Wall clock time and date at job start Mon Mar 30 2020 07:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.47076 * 2 1 4 4 C 1.42897 * 113.99870 * 175.03643 * 3 2 1 5 5 H 1.08999 * 109.47773 * 34.73595 * 4 3 2 6 6 C 1.53002 * 109.47089 * 154.73586 * 4 3 2 7 7 C 1.52995 * 109.46928 * 294.56014 * 6 4 3 8 8 C 1.50709 * 109.47193 * 274.73518 * 4 3 2 9 9 N 1.29943 * 126.28370 * 314.69272 * 8 4 3 10 10 O 1.21301 * 110.24665 * 179.84210 * 9 8 4 11 11 C 1.33645 * 109.81100 * 0.42496 * 10 9 8 12 12 C 1.50699 * 126.54960 * 179.76088 * 11 10 9 13 13 H 1.08999 * 109.47313 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47437 * 59.96974 * 12 11 10 15 15 C 1.53007 * 109.47281 * 299.97224 * 12 11 10 16 16 C 1.50696 * 109.47482 * 184.99982 * 15 12 11 17 17 H 1.08005 * 119.99939 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00136 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99901 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99793 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46738 * 90.00516 * 20 18 16 22 22 H 1.48504 * 109.47277 * 209.99942 * 20 18 16 23 23 H 1.48496 * 109.47610 * 330.00326 * 20 18 16 24 24 N 1.31130 * 106.89695 * 359.73722 * 11 10 9 25 25 H 1.09001 * 109.46935 * 60.00060 * 1 2 3 26 26 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46762 * 299.99794 * 1 2 3 28 28 H 1.09000 * 109.47660 * 119.99783 * 2 1 3 29 29 H 1.09000 * 109.47380 * 240.00561 * 2 1 3 30 30 H 1.09001 * 109.47201 * 54.55762 * 6 4 3 31 31 H 1.08999 * 109.47031 * 174.55752 * 6 4 3 32 32 H 1.08997 * 109.47235 * 295.10423 * 7 6 4 33 33 H 1.08999 * 109.47266 * 55.11175 * 7 6 4 34 34 H 1.09006 * 109.47292 * 175.10806 * 7 6 4 35 35 H 1.08999 * 109.47222 * 300.00488 * 14 12 11 36 36 H 1.09003 * 109.46772 * 60.00002 * 14 12 11 37 37 H 1.08997 * 109.47005 * 179.97438 * 14 12 11 38 38 H 1.09003 * 109.46868 * 305.00061 * 15 12 11 39 39 H 1.09004 * 109.47147 * 64.99852 * 15 12 11 40 40 H 0.97007 * 119.99802 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4262 1.4618 0.1129 5 1 3.9006 0.6326 -0.4119 6 6 3.8821 2.7847 -0.5060 7 6 3.6055 2.7658 -2.0106 8 6 3.8190 1.4260 1.5675 9 7 3.2483 2.0801 2.5345 10 8 3.7969 1.8349 3.5882 11 6 4.8058 0.9821 3.3859 12 6 5.7391 0.4315 4.4332 13 1 6.4578 -0.2395 3.9628 14 6 4.9327 -0.3382 5.4812 15 6 6.4844 1.5843 5.1090 16 6 7.5051 1.0287 6.0685 17 1 7.6118 -0.0397 6.1844 18 6 8.3033 1.8844 6.7976 19 7 8.1736 3.1854 6.6561 20 14 9.5680 1.1957 7.9874 21 1 10.8574 0.9959 7.2783 22 1 9.7627 2.1488 9.1094 23 1 9.0894 -0.1051 8.5204 24 7 4.8281 0.7157 2.1022 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 3.3356 3.6083 -0.0464 31 1 4.9503 2.9170 -0.3345 32 1 4.2183 1.9982 -2.4831 33 1 2.5518 2.5471 -2.1836 34 1 3.8493 3.7389 -2.4371 35 1 4.2140 0.3328 5.9516 36 1 4.4017 -1.1595 4.9997 37 1 5.6078 -0.7368 6.2383 38 1 6.9873 2.1855 4.3515 39 1 5.7742 2.2063 5.6540 40 1 8.7350 3.7875 7.1693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233754917.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:43 Heat of formation + Delta-G solvation = -7.955794 kcal Electronic energy + Delta-G solvation = -20628.882775 eV Core-core repulsion = 17446.408196 eV Total energy + Delta-G solvation = -3182.474580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.14128 -38.76695 -35.91139 -35.26872 -33.82815 -32.50503 -31.09837 -30.70401 -27.18676 -27.13178 -24.65173 -23.33598 -23.11215 -22.47933 -21.44299 -19.60918 -17.60632 -17.12206 -16.89333 -16.51933 -15.90098 -14.90162 -14.61862 -14.49003 -14.47203 -14.10405 -13.41377 -12.78531 -12.64892 -12.62961 -12.39070 -12.12643 -11.97754 -11.69330 -11.55525 -11.45383 -11.38286 -11.09648 -11.02073 -10.90894 -10.81902 -10.60802 -10.55918 -10.17048 -10.00349 -9.91000 -9.27452 -9.19551 -8.45889 -6.09695 -4.13881 1.61232 2.53864 3.28030 3.33694 3.34522 3.36070 3.38784 3.85443 4.36940 4.49494 4.76810 4.81058 4.89401 5.04406 5.09900 5.18556 5.26700 5.35014 5.41493 5.53848 5.63690 5.70863 5.72177 5.80959 5.82819 5.89128 5.96188 5.98614 6.14882 6.22996 6.31062 6.54173 6.65529 6.80871 6.96770 7.46583 7.54805 7.85494 8.21546 8.59780 8.90413 9.50699 11.01600 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.003878 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.277794 B = 7218.976745 C = 7726.468916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.365 6.365 4 C 0.190 3.810 5 H 0.090 0.910 6 C -0.115 4.115 7 C -0.147 4.147 8 C 0.128 3.872 9 N -0.372 5.372 10 O 0.078 5.922 11 C 0.217 3.783 12 C -0.001 4.001 13 H 0.105 0.895 14 C -0.135 4.135 15 C 0.029 3.971 16 C -0.522 4.522 17 H 0.062 0.938 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 N -0.499 5.499 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.029 0.971 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.953 -5.578 -13.160 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.282 6.282 4 C 0.130 3.870 5 H 0.108 0.892 6 C -0.153 4.153 7 C -0.204 4.204 8 C -0.146 4.146 9 N -0.081 5.081 10 O 0.020 5.980 11 C -0.002 4.002 12 C -0.022 4.022 13 H 0.123 0.877 14 C -0.193 4.193 15 C -0.009 4.009 16 C -0.560 4.560 17 H 0.081 0.919 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 N -0.233 5.233 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.582 -4.905 -13.639 18.553 hybrid contribution 1.049 -0.479 0.892 1.458 sum -10.532 -5.384 -12.748 17.390 Atomic orbital electron populations 1.21723 0.93452 1.02226 1.03200 1.22560 0.95809 0.83694 1.00229 1.88001 1.19961 1.26737 1.93550 1.20192 0.82151 1.00384 0.84320 0.89249 1.21594 1.01862 0.95397 0.96476 1.21709 1.02382 1.01934 0.94396 1.26387 0.92945 0.95294 0.99991 1.74594 1.19779 1.21205 0.92522 1.85310 1.35716 1.48601 1.28388 1.29611 0.89163 0.87987 0.93409 1.20357 0.91934 1.00028 0.89849 0.87659 1.21781 1.00103 0.98844 0.98567 1.19245 0.95007 0.91252 0.95403 1.21051 1.18681 0.93142 1.23109 0.91950 1.25002 0.97328 0.94797 0.97087 1.69967 1.39624 1.01950 1.41391 0.86540 0.81679 0.78860 0.80620 1.20612 1.21202 1.19701 1.71898 1.20548 1.25098 1.05766 0.91762 0.91089 0.91776 0.93552 0.92945 0.90414 0.90018 0.92682 0.91784 0.92182 0.92297 0.94156 0.89611 0.96003 0.95242 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.05 0.60 6.45 37.16 0.24 0.84 16 3 O -0.37 -5.01 9.46 -35.23 -0.33 -5.34 16 4 C 0.19 2.66 2.65 -27.88 -0.07 2.58 16 5 H 0.09 1.12 7.89 -51.93 -0.41 0.71 16 6 C -0.12 -1.43 5.62 -26.73 -0.15 -1.58 16 7 C -0.15 -1.40 9.86 37.15 0.37 -1.04 16 8 C 0.13 2.27 6.83 -156.38 -1.07 1.20 16 9 N -0.37 -7.24 12.16 30.90 0.38 -6.87 16 10 O 0.08 1.58 11.31 18.10 0.20 1.78 16 11 C 0.22 4.27 7.02 -13.06 -0.09 4.18 16 12 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 13 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 14 C -0.13 -2.32 8.99 37.16 0.33 -1.98 16 15 C 0.03 0.70 4.43 -27.88 -0.12 0.58 16 16 C -0.52 -13.61 8.41 -34.44 -0.29 -13.90 16 17 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 20 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 N -0.50 -9.50 11.55 -9.87 -0.11 -9.62 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.58 7.96 -51.93 -0.41 0.17 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.62 7.71 -51.93 -0.40 0.22 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.49 6.95 -51.93 -0.36 1.13 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -29.72 339.14 -6.46 -36.18 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.59 Total: -2.93 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.83 Total: -8.86 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 1.00 Total: -41.57 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.13 Total: -3.56 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.72 -6.46 -36.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233754917.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.219 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds