Wall clock time and date at job start Mon Mar 30 2020 07:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47335 * 2 1 4 4 C 1.42896 * 114.00232 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47455 * 180.02562 * 4 3 2 6 6 N 1.29945 * 126.28580 * 269.98131 * 5 4 3 7 7 O 1.21304 * 110.24837 * 180.02562 * 6 5 4 8 8 C 1.33635 * 109.81456 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.55471 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46869 * 269.95636 * 9 8 7 11 11 C 1.53001 * 109.47237 * 299.99416 * 10 9 8 12 12 C 1.50706 * 109.46853 * 179.97438 * 10 9 8 13 13 H 1.08002 * 120.00001 * 356.54480 * 12 10 9 14 14 C 1.37878 * 119.99920 * 176.53869 * 12 10 9 15 15 N 1.31510 * 119.99826 * 7.25321 * 14 12 10 16 16 Si 1.86794 * 119.99897 * 187.24915 * 14 12 10 17 17 H 1.48498 * 109.47375 * 84.94900 * 16 14 12 18 18 H 1.48509 * 109.46918 * 204.95033 * 16 14 12 19 19 H 1.48498 * 109.47349 * 324.94929 * 16 14 12 20 20 C 1.53001 * 109.47174 * 59.99935 * 10 9 8 21 21 C 1.53001 * 109.47235 * 59.99934 * 20 10 9 22 22 N 1.31132 * 106.89593 * 359.97438 * 8 7 6 23 23 H 1.09000 * 109.47113 * 300.00460 * 1 2 3 24 24 H 1.08999 * 109.46640 * 60.00307 * 1 2 3 25 25 H 1.09001 * 109.47288 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47113 * 239.99540 * 2 1 3 27 27 H 1.08999 * 109.46640 * 119.99693 * 2 1 3 28 28 H 1.09001 * 109.47170 * 59.99936 * 4 3 2 29 29 H 1.09005 * 109.47037 * 299.99939 * 4 3 2 30 30 H 1.09003 * 109.47095 * 29.95481 * 9 8 7 31 31 H 1.08997 * 109.47440 * 149.95147 * 9 8 7 32 32 H 1.09004 * 109.46698 * 62.06642 * 11 10 9 33 33 H 1.08992 * 109.47132 * 182.06356 * 11 10 9 34 34 H 1.08997 * 109.47094 * 302.06686 * 11 10 9 35 35 H 0.97000 * 119.99853 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.46794 * 179.97438 * 20 10 9 37 37 H 1.08996 * 109.46662 * 299.99531 * 20 10 9 38 38 H 1.08997 * 109.46756 * 179.97438 * 21 20 10 39 39 H 1.08997 * 109.46617 * 299.99760 * 21 20 10 40 40 H 1.09001 * 109.47008 * 59.99877 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8196 2.9161 0.0012 6 7 4.0186 3.6593 -1.0460 7 8 4.3195 4.7855 -0.7104 8 6 4.3411 4.8703 0.6231 9 6 4.6673 6.0944 1.4394 10 6 6.1712 6.1359 1.7177 11 6 6.5813 4.8820 2.4926 12 6 6.4975 7.3603 2.5335 13 1 5.7204 8.0698 2.7770 14 6 7.7879 7.5747 2.9692 15 7 8.7601 6.7913 2.5561 16 14 8.1554 8.9781 4.1459 17 1 7.9091 8.5319 5.5407 18 1 9.5756 9.3870 4.0005 19 1 7.2737 10.1310 3.8321 20 6 6.9338 6.1887 0.3923 21 6 6.5237 7.4426 -0.3825 22 7 4.0232 3.6852 1.0855 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8341 0.9764 -0.8892 29 1 3.8333 0.9766 0.8909 30 1 4.3751 6.9877 0.8874 31 1 4.1240 6.0568 2.3836 32 1 6.3792 3.9984 1.8871 33 1 7.6457 4.9290 2.7227 34 1 6.0113 4.8253 3.4199 35 1 9.6680 6.9423 2.8623 36 1 8.0052 6.2187 0.5906 37 1 6.6979 5.3033 -0.1980 38 1 7.0674 7.4804 -1.3265 39 1 5.4523 7.4129 -0.5808 40 1 6.7597 8.3279 0.2080 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233761594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:38 Heat of formation + Delta-G solvation = -9.012637 kcal Electronic energy + Delta-G solvation = -21089.399446 eV Core-core repulsion = 17906.879038 eV Total energy + Delta-G solvation = -3182.520408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.58639 -39.26298 -38.80889 -36.74227 -34.44016 -33.15170 -32.19430 -30.95681 -28.75304 -28.35396 -27.17330 -24.56208 -23.95541 -23.74581 -22.74155 -20.48802 -19.25158 -18.36639 -17.74417 -17.59140 -17.06394 -16.65067 -16.34784 -15.71027 -15.19689 -15.06880 -14.42385 -14.17518 -13.88241 -13.82102 -13.49948 -13.34081 -13.23662 -12.78626 -12.68531 -12.61100 -12.49150 -12.38021 -12.23024 -12.17058 -12.11750 -11.98312 -11.75278 -11.26552 -11.13606 -10.78220 -10.74682 -10.52517 -10.26026 -7.94400 -6.08215 0.12848 1.09390 1.50305 1.53950 1.59715 1.89917 2.35934 2.53448 2.95980 3.17887 3.30691 3.89581 4.07492 4.15766 4.29867 4.32735 4.41026 4.47001 4.49249 4.56717 4.72711 4.81121 4.82722 4.93535 4.96259 5.00126 5.03447 5.09792 5.23615 5.26485 5.29580 5.50893 5.70579 5.76250 5.82461 6.04050 6.07902 6.25084 6.46670 6.95933 7.14241 7.58144 9.05360 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036990 B = 0.004160 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.789622 B = 6728.597849 C = 7005.788003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.410 6.410 4 C 0.162 3.838 5 C 0.158 3.842 6 N -0.395 5.395 7 O 0.069 5.931 8 C 0.220 3.780 9 C -0.021 4.021 10 C 0.075 3.925 11 C -0.120 4.120 12 C -0.509 4.509 13 H 0.065 0.935 14 C 0.028 3.972 15 N -0.904 5.904 16 Si 0.943 3.057 17 H -0.282 1.282 18 H -0.294 1.294 19 H -0.267 1.267 20 C -0.105 4.105 21 C -0.126 4.126 22 N -0.499 5.499 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.009 0.991 33 H 0.057 0.943 34 H 0.028 0.972 35 H 0.257 0.743 36 H 0.066 0.934 37 H 0.006 0.994 38 H 0.037 0.963 39 H 0.052 0.948 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 -9.561 -4.506 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.329 6.329 4 C 0.085 3.915 5 C -0.116 4.116 6 N -0.108 5.108 7 O 0.012 5.988 8 C 0.001 3.999 9 C -0.060 4.060 10 C 0.074 3.926 11 C -0.178 4.178 12 C -0.547 4.547 13 H 0.083 0.917 14 C -0.172 4.172 15 N -0.543 5.543 16 Si 0.770 3.230 17 H -0.208 1.208 18 H -0.220 1.220 19 H -0.191 1.191 20 C -0.143 4.143 21 C -0.183 4.183 22 N -0.234 5.234 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.024 0.976 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.003 -10.056 -4.990 15.719 hybrid contribution 0.845 0.604 0.716 1.262 sum -10.158 -9.452 -4.274 14.519 Atomic orbital electron populations 1.21781 0.92697 1.03735 1.02481 1.22807 0.96468 0.81482 1.01886 1.87904 1.19416 1.29773 1.95799 1.20448 0.82836 0.84077 1.04180 1.25951 1.01072 1.00717 0.83818 1.74520 1.19554 0.91982 1.24698 1.85276 1.63001 1.24830 1.25676 1.29407 0.91629 0.97473 0.81348 1.20827 1.00324 0.87934 0.96910 1.18158 0.87047 0.94363 0.93047 1.21676 1.02306 0.95740 0.98054 1.21167 0.94380 1.06626 1.32502 0.91702 1.25456 0.96308 0.98111 0.97303 1.69961 1.00327 1.39873 1.44137 0.85804 0.76820 0.80540 0.79815 1.20811 1.22008 1.19112 1.21494 1.02785 0.94828 0.95217 1.21577 0.99979 0.98742 0.98049 1.71938 1.20450 1.01543 1.29443 0.92652 0.92569 0.88259 0.91411 0.91559 0.88589 0.88614 0.87167 0.87632 0.97157 0.92372 0.95320 0.93369 0.91561 0.97574 0.94389 0.92915 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.05 0.85 6.66 71.98 0.48 1.33 16 3 O -0.41 -11.03 10.33 -148.98 -1.54 -12.57 16 4 C 0.16 4.29 6.56 71.24 0.47 4.76 16 5 C 0.16 5.60 7.85 138.46 1.09 6.69 16 6 N -0.40 -14.83 12.16 -60.33 -0.73 -15.57 16 7 O 0.07 2.63 10.70 74.90 0.80 3.43 16 8 C 0.22 8.43 5.75 88.38 0.51 8.94 16 9 C -0.02 -0.80 4.50 29.85 0.13 -0.66 16 10 C 0.08 3.34 0.30 -52.92 -0.02 3.33 16 11 C -0.12 -5.63 7.92 71.98 0.57 -5.06 16 12 C -0.51 -24.44 6.74 25.60 0.17 -24.27 16 13 H 0.06 3.00 7.76 -2.91 -0.02 2.98 16 14 C 0.03 1.39 5.11 84.66 0.43 1.82 16 15 N -0.90 -47.84 9.40 21.45 0.20 -47.64 16 16 Si 0.94 40.65 29.54 68.60 2.03 42.68 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 20 C -0.11 -4.71 4.55 30.59 0.14 -4.57 16 21 C -0.13 -4.95 9.31 71.98 0.67 -4.28 16 22 N -0.50 -19.37 10.86 -303.21 -3.29 -22.66 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.11 3.72 6.43 -2.39 -0.02 3.70 16 31 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 32 H 0.01 0.44 6.80 -2.38 -0.02 0.42 16 33 H 0.06 3.02 6.03 -2.39 -0.01 3.01 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 35 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 36 H 0.07 3.40 6.08 -2.39 -0.01 3.38 16 37 H 0.01 0.25 6.75 -2.39 -0.02 0.24 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.83 6.43 -2.39 -0.02 1.82 16 40 H 0.05 2.16 7.22 -2.39 -0.02 2.15 16 Total: -1.00 -58.18 323.06 3.87 -54.31 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.02 Total: 11.49 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 5.38 Total: -13.47 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -3.83 Total: -85.87 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.74 Total: -9.13 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -58.18 3.87 -54.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233761594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.297 kcal (2) G-P(sol) polarization free energy of solvation -58.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds