Wall clock time and date at job start Mon Mar 30 2020 07:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47335 * 2 1 4 4 C 1.42896 * 114.00232 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47455 * 180.02562 * 4 3 2 6 6 N 1.29945 * 126.28580 * 269.98131 * 5 4 3 7 7 O 1.21304 * 110.24837 * 180.02562 * 6 5 4 8 8 C 1.33635 * 109.81456 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.55471 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46869 * 269.95636 * 9 8 7 11 11 C 1.53001 * 109.47237 * 299.99416 * 10 9 8 12 12 C 1.50706 * 109.46853 * 179.97438 * 10 9 8 13 13 H 1.08002 * 120.00001 * 356.54480 * 12 10 9 14 14 C 1.37878 * 119.99920 * 176.53869 * 12 10 9 15 15 N 1.31510 * 119.99826 * 7.25321 * 14 12 10 16 16 Si 1.86794 * 119.99897 * 187.24915 * 14 12 10 17 17 H 1.48498 * 109.47375 * 84.94900 * 16 14 12 18 18 H 1.48509 * 109.46918 * 204.95033 * 16 14 12 19 19 H 1.48498 * 109.47349 * 324.94929 * 16 14 12 20 20 C 1.53001 * 109.47174 * 59.99935 * 10 9 8 21 21 C 1.53001 * 109.47235 * 59.99934 * 20 10 9 22 22 N 1.31132 * 106.89593 * 359.97438 * 8 7 6 23 23 H 1.09000 * 109.47113 * 300.00460 * 1 2 3 24 24 H 1.08999 * 109.46640 * 60.00307 * 1 2 3 25 25 H 1.09001 * 109.47288 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47113 * 239.99540 * 2 1 3 27 27 H 1.08999 * 109.46640 * 119.99693 * 2 1 3 28 28 H 1.09001 * 109.47170 * 59.99936 * 4 3 2 29 29 H 1.09005 * 109.47037 * 299.99939 * 4 3 2 30 30 H 1.09003 * 109.47095 * 29.95481 * 9 8 7 31 31 H 1.08997 * 109.47440 * 149.95147 * 9 8 7 32 32 H 1.09004 * 109.46698 * 62.06642 * 11 10 9 33 33 H 1.08992 * 109.47132 * 182.06356 * 11 10 9 34 34 H 1.08997 * 109.47094 * 302.06686 * 11 10 9 35 35 H 0.97000 * 119.99853 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.46794 * 179.97438 * 20 10 9 37 37 H 1.08996 * 109.46662 * 299.99531 * 20 10 9 38 38 H 1.08997 * 109.46756 * 179.97438 * 21 20 10 39 39 H 1.08997 * 109.46617 * 299.99760 * 21 20 10 40 40 H 1.09001 * 109.47008 * 59.99877 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8196 2.9161 0.0012 6 7 4.0186 3.6593 -1.0460 7 8 4.3195 4.7855 -0.7104 8 6 4.3411 4.8703 0.6231 9 6 4.6673 6.0944 1.4394 10 6 6.1712 6.1359 1.7177 11 6 6.5813 4.8820 2.4926 12 6 6.4975 7.3603 2.5335 13 1 5.7204 8.0698 2.7770 14 6 7.7879 7.5747 2.9692 15 7 8.7601 6.7913 2.5561 16 14 8.1554 8.9781 4.1459 17 1 7.9091 8.5319 5.5407 18 1 9.5756 9.3870 4.0005 19 1 7.2737 10.1310 3.8321 20 6 6.9338 6.1887 0.3923 21 6 6.5237 7.4426 -0.3825 22 7 4.0232 3.6852 1.0855 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8341 0.9764 -0.8892 29 1 3.8333 0.9766 0.8909 30 1 4.3751 6.9877 0.8874 31 1 4.1240 6.0568 2.3836 32 1 6.3792 3.9984 1.8871 33 1 7.6457 4.9290 2.7227 34 1 6.0113 4.8253 3.4199 35 1 9.6680 6.9423 2.8623 36 1 8.0052 6.2187 0.5906 37 1 6.6979 5.3033 -0.1980 38 1 7.0674 7.4804 -1.3265 39 1 5.4523 7.4129 -0.5808 40 1 6.7597 8.3279 0.2080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233761594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:39 Heat of formation + Delta-G solvation = 7.533767 kcal Electronic energy + Delta-G solvation = -21088.681940 eV Core-core repulsion = 17906.879038 eV Total energy + Delta-G solvation = -3181.802902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.10654 -38.27756 -37.06033 -35.30010 -32.83792 -31.68167 -31.08154 -29.24003 -27.52001 -26.75848 -25.25052 -23.08721 -23.01012 -22.19950 -21.26003 -18.75027 -17.79968 -16.94910 -16.65445 -16.12309 -15.81275 -15.16656 -14.78634 -14.17530 -13.66529 -13.45648 -13.28553 -12.90427 -12.59017 -12.39762 -12.16026 -11.81635 -11.63821 -11.61669 -11.46312 -11.06883 -11.02164 -10.85766 -10.68477 -10.57621 -10.40607 -10.20874 -10.02621 -9.85381 -9.55859 -9.36063 -9.05703 -8.73933 -8.34511 -6.02929 -4.12353 1.60752 2.50861 3.28257 3.35451 3.35969 3.40237 3.53847 4.21783 4.36748 4.41117 4.81574 4.92512 5.10514 5.13505 5.22612 5.25666 5.44453 5.63751 5.68666 5.88339 5.98869 6.10183 6.14387 6.35450 6.46117 6.50446 6.55918 6.70974 6.92174 6.92917 7.00003 7.13847 7.31114 7.45283 7.62556 7.70172 7.97044 8.12271 8.36032 8.62970 8.85902 9.51960 10.98426 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036990 B = 0.004160 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.789622 B = 6728.597849 C = 7005.788003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.383 6.383 4 C 0.163 3.837 5 C 0.159 3.841 6 N -0.384 5.384 7 O 0.076 5.924 8 C 0.224 3.776 9 C -0.028 4.028 10 C 0.079 3.921 11 C -0.132 4.132 12 C -0.505 4.505 13 H 0.060 0.940 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.112 4.112 21 C -0.133 4.133 22 N -0.483 5.483 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.009 0.991 33 H 0.083 0.917 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.097 0.903 37 H 0.008 0.992 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.634 -9.132 -4.283 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.301 6.301 4 C 0.085 3.915 5 C -0.114 4.114 6 N -0.094 5.094 7 O 0.017 5.983 8 C 0.005 3.995 9 C -0.067 4.067 10 C 0.078 3.922 11 C -0.190 4.190 12 C -0.543 4.543 13 H 0.078 0.922 14 C -0.133 4.133 15 N -0.519 5.519 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.150 4.150 21 C -0.191 4.191 22 N -0.217 5.217 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.028 0.972 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.027 0.973 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.743 -9.640 -4.763 14.510 hybrid contribution 0.491 0.562 0.661 0.997 sum -9.252 -9.078 -4.102 13.595 Atomic orbital electron populations 1.21740 0.93522 1.02227 1.03335 1.22497 0.95779 0.83195 1.00368 1.87944 1.19677 1.26990 1.95525 1.20245 0.82301 0.86534 1.02424 1.25177 1.02413 0.99211 0.84647 1.74533 1.18735 0.91937 1.24231 1.85300 1.62724 1.24454 1.25819 1.29445 0.91477 0.97416 0.81174 1.20962 1.02495 0.87092 0.96117 1.18197 0.84980 0.95568 0.93472 1.21821 1.04113 0.95011 0.98008 1.20883 0.94426 1.06139 1.32807 0.92213 1.24851 0.96138 0.96273 0.96009 1.69817 1.00313 1.38582 1.43190 0.86629 0.77372 0.82477 0.81630 1.20640 1.21419 1.19937 1.21631 1.04695 0.93785 0.94850 1.21666 0.98582 1.00698 0.98121 1.71928 1.20057 1.01186 1.28567 0.91682 0.91845 0.90951 0.93145 0.92928 0.90734 0.90030 0.88950 0.88386 0.97200 0.89833 0.95109 0.92911 0.88507 0.97308 0.95589 0.94854 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.57 6.66 37.16 0.25 0.82 16 3 O -0.38 -5.48 10.33 -35.23 -0.36 -5.85 16 4 C 0.16 2.31 6.56 36.01 0.24 2.55 16 5 C 0.16 2.92 7.85 -156.38 -1.23 1.69 16 6 N -0.38 -7.42 12.16 30.90 0.38 -7.04 16 7 O 0.08 1.50 10.70 18.12 0.19 1.69 16 8 C 0.22 4.41 5.75 -13.05 -0.08 4.33 16 9 C -0.03 -0.54 4.50 -27.88 -0.13 -0.66 16 10 C 0.08 1.78 0.30 -155.66 -0.05 1.74 16 11 C -0.13 -3.09 7.92 37.16 0.29 -2.79 16 12 C -0.50 -12.32 6.74 -34.44 -0.23 -12.55 16 13 H 0.06 1.43 7.76 -52.49 -0.41 1.02 16 14 C 0.07 1.74 5.11 -17.82 -0.09 1.65 16 15 N -0.88 -23.02 9.40 55.43 0.52 -22.50 16 16 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 C -0.11 -2.52 4.55 -26.73 -0.12 -2.64 16 21 C -0.13 -2.70 9.31 37.16 0.35 -2.36 16 22 N -0.48 -9.63 10.86 -9.87 -0.11 -9.74 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.66 6.43 -51.93 -0.33 1.32 16 31 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 32 H 0.01 0.21 6.80 -51.93 -0.35 -0.14 16 33 H 0.08 2.14 6.03 -51.93 -0.31 1.83 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.10 2.45 6.08 -51.93 -0.32 2.13 16 37 H 0.01 0.19 6.75 -51.93 -0.35 -0.16 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.03 0.61 6.43 -51.93 -0.33 0.28 16 40 H 0.06 1.39 7.22 -51.93 -0.37 1.01 16 LS Contribution 323.06 15.07 4.87 4.87 Total: -1.00 -27.65 323.06 -6.09 -33.74 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.14 Total: -0.97 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.41 Total: -9.12 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.79 Total: -39.29 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.17 Total: -4.15 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.65 -6.09 -33.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233761594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.273 kcal (2) G-P(sol) polarization free energy of solvation -27.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds