Wall clock time and date at job start Mon Mar 30 2020 07:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42904 * 109.47289 * 2 1 4 4 C 1.42892 * 114.00090 * 184.65619 * 3 2 1 5 5 H 1.09000 * 109.47339 * 327.75763 * 4 3 2 6 6 C 1.50700 * 109.47408 * 87.75590 * 4 3 2 7 7 N 1.29952 * 126.28547 * 44.97666 * 6 4 3 8 8 O 1.21299 * 110.24828 * 180.02562 * 7 6 4 9 9 C 1.33640 * 109.81444 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.55130 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47408 * 270.02306 * 10 9 8 12 12 H 1.08002 * 119.99783 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00371 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99911 * 359.73086 * 13 11 10 15 15 Si 1.86800 * 120.00473 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47279 * 90.00055 * 15 13 11 17 17 H 1.48492 * 109.47573 * 210.00630 * 15 13 11 18 18 H 1.48499 * 109.47015 * 330.00726 * 15 13 11 19 19 N 1.31125 * 106.89813 * 0.22477 * 9 8 7 20 20 C 1.52997 * 109.47287 * 207.75468 * 4 3 2 21 21 C 1.53000 * 109.47406 * 303.36439 * 20 4 3 22 22 C 1.53006 * 109.47084 * 63.36087 * 20 4 3 23 23 C 1.53001 * 109.47704 * 183.35957 * 20 4 3 24 24 H 1.09003 * 109.47223 * 300.00092 * 1 2 3 25 25 H 1.09003 * 109.47473 * 59.99993 * 1 2 3 26 26 H 1.09003 * 109.47430 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46931 * 240.00360 * 2 1 3 28 28 H 1.09003 * 109.47473 * 120.00007 * 2 1 3 29 29 H 1.09005 * 109.47331 * 150.02236 * 10 9 8 30 30 H 1.09007 * 109.47170 * 30.02531 * 10 9 8 31 31 H 0.97004 * 119.99942 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.47161 * 59.99445 * 21 20 4 33 33 H 1.08999 * 109.47025 * 179.97438 * 21 20 4 34 34 H 1.08998 * 109.46515 * 299.99922 * 21 20 4 35 35 H 1.09003 * 109.46640 * 55.26912 * 22 20 4 36 36 H 1.09002 * 109.47273 * 175.26882 * 22 20 4 37 37 H 1.08997 * 109.47244 * 295.27071 * 22 20 4 38 38 H 1.09004 * 109.46515 * 60.00028 * 23 20 4 39 39 H 1.08999 * 109.47537 * 179.97438 * 23 20 4 40 40 H 1.08999 * 109.47191 * 300.00437 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4267 1.4615 -0.1060 5 1 3.8974 0.6097 0.3848 6 6 3.8218 1.4847 -1.5601 7 7 3.2511 2.1757 -2.5012 8 8 3.8035 1.9759 -3.5625 9 6 4.8098 1.1128 -3.3940 10 6 5.7428 0.6026 -4.4618 11 6 5.1687 -0.6488 -5.0745 12 1 4.2226 -1.0358 -4.7258 13 6 5.8507 -1.2992 -6.0808 14 7 6.9997 -0.8245 -6.5098 15 14 5.1394 -2.8509 -6.8398 16 1 4.2806 -2.4879 -7.9955 17 1 6.2452 -3.7282 -7.3009 18 1 4.3269 -3.5701 -5.8260 19 7 4.8269 0.7906 -2.1231 20 6 3.8860 2.7561 0.5679 21 6 3.1617 3.9456 -0.0656 22 6 3.5597 2.6971 2.0616 23 6 5.3957 2.9203 0.3818 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 6.7134 0.3783 -4.0194 30 1 5.8623 1.3631 -5.2336 31 1 7.4797 -1.2823 -7.2176 32 1 2.0861 3.8287 0.0670 33 1 3.4885 4.8678 0.4148 34 1 3.3941 3.9876 -1.1297 35 1 4.0069 1.8030 2.4960 36 1 3.9613 3.5814 2.5564 37 1 2.4786 2.6648 2.1964 38 1 5.6281 2.9623 -0.6824 39 1 5.7228 3.8428 0.8615 40 1 5.9117 2.0729 0.8331 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233763265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:16 Heat of formation + Delta-G solvation = -3.150964 kcal Electronic energy + Delta-G solvation = -21316.232596 eV Core-core repulsion = 18133.966370 eV Total energy + Delta-G solvation = -3182.266227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.76036 -39.14409 -36.19090 -34.90857 -33.69114 -31.90604 -31.10209 -28.48475 -27.41141 -27.15755 -26.66137 -24.02270 -22.93024 -22.59419 -20.82374 -18.93078 -17.52691 -16.91590 -16.53483 -16.31445 -15.69374 -15.20051 -14.78870 -14.42609 -13.82513 -13.64308 -13.33136 -12.77945 -12.57055 -12.50457 -12.29506 -12.17273 -12.06077 -11.66207 -11.60084 -11.40344 -11.29420 -11.14857 -11.02631 -10.82710 -10.76100 -10.66084 -10.48963 -10.26314 -10.09664 -9.83847 -9.75838 -8.90833 -8.62799 -6.26317 -4.31944 1.98883 2.93551 3.22785 3.29189 3.33673 3.51045 3.81621 4.16019 4.31617 4.71984 4.76720 4.95979 5.02497 5.03376 5.12958 5.17199 5.35639 5.37426 5.52542 5.59662 5.65160 5.74214 5.80471 5.85581 5.92589 5.95125 6.02772 6.06360 6.10490 6.16927 6.38728 6.49797 6.59851 6.68957 7.10716 7.15024 7.20018 7.67018 7.91110 8.68165 8.98991 9.32943 10.84089 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.005097 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.516136 B = 5492.197988 C = 6227.830789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.363 6.363 4 C 0.198 3.802 5 H 0.085 0.915 6 C 0.134 3.866 7 N -0.382 5.382 8 O 0.059 5.941 9 C 0.234 3.766 10 C 0.101 3.899 11 C -0.523 4.523 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.888 5.888 15 Si 0.906 3.094 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.273 1.273 19 N -0.504 5.504 20 C -0.058 4.058 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.139 4.139 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.268 0.732 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 4.938 14.092 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 O -0.281 6.281 4 C 0.138 3.862 5 H 0.103 0.897 6 C -0.140 4.140 7 N -0.095 5.095 8 O 0.003 5.997 9 C 0.016 3.984 10 C 0.063 3.937 11 C -0.562 4.562 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.732 3.268 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 N -0.239 5.239 20 C -0.059 4.059 21 C -0.196 4.196 22 C -0.193 4.193 23 C -0.197 4.197 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.290 5.377 14.488 17.087 hybrid contribution -0.040 -1.235 -0.764 1.453 sum -7.331 4.142 13.723 16.101 Atomic orbital electron populations 1.21707 0.93562 1.02156 1.03009 1.22566 0.95697 0.83782 1.00340 1.87956 1.19881 1.26535 1.93711 1.20171 0.81976 0.99243 0.84808 0.89666 1.26167 0.93147 0.95116 0.99580 1.74533 1.19891 1.22706 0.92350 1.85285 1.36330 1.49672 1.28370 1.30119 0.88765 0.85528 0.93975 1.18186 0.90930 0.96800 0.87820 1.20783 1.07100 1.08618 1.19701 0.92163 1.24917 0.94727 0.97941 0.96074 1.69925 1.14250 1.39976 1.28371 0.86363 0.78735 0.82181 0.79477 1.20253 1.20831 1.19728 1.71938 1.21254 1.24962 1.05710 1.20579 0.96012 0.93602 0.95668 1.21829 1.00810 0.95762 1.01205 1.21801 1.02206 1.01650 0.93601 1.21834 0.93553 1.01904 1.02370 0.91935 0.91809 0.91161 0.93304 0.93122 0.91405 0.92454 0.92266 0.91746 0.93037 0.91876 0.92748 0.92295 0.91796 0.92549 0.92003 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.28 37.15 0.38 -1.25 16 2 C 0.05 0.71 6.44 37.15 0.24 0.95 16 3 O -0.36 -5.56 8.72 -35.23 -0.31 -5.86 16 4 C 0.20 3.10 1.93 -27.88 -0.05 3.05 16 5 H 0.09 1.28 7.86 -51.93 -0.41 0.87 16 6 C 0.13 2.59 5.07 -156.37 -0.79 1.80 16 7 N -0.38 -7.91 10.49 30.90 0.32 -7.58 16 8 O 0.06 1.30 11.31 18.11 0.20 1.50 16 9 C 0.23 5.30 7.70 -13.06 -0.10 5.20 16 10 C 0.10 2.48 5.60 -29.04 -0.16 2.32 16 11 C -0.52 -14.06 9.09 -34.44 -0.31 -14.37 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 15 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 19 N -0.50 -10.93 11.55 -9.87 -0.11 -11.05 16 20 C -0.06 -0.77 0.63 -154.51 -0.10 -0.86 16 21 C -0.14 -1.92 8.00 37.16 0.30 -1.62 16 22 C -0.14 -1.43 8.30 37.16 0.31 -1.12 16 23 C -0.14 -1.84 8.18 37.16 0.30 -1.54 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.06 0.91 7.60 -51.93 -0.39 0.52 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.03 6.18 -51.93 -0.32 0.70 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 38 H 0.06 0.89 7.12 -51.93 -0.37 0.52 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -28.42 333.22 -5.75 -34.18 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.51 Total: -2.30 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.09 Total: -5.75 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.95 Total: -42.49 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.10 Total: -4.36 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.42 -5.75 -34.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233763265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.026 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds