Wall clock time and date at job start Mon Mar 30 2020 07:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.47076 * 2 1 4 4 C 1.42897 * 113.99870 * 175.03643 * 3 2 1 5 5 H 1.08999 * 109.47773 * 34.73595 * 4 3 2 6 6 C 1.53002 * 109.47089 * 154.73586 * 4 3 2 7 7 C 1.52995 * 109.46928 * 294.56014 * 6 4 3 8 8 C 1.50709 * 109.47193 * 274.73518 * 4 3 2 9 9 N 1.29943 * 126.28370 * 314.69272 * 8 4 3 10 10 O 1.21301 * 110.24665 * 179.84210 * 9 8 4 11 11 C 1.33645 * 109.81100 * 0.42496 * 10 9 8 12 12 C 1.50699 * 126.54960 * 179.76088 * 11 10 9 13 13 H 1.08999 * 109.47313 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47437 * 59.96974 * 12 11 10 15 15 C 1.53007 * 109.47281 * 299.97224 * 12 11 10 16 16 C 1.50696 * 109.47482 * 184.99982 * 15 12 11 17 17 H 1.08005 * 119.99939 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00136 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99901 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99793 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46738 * 90.00516 * 20 18 16 22 22 H 1.48504 * 109.47277 * 209.99942 * 20 18 16 23 23 H 1.48496 * 109.47610 * 330.00326 * 20 18 16 24 24 N 1.31130 * 106.89695 * 359.73722 * 11 10 9 25 25 H 1.09001 * 109.46935 * 60.00060 * 1 2 3 26 26 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46762 * 299.99794 * 1 2 3 28 28 H 1.09000 * 109.47660 * 119.99783 * 2 1 3 29 29 H 1.09000 * 109.47380 * 240.00561 * 2 1 3 30 30 H 1.09001 * 109.47201 * 54.55762 * 6 4 3 31 31 H 1.08999 * 109.47031 * 174.55752 * 6 4 3 32 32 H 1.08997 * 109.47235 * 295.10423 * 7 6 4 33 33 H 1.08999 * 109.47266 * 55.11175 * 7 6 4 34 34 H 1.09006 * 109.47292 * 175.10806 * 7 6 4 35 35 H 1.08999 * 109.47222 * 300.00488 * 14 12 11 36 36 H 1.09003 * 109.46772 * 60.00002 * 14 12 11 37 37 H 1.08997 * 109.47005 * 179.97438 * 14 12 11 38 38 H 1.09003 * 109.46868 * 305.00061 * 15 12 11 39 39 H 1.09004 * 109.47147 * 64.99852 * 15 12 11 40 40 H 0.97007 * 119.99802 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4262 1.4618 0.1129 5 1 3.9006 0.6326 -0.4119 6 6 3.8821 2.7847 -0.5060 7 6 3.6055 2.7658 -2.0106 8 6 3.8190 1.4260 1.5675 9 7 3.2483 2.0801 2.5345 10 8 3.7969 1.8349 3.5882 11 6 4.8058 0.9821 3.3859 12 6 5.7391 0.4315 4.4332 13 1 6.4578 -0.2395 3.9628 14 6 4.9327 -0.3382 5.4812 15 6 6.4844 1.5843 5.1090 16 6 7.5051 1.0287 6.0685 17 1 7.6118 -0.0397 6.1844 18 6 8.3033 1.8844 6.7976 19 7 8.1736 3.1854 6.6561 20 14 9.5680 1.1957 7.9874 21 1 10.8574 0.9959 7.2783 22 1 9.7627 2.1488 9.1094 23 1 9.0894 -0.1051 8.5204 24 7 4.8281 0.7157 2.1022 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 3.3356 3.6083 -0.0464 31 1 4.9503 2.9170 -0.3345 32 1 4.2183 1.9982 -2.4831 33 1 2.5518 2.5471 -2.1836 34 1 3.8493 3.7389 -2.4371 35 1 4.2140 0.3328 5.9516 36 1 4.4017 -1.1595 4.9997 37 1 5.6078 -0.7368 6.2383 38 1 6.9873 2.1855 4.3515 39 1 5.7742 2.2063 5.6540 40 1 8.7350 3.7875 7.1693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233754917.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:43 Heat of formation + Delta-G solvation = -26.712899 kcal Electronic energy + Delta-G solvation = -20629.696144 eV Core-core repulsion = 17446.408196 eV Total energy + Delta-G solvation = -3183.287949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.64974 -39.82116 -37.56752 -36.69518 -34.97056 -34.35526 -32.38791 -31.81378 -29.01511 -28.26015 -26.31151 -24.77865 -24.36521 -23.67021 -22.67288 -21.08172 -19.12845 -18.67247 -18.42782 -17.92511 -17.06578 -16.51213 -16.13845 -15.92059 -15.48273 -15.08217 -14.94517 -14.43542 -13.91955 -13.69439 -13.47192 -13.41716 -13.25885 -13.06251 -12.85093 -12.77352 -12.62508 -12.50389 -12.37631 -12.27143 -12.18974 -12.14278 -11.94391 -11.75305 -11.61997 -11.26324 -10.97826 -10.83627 -10.55072 -8.17911 -6.28844 0.07623 1.07794 1.47326 1.47632 1.58655 1.82584 2.24959 2.45094 2.60901 3.09290 3.17729 3.68391 3.80007 4.01533 4.06211 4.15571 4.22173 4.26034 4.27447 4.36751 4.39112 4.52684 4.73126 4.74251 4.77154 4.80996 4.94211 5.01988 5.03113 5.06373 5.09014 5.19448 5.35042 5.35085 5.40160 5.57039 5.79560 5.97711 6.15840 6.85275 7.08045 7.40693 8.94691 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.003878 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.277794 B = 7218.976745 C = 7726.468916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.375 6.375 4 C 0.188 3.812 5 H 0.109 0.891 6 C -0.114 4.114 7 C -0.138 4.138 8 C 0.136 3.864 9 N -0.391 5.391 10 O 0.060 5.940 11 C 0.212 3.788 12 C 0.009 3.991 13 H 0.115 0.885 14 C -0.129 4.129 15 C 0.036 3.964 16 C -0.528 4.528 17 H 0.080 0.920 18 C 0.001 3.999 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.255 1.255 24 N -0.503 5.503 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.029 0.971 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.086 0.914 38 H -0.013 1.013 39 H 0.004 0.996 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.080 -7.548 -14.133 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 O -0.293 6.293 4 C 0.128 3.872 5 H 0.127 0.873 6 C -0.153 4.153 7 C -0.196 4.196 8 C -0.138 4.138 9 N -0.103 5.103 10 O 0.006 5.994 11 C -0.008 4.008 12 C -0.011 4.011 13 H 0.133 0.867 14 C -0.186 4.186 15 C -0.002 4.002 16 C -0.566 4.566 17 H 0.098 0.902 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.179 1.179 24 N -0.237 5.237 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.006 0.994 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.719 -6.898 -14.596 19.949 hybrid contribution 1.035 0.144 1.117 1.530 sum -10.684 -6.754 -13.479 18.478 Atomic orbital electron populations 1.21739 0.92024 1.03608 1.02836 1.22804 0.97033 0.82621 1.00585 1.88005 1.19569 1.28413 1.93303 1.20492 0.82768 1.01877 0.82079 0.87313 1.21609 1.01180 0.94010 0.98460 1.21664 1.02737 1.03178 0.91988 1.27178 0.91712 0.93569 1.01332 1.74592 1.20632 1.22272 0.92781 1.85293 1.36083 1.49033 1.29006 1.29597 0.89308 0.88131 0.93756 1.20171 0.92208 0.98391 0.90365 0.86713 1.21737 0.99819 0.99216 0.97865 1.19038 0.94495 0.92244 0.94384 1.21500 1.18400 0.94016 1.22696 0.90224 1.25962 0.99655 0.94984 0.99114 1.70120 1.41051 1.03550 1.42849 0.85422 0.78862 0.78612 0.78016 1.20148 1.21484 1.17853 1.71909 1.20952 1.25476 1.05404 0.90850 0.88856 0.93373 0.95209 0.90461 0.92004 0.90562 0.91247 0.91659 0.91041 0.92729 0.91300 0.89556 0.99426 0.97798 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.05 0.95 6.45 71.98 0.46 1.41 16 3 O -0.38 -9.83 9.46 -148.98 -1.41 -11.24 16 4 C 0.19 5.05 2.65 29.85 0.08 5.13 16 5 H 0.11 2.49 7.89 -2.39 -0.02 2.47 16 6 C -0.11 -2.74 5.62 30.59 0.17 -2.57 16 7 C -0.14 -2.35 9.86 71.98 0.71 -1.64 16 8 C 0.14 4.81 6.83 138.47 0.95 5.75 16 9 N -0.39 -15.43 12.16 -60.34 -0.73 -16.17 16 10 O 0.06 2.48 11.31 74.82 0.85 3.33 16 11 C 0.21 8.36 7.02 88.38 0.62 8.98 16 12 C 0.01 0.35 2.81 -11.54 -0.03 0.32 16 13 H 0.11 4.28 8.14 -2.39 -0.02 4.26 16 14 C -0.13 -4.25 8.99 71.98 0.65 -3.60 16 15 C 0.04 1.83 4.43 29.85 0.13 1.96 16 16 C -0.53 -27.57 8.41 25.60 0.22 -27.35 16 17 H 0.08 3.80 7.06 -2.91 -0.02 3.78 16 18 C 0.00 0.04 5.46 84.65 0.46 0.51 16 19 N -0.94 -55.56 13.29 21.45 0.28 -55.28 16 20 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 23 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 24 N -0.50 -18.96 11.55 -303.22 -3.50 -22.47 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.03 0.71 7.96 -2.39 -0.02 0.69 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.11 7.71 -2.39 -0.02 1.09 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.09 2.85 6.95 -2.39 -0.02 2.83 16 38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 40 H 0.26 14.77 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -64.63 339.14 3.67 -60.96 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.00 Total: 9.51 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 5.16 Total: -12.79 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -3.95 Total: -93.91 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.56 Total: -7.91 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -64.63 3.67 -60.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233754917.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.246 kcal (2) G-P(sol) polarization free energy of solvation -64.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds