1 3.9313 1.0540 -3.3861 36 1 4.0115 7.0844 0.5110 37 1 3.0403 6.3457 1.8069 38 1 5.1173 5.6035 2.9401 39 1 6.0883 6.3422 1.6442 40 1 7.7205 7.4852 4.7414 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233751456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:45 Heat of formation + Delta-G solvation = -11.837115 kcal Electronic energy + Delta-G solvation = -20860.835291 eV Core-core repulsion = 17678.192404 eV Total energy + Delta-G solvation = -3182.642886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.61047 -40.46365 -37.02384 -36.36138 -35.09943 -33.79344 -32.15378 -31.66047 -30.93272 -27.71448 -26.21838 -24.63263 -24.53142 -23.70303 -22.56393 -20.89732 -19.31795 -18.83541 -18.44788 -17.31053 -16.87676 -16.57226 -16.49543 -15.77520 -15.28915 -14.96271 -14.60014 -14.35850 -14.27571 -13.80376 -13.52873 -13.43404 -13.31246 -13.05188 -12.88145 -12.81710 -12.77162 -12.71637 -12.53547 -12.27880 -12.04612 -11.98372 -11.86454 -11.77644 -11.59721 -11.35073 -10.72697 -10.55012 -10.51743 -8.19527 -6.31611 0.07272 1.10867 1.46661 1.49548 1.57042 1.83121 2.26484 2.44890 2.74229 3.15745 3.18426 3.53075 3.74431 4.02038 4.11859 4.24180 4.28441 4.34547 4.38748 4.46028 4.51618 4.53066 4.53856 4.66780 4.76264 4.85777 4.91561 4.92924 4.95621 5.00760 5.10944 5.12458 5.26153 5.42197 5.43594 5.54151 5.78089 6.13969 6.14991 6.83553 7.10987 7.38429 8.92714 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.003811 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.042412 B = 7345.284078 C = 7595.510974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 O -0.390 6.390 4 C 0.210 3.790 5 C -0.171 4.171 6 C -0.138 4.138 7 C -0.160 4.160 8 C 0.176 3.824 9 N -0.381 5.381 10 O 0.060 5.940 11 C 0.206 3.794 12 C -0.014 4.014 13 C 0.035 3.965 14 C -0.540 4.540 15 H 0.078 0.922 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.289 1.289 21 H -0.263 1.263 22 N -0.500 5.500 23 H 0.098 0.902 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.111 0.889 38 H -0.007 1.007 39 H -0.001 1.001 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.651 -14.996 -10.109 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.309 6.309 4 C 0.169 3.831 5 C -0.229 4.229 6 C -0.176 4.176 7 C -0.218 4.218 8 C -0.097 4.097 9 N -0.094 5.094 10 O 0.005 5.995 11 C -0.014 4.014 12 C -0.052 4.052 13 C -0.003 4.003 14 C -0.578 4.578 15 H 0.096 0.904 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.794 3.206 19 H -0.190 1.190 20 H -0.214 1.214 21 H -0.187 1.187 22 N -0.234 5.234 23 H 0.117 0.883 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.011 0.989 39 H 0.017 0.983 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.569 -15.521 -10.451 21.016 hybrid contribution 0.573 0.832 0.741 1.253 sum -8.995 -14.689 -9.710 19.773 Atomic orbital electron populations 1.21761 0.92752 1.03611 1.02383 1.22879 0.96254 0.82385 1.01812 1.88000 1.18482 1.29179 1.95271 1.19527 0.82905 0.83108 0.97545 1.22370 1.01788 1.02432 0.96293 1.22087 1.01717 1.00892 0.92891 1.21964 1.01059 1.01321 0.97414 1.25770 0.96744 0.99567 0.87648 1.74529 1.21442 0.91047 1.22342 1.85273 1.57053 1.21558 1.35575 1.29552 0.88371 0.99222 0.84211 1.20515 1.02592 0.84660 0.97474 1.18932 0.91799 0.96644 0.92915 1.21538 1.10713 1.02470 1.23083 0.90424 1.25997 0.94820 1.01262 0.97662 1.70115 1.14050 1.38203 1.35084 0.85423 0.77731 0.79107 0.78332 1.19010 1.21427 1.18736 1.71913 1.24433 0.99416 1.27598 0.88328 0.92885 0.92580 0.91599 0.91144 0.87645 0.91402 0.92399 0.90480 0.87506 0.93042 0.92548 0.90805 0.86588 0.87100 0.98854 0.98280 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.04 0.76 5.86 71.98 0.42 1.18 16 3 O -0.39 -10.77 9.51 -148.98 -1.42 -12.19 16 4 C 0.21 5.83 0.79 -11.54 -0.01 5.82 16 5 C -0.17 -4.19 8.23 71.98 0.59 -3.60 16 6 C -0.14 -3.02 4.58 30.60 0.14 -2.88 16 7 C -0.16 -3.80 9.44 71.98 0.68 -3.12 16 8 C 0.18 6.35 6.39 138.46 0.89 7.24 16 9 N -0.38 -13.96 8.87 -60.31 -0.53 -14.49 16 10 O 0.06 2.30 11.31 74.87 0.85 3.15 16 11 C 0.21 8.16 7.77 88.38 0.69 8.84 16 12 C -0.01 -0.53 5.78 29.85 0.17 -0.36 16 13 C 0.04 1.80 4.96 29.85 0.15 1.95 16 14 C -0.54 -28.99 9.11 25.60 0.23 -28.76 16 15 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 16 C 0.00 0.04 5.46 84.65 0.46 0.50 16 17 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 18 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 N -0.50 -20.28 11.55 -303.19 -3.50 -23.79 16 23 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.01 6.42 -2.39 -0.02 1.00 16 27 H 0.07 0.99 6.31 -2.39 -0.02 0.98 16 28 H 0.10 1.78 6.54 -2.39 -0.02 1.77 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.11 1.64 6.29 -2.39 -0.01 1.63 16 33 H 0.05 1.23 7.82 -2.39 -0.02 1.21 16 34 H 0.06 1.66 5.07 -2.39 -0.01 1.64 16 35 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.12 3.93 8.14 -2.38 -0.02 3.91 16 37 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -66.78 328.08 3.88 -62.90 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.02 Total: 10.15 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 5.15 Total: -14.75 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -3.75 Total: -94.00 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.57 Total: -9.04 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -66.78 3.88 -62.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233751456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.065 kcal (2) G-P(sol) polarization free energy of solvation -66.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds