Wall clock time and date at job start Mon Mar 30 2020 07:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47236 * 2 1 4 4 C 1.42894 * 114.00398 * 175.23225 * 3 2 1 5 5 H 1.09002 * 109.47174 * 355.80829 * 4 3 2 6 6 C 1.53000 * 109.47500 * 115.80849 * 4 3 2 7 7 C 1.52995 * 109.47077 * 295.22847 * 6 4 3 8 8 C 1.50702 * 109.47202 * 235.81227 * 4 3 2 9 9 N 1.29951 * 126.28624 * 315.02045 * 8 4 3 10 10 O 1.21294 * 110.25100 * 179.68475 * 9 8 4 11 11 C 1.33647 * 109.81215 * 0.46990 * 10 9 8 12 12 C 1.50698 * 126.55471 * 179.80579 * 11 10 9 13 13 C 1.53002 * 109.46745 * 269.68876 * 12 11 10 14 14 H 1.08997 * 109.47531 * 54.99778 * 13 12 11 15 15 C 1.53002 * 109.46925 * 294.99425 * 13 12 11 16 16 C 1.50699 * 109.47280 * 174.99914 * 13 12 11 17 17 H 1.08005 * 119.99892 * 32.63695 * 16 13 12 18 18 C 1.37879 * 120.00278 * 212.64167 * 16 13 12 19 19 N 1.31507 * 119.99934 * 179.10076 * 18 16 13 20 20 Si 1.86798 * 119.99868 * 359.10808 * 18 16 13 21 21 H 1.48505 * 109.47423 * 87.68809 * 20 18 16 22 22 H 1.48494 * 109.47191 * 207.68860 * 20 18 16 23 23 H 1.48506 * 109.46970 * 327.68833 * 20 18 16 24 24 N 1.31130 * 106.89489 * 359.53846 * 11 10 9 25 25 H 1.09003 * 109.47067 * 60.00410 * 1 2 3 26 26 H 1.08999 * 109.46844 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47393 * 300.00111 * 1 2 3 28 28 H 1.09001 * 109.47077 * 239.99840 * 2 1 3 29 29 H 1.09003 * 109.47067 * 119.99590 * 2 1 3 30 30 H 1.09000 * 109.46884 * 55.23096 * 6 4 3 31 31 H 1.08997 * 109.47064 * 175.22584 * 6 4 3 32 32 H 1.08997 * 109.47479 * 53.73090 * 7 6 4 33 33 H 1.09004 * 109.47328 * 173.73254 * 7 6 4 34 34 H 1.08998 * 109.47210 * 293.72688 * 7 6 4 35 35 H 1.09001 * 109.47286 * 29.68174 * 12 11 10 36 36 H 1.08993 * 109.47820 * 149.68626 * 12 11 10 37 37 H 1.09003 * 109.47103 * 65.47610 * 15 13 12 38 38 H 1.08998 * 109.47361 * 185.47242 * 15 13 12 39 39 H 1.09001 * 109.47573 * 305.47714 * 15 13 12 40 40 H 0.97008 * 120.00066 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4265 1.4617 0.1085 5 1 3.8614 0.4716 0.2456 6 6 3.9865 2.0923 -1.1681 7 6 3.7403 1.1536 -2.3509 8 6 3.7717 2.3300 1.2909 9 7 3.2118 3.4598 1.6048 10 8 3.7100 3.9088 2.6155 11 6 4.6710 3.0879 3.0500 12 6 5.5341 3.2828 4.2699 13 6 6.7981 4.0529 3.8825 14 1 6.5194 4.9864 3.3936 15 6 7.6376 3.2059 2.9239 16 6 7.6018 4.3549 5.1210 17 1 7.5965 3.6629 5.9502 18 6 8.3437 5.5147 5.1957 19 7 9.0309 5.7868 6.2834 20 14 8.3725 6.6996 3.7519 21 1 7.2398 7.6526 3.8708 22 1 9.6535 7.4506 3.7533 23 1 8.2470 5.9374 2.4835 24 7 4.7155 2.0777 2.2152 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.4896 3.0451 -1.3508 31 1 5.0576 2.2575 -1.0521 32 1 2.6814 0.8997 -2.3991 33 1 4.0377 1.6485 -3.2755 34 1 4.3266 0.2440 -2.2210 35 1 4.9805 3.8472 5.0203 36 1 5.8115 2.3109 4.6779 37 1 7.0942 3.0691 1.9889 38 1 8.5823 3.7117 2.7243 39 1 7.8344 2.2335 3.3753 40 1 9.5531 6.6026 6.3358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233754581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:29 Heat of formation + Delta-G solvation = -21.389887 kcal Electronic energy + Delta-G solvation = -20748.229535 eV Core-core repulsion = 17565.172409 eV Total energy + Delta-G solvation = -3183.057126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.61702 -39.82656 -37.63159 -36.64806 -34.85022 -34.11119 -32.76776 -31.89405 -28.67058 -28.26074 -27.19867 -24.68279 -23.98335 -23.44889 -22.28668 -21.13112 -19.36027 -18.92181 -18.44440 -17.87536 -17.03924 -16.45323 -16.23217 -15.93240 -15.16929 -15.00422 -14.78556 -14.62936 -14.14713 -14.04611 -13.58204 -13.37003 -13.21625 -13.11531 -12.98580 -12.76350 -12.54280 -12.51316 -12.38520 -12.25295 -12.11542 -12.02834 -11.79246 -11.72373 -11.68426 -11.09422 -10.88219 -10.74560 -10.68701 -8.27521 -6.31529 0.11660 1.12044 1.35698 1.39618 1.47761 1.85246 2.17379 2.35769 2.81909 3.09115 3.16784 3.68586 3.79915 4.06025 4.13175 4.20771 4.24146 4.27201 4.40363 4.43369 4.44827 4.56033 4.69660 4.75547 4.78230 4.87040 4.94133 4.96141 4.97918 5.01750 5.08342 5.13772 5.23038 5.31464 5.36295 5.60162 5.66814 6.05067 6.29381 6.76247 7.13308 7.34667 8.88422 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.032371 B = 0.004181 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.763321 B = 6695.302211 C = 7015.283762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.387 6.387 4 C 0.187 3.813 5 H 0.110 0.890 6 C -0.126 4.126 7 C -0.142 4.142 8 C 0.150 3.850 9 N -0.390 5.390 10 O 0.061 5.939 11 C 0.207 3.793 12 C -0.012 4.012 13 C 0.016 3.984 14 H 0.030 0.970 15 C -0.131 4.131 16 C -0.509 4.509 17 H 0.051 0.949 18 C 0.022 3.978 19 N -0.943 5.943 20 Si 0.926 3.074 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.251 1.251 24 N -0.493 5.493 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.055 0.945 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.532 -11.701 -15.673 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.305 6.305 4 C 0.127 3.873 5 H 0.128 0.872 6 C -0.165 4.165 7 C -0.200 4.200 8 C -0.124 4.124 9 N -0.101 5.101 10 O 0.005 5.995 11 C -0.012 4.012 12 C -0.051 4.051 13 C -0.004 4.004 14 H 0.048 0.952 15 C -0.189 4.189 16 C -0.547 4.547 17 H 0.070 0.930 18 C -0.176 4.176 19 N -0.583 5.583 20 Si 0.751 3.249 21 H -0.193 1.193 22 H -0.215 1.215 23 H -0.174 1.174 24 N -0.227 5.227 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.070 -11.459 -16.240 24.352 hybrid contribution 0.623 0.861 0.196 1.080 sum -13.447 -10.599 -16.044 23.464 Atomic orbital electron populations 1.21761 0.92638 1.03607 1.02534 1.22948 0.96618 0.82138 1.01462 1.87994 1.19562 1.29033 1.93917 1.20278 0.82965 0.96656 0.87386 0.87221 1.21827 1.00817 1.00321 0.93547 1.21712 1.02615 0.99172 0.96464 1.26602 0.92588 0.93508 0.99728 1.74588 1.20707 1.13863 1.00985 1.85301 1.39448 1.44353 1.30364 1.29487 0.89172 0.84259 0.98289 1.20568 0.92615 1.04432 0.87480 1.19086 0.91542 0.94691 0.95104 0.95207 1.21925 0.99174 1.00163 0.97609 1.21062 1.27050 1.05596 1.00954 0.93039 1.25724 0.94784 0.99414 0.97666 1.70007 1.32216 1.26804 1.29272 0.86057 0.77726 0.79669 0.81435 1.19306 1.21451 1.17441 1.71917 1.21141 1.25067 1.04623 0.91699 0.88573 0.93347 0.90534 0.93146 0.92091 0.90767 0.91756 0.91093 0.91191 0.87229 0.86767 0.94769 0.94563 0.92555 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.04 0.75 6.17 71.98 0.44 1.19 16 3 O -0.39 -9.51 9.43 -148.98 -1.40 -10.92 16 4 C 0.19 4.64 2.79 29.85 0.08 4.72 16 5 H 0.11 2.30 7.60 -2.39 -0.02 2.28 16 6 C -0.13 -2.75 5.62 30.59 0.17 -2.58 16 7 C -0.14 -2.13 9.86 71.98 0.71 -1.42 16 8 C 0.15 4.88 7.10 138.46 0.98 5.87 16 9 N -0.39 -14.11 12.16 -60.32 -0.73 -14.84 16 10 O 0.06 2.23 11.31 74.81 0.85 3.07 16 11 C 0.21 7.30 6.98 88.38 0.62 7.92 16 12 C -0.01 -0.42 5.30 29.85 0.16 -0.26 16 13 C 0.02 0.68 1.85 -11.54 -0.02 0.66 16 14 H 0.03 1.31 5.66 -2.39 -0.01 1.30 16 15 C -0.13 -5.27 8.62 71.98 0.62 -4.65 16 16 C -0.51 -26.59 8.86 25.60 0.23 -26.36 16 17 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 18 C 0.02 1.22 5.47 84.66 0.46 1.68 16 19 N -0.94 -56.34 13.96 21.45 0.30 -56.04 16 20 Si 0.93 42.80 26.43 68.60 1.81 44.62 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.25 -10.95 6.37 99.48 0.63 -10.31 16 24 N -0.49 -16.94 11.05 -303.20 -3.35 -20.29 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 28 H 0.08 0.94 7.49 -2.39 -0.02 0.92 16 29 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 0.93 6.84 -2.39 -0.02 0.91 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 37 H 0.03 1.27 7.16 -2.39 -0.02 1.26 16 38 H 0.04 1.51 7.27 -2.39 -0.02 1.49 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 40 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -63.70 331.75 3.61 -60.09 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.94 Total: 8.92 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 5.20 Total: -14.61 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -3.79 Total: -91.17 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.56 Total: -7.84 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.81 Total: 44.62 kcal Total: -63.70 3.61 -60.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233754581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.703 kcal (2) G-P(sol) polarization free energy of solvation -63.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds