Wall clock time and date at job start Mon Mar 30 2020 07:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42904 * 109.47289 * 2 1 4 4 C 1.42892 * 114.00090 * 184.65619 * 3 2 1 5 5 H 1.09000 * 109.47339 * 327.75763 * 4 3 2 6 6 C 1.50700 * 109.47408 * 87.75590 * 4 3 2 7 7 N 1.29952 * 126.28547 * 44.97666 * 6 4 3 8 8 O 1.21299 * 110.24828 * 180.02562 * 7 6 4 9 9 C 1.33640 * 109.81444 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.55130 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47408 * 270.02306 * 10 9 8 12 12 H 1.08002 * 119.99783 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00371 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99911 * 359.73086 * 13 11 10 15 15 Si 1.86800 * 120.00473 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47279 * 90.00055 * 15 13 11 17 17 H 1.48492 * 109.47573 * 210.00630 * 15 13 11 18 18 H 1.48499 * 109.47015 * 330.00726 * 15 13 11 19 19 N 1.31125 * 106.89813 * 0.22477 * 9 8 7 20 20 C 1.52997 * 109.47287 * 207.75468 * 4 3 2 21 21 C 1.53000 * 109.47406 * 303.36439 * 20 4 3 22 22 C 1.53006 * 109.47084 * 63.36087 * 20 4 3 23 23 C 1.53001 * 109.47704 * 183.35957 * 20 4 3 24 24 H 1.09003 * 109.47223 * 300.00092 * 1 2 3 25 25 H 1.09003 * 109.47473 * 59.99993 * 1 2 3 26 26 H 1.09003 * 109.47430 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46931 * 240.00360 * 2 1 3 28 28 H 1.09003 * 109.47473 * 120.00007 * 2 1 3 29 29 H 1.09005 * 109.47331 * 150.02236 * 10 9 8 30 30 H 1.09007 * 109.47170 * 30.02531 * 10 9 8 31 31 H 0.97004 * 119.99942 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.47161 * 59.99445 * 21 20 4 33 33 H 1.08999 * 109.47025 * 179.97438 * 21 20 4 34 34 H 1.08998 * 109.46515 * 299.99922 * 21 20 4 35 35 H 1.09003 * 109.46640 * 55.26912 * 22 20 4 36 36 H 1.09002 * 109.47273 * 175.26882 * 22 20 4 37 37 H 1.08997 * 109.47244 * 295.27071 * 22 20 4 38 38 H 1.09004 * 109.46515 * 60.00028 * 23 20 4 39 39 H 1.08999 * 109.47537 * 179.97438 * 23 20 4 40 40 H 1.08999 * 109.47191 * 300.00437 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4267 1.4615 -0.1060 5 1 3.8974 0.6097 0.3848 6 6 3.8218 1.4847 -1.5601 7 7 3.2511 2.1757 -2.5012 8 8 3.8035 1.9759 -3.5625 9 6 4.8098 1.1128 -3.3940 10 6 5.7428 0.6026 -4.4618 11 6 5.1687 -0.6488 -5.0745 12 1 4.2226 -1.0358 -4.7258 13 6 5.8507 -1.2992 -6.0808 14 7 6.9997 -0.8245 -6.5098 15 14 5.1394 -2.8509 -6.8398 16 1 4.2806 -2.4879 -7.9955 17 1 6.2452 -3.7282 -7.3009 18 1 4.3269 -3.5701 -5.8260 19 7 4.8269 0.7906 -2.1231 20 6 3.8860 2.7561 0.5679 21 6 3.1617 3.9456 -0.0656 22 6 3.5597 2.6971 2.0616 23 6 5.3957 2.9203 0.3818 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 6.7134 0.3783 -4.0194 30 1 5.8623 1.3631 -5.2336 31 1 7.4797 -1.2823 -7.2176 32 1 2.0861 3.8287 0.0670 33 1 3.4885 4.8678 0.4148 34 1 3.3941 3.9876 -1.1297 35 1 4.0069 1.8030 2.4960 36 1 3.9613 3.5814 2.5564 37 1 2.4786 2.6648 2.1964 38 1 5.6281 2.9623 -0.6824 39 1 5.7228 3.8428 0.8615 40 1 5.9117 2.0729 0.8331 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233763265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:15 Heat of formation + Delta-G solvation = -20.957560 kcal Electronic energy + Delta-G solvation = -21317.004748 eV Core-core repulsion = 18133.966370 eV Total energy + Delta-G solvation = -3183.038379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.45046 -40.32448 -37.31553 -36.60060 -35.60616 -33.69036 -32.16030 -30.39082 -28.52660 -28.17214 -27.85787 -26.00349 -24.34588 -23.88899 -22.40859 -20.09826 -19.29818 -18.49625 -18.30158 -17.74750 -16.98240 -16.70663 -16.36565 -15.55306 -15.19580 -14.80379 -14.73628 -14.46970 -14.11036 -13.84093 -13.48744 -13.24337 -13.08359 -13.04570 -12.97108 -12.69959 -12.67926 -12.62811 -12.53467 -12.34845 -12.19602 -11.96893 -11.89402 -11.79565 -11.70392 -11.54566 -10.93333 -10.69096 -10.67987 -8.32674 -6.46218 0.25745 1.27309 1.42284 1.43130 1.53913 2.02699 2.31972 2.38296 2.73162 3.02329 3.30833 3.63274 3.70881 3.98303 4.03494 4.14046 4.24031 4.31943 4.36345 4.46647 4.65384 4.74557 4.77770 4.80186 4.85796 4.93654 4.94176 4.98840 5.00111 5.07328 5.10848 5.16807 5.20294 5.22848 5.40242 5.44541 5.56583 5.86151 5.99059 6.57801 7.22636 7.26842 8.78211 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.005097 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.516136 B = 5492.197988 C = 6227.830789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 O -0.369 6.369 4 C 0.194 3.806 5 H 0.095 0.905 6 C 0.146 3.854 7 N -0.390 5.390 8 O 0.047 5.953 9 C 0.226 3.774 10 C 0.111 3.889 11 C -0.544 4.544 12 H 0.050 0.950 13 C 0.023 3.977 14 N -0.915 5.915 15 Si 0.969 3.031 16 H -0.269 1.269 17 H -0.273 1.273 18 H -0.272 1.272 19 N -0.512 5.512 20 C -0.056 4.056 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.137 4.137 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.020 0.980 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.273 0.727 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.085 0.915 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 4.473 15.891 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 O -0.286 6.286 4 C 0.134 3.866 5 H 0.112 0.888 6 C -0.128 4.128 7 N -0.104 5.104 8 O -0.005 6.005 9 C 0.007 3.993 10 C 0.072 3.928 11 C -0.583 4.583 12 H 0.069 0.931 13 C -0.178 4.178 14 N -0.553 5.553 15 Si 0.793 3.207 16 H -0.194 1.194 17 H -0.198 1.198 18 H -0.197 1.197 19 N -0.248 5.248 20 C -0.057 4.057 21 C -0.192 4.192 22 C -0.185 4.185 23 C -0.194 4.194 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.039 0.961 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.104 0.896 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.110 4.924 16.270 18.834 hybrid contribution 0.200 -1.055 -1.267 1.661 sum -7.910 3.869 15.003 17.396 Atomic orbital electron populations 1.21713 0.91737 1.03505 1.02944 1.22782 0.97241 0.82927 1.00145 1.87966 1.19455 1.27761 1.93414 1.20531 0.82516 1.01118 0.82427 0.88762 1.26922 0.91620 0.93233 1.01018 1.74535 1.20205 1.23370 0.92324 1.85270 1.36320 1.49751 1.29193 1.29728 0.89186 0.86286 0.94099 1.17885 0.90759 0.96132 0.88001 1.20987 1.07051 1.09712 1.20504 0.93126 1.25719 0.94944 1.00862 0.96231 1.70005 1.15190 1.41295 1.28806 0.85377 0.78267 0.78397 0.78628 1.19392 1.19797 1.19663 1.71927 1.22125 1.25331 1.05377 1.20660 0.95758 0.91850 0.97442 1.21788 1.00634 0.97249 0.99543 1.21758 1.02493 1.03197 0.91057 1.21834 0.93703 1.03491 1.00378 0.90399 0.93404 0.89148 0.96111 0.90626 0.92632 0.93072 0.91765 0.92217 0.90724 0.94895 0.91656 0.90336 0.91714 0.95902 0.89595 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 10.28 71.98 0.74 -2.15 16 2 C 0.05 1.15 6.44 71.98 0.46 1.62 16 3 O -0.37 -10.80 8.72 -148.98 -1.30 -12.10 16 4 C 0.19 5.89 1.93 29.85 0.06 5.95 16 5 H 0.09 2.68 7.86 -2.39 -0.02 2.66 16 6 C 0.15 5.72 5.07 138.46 0.70 6.42 16 7 N -0.39 -16.48 10.49 -60.31 -0.63 -17.11 16 8 O 0.05 2.12 11.31 74.86 0.85 2.97 16 9 C 0.23 10.57 7.70 88.38 0.68 11.25 16 10 C 0.11 5.65 5.60 29.10 0.16 5.81 16 11 C -0.54 -29.85 9.09 25.60 0.23 -29.61 16 12 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 13 C 0.02 1.26 5.46 84.65 0.46 1.72 16 14 N -0.92 -51.08 13.29 21.45 0.28 -50.79 16 15 Si 0.97 42.33 29.54 68.60 2.03 44.35 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 19 N -0.51 -22.67 11.55 -303.20 -3.50 -26.18 16 20 C -0.06 -1.39 0.63 -52.18 -0.03 -1.42 16 21 C -0.13 -3.56 8.00 71.98 0.58 -2.98 16 22 C -0.13 -2.27 8.30 71.98 0.60 -1.68 16 23 C -0.14 -3.41 8.18 71.98 0.59 -2.82 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.02 0.63 8.05 -2.38 -0.02 0.62 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 2.93 8.14 -2.38 -0.02 2.91 16 30 H 0.05 2.62 8.14 -2.38 -0.02 2.60 16 31 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.06 1.61 7.60 -2.39 -0.02 1.59 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.03 1.06 6.18 -2.39 -0.01 1.04 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.16 7.91 -2.39 -0.02 1.15 16 38 H 0.02 0.70 7.12 -2.38 -0.02 0.69 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -61.31 333.22 3.96 -57.35 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.01 Total: 9.40 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 5.23 Total: -7.90 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -3.85 Total: -94.08 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.45 Total: -9.13 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -61.31 3.96 -57.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233763265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.393 kcal (2) G-P(sol) polarization free energy of solvation -61.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds