Wall clock time and date at job start Mon Mar 30 2020 07:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42901 * 109.47319 * 2 1 4 4 C 1.42894 * 114.00129 * 180.38194 * 3 2 1 5 5 H 1.09000 * 109.47219 * 327.71459 * 4 3 2 6 6 C 1.53007 * 109.47197 * 207.71848 * 4 3 2 7 7 C 1.52995 * 109.47009 * 65.29973 * 6 4 3 8 8 C 1.50702 * 109.47804 * 87.71716 * 4 3 2 9 9 N 1.29948 * 126.28451 * 44.68362 * 8 4 3 10 10 O 1.21299 * 110.24916 * 179.84727 * 9 8 4 11 11 C 1.33644 * 109.81375 * 0.42870 * 10 9 8 12 12 C 1.50693 * 126.55181 * 179.71709 * 11 10 9 13 13 C 1.52998 * 109.47284 * 270.02321 * 12 11 10 14 14 H 1.09004 * 109.46766 * 305.00138 * 13 12 11 15 15 C 1.52998 * 109.46938 * 65.00147 * 13 12 11 16 16 C 1.50701 * 109.47294 * 185.00056 * 13 12 11 17 17 H 1.08000 * 119.99742 * 0.02562 * 16 13 12 18 18 C 1.37874 * 120.00127 * 180.02562 * 16 13 12 19 19 N 1.31522 * 119.99954 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00025 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47535 * 59.99919 * 20 18 16 22 22 H 1.48504 * 109.47013 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46859 * 299.99609 * 20 18 16 24 24 N 1.31134 * 106.89480 * 359.73466 * 11 10 9 25 25 H 1.08993 * 109.47381 * 300.00473 * 1 2 3 26 26 H 1.09001 * 109.46880 * 60.00785 * 1 2 3 27 27 H 1.08999 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.09010 * 109.46976 * 119.99480 * 2 1 3 29 29 H 1.08993 * 109.47381 * 239.99527 * 2 1 3 30 30 H 1.08995 * 109.47125 * 185.30222 * 6 4 3 31 31 H 1.08999 * 109.46594 * 305.30072 * 6 4 3 32 32 H 1.08999 * 109.47311 * 54.82124 * 7 6 4 33 33 H 1.08999 * 109.47253 * 174.82123 * 7 6 4 34 34 H 1.08999 * 109.47382 * 294.82298 * 7 6 4 35 35 H 1.09002 * 109.47349 * 30.02762 * 12 11 10 36 36 H 1.09001 * 109.46984 * 150.02375 * 12 11 10 37 37 H 1.08997 * 109.47737 * 60.00210 * 15 13 12 38 38 H 1.09006 * 109.46974 * 180.02562 * 15 13 12 39 39 H 1.09004 * 109.46846 * 299.99730 * 15 13 12 40 40 H 0.96995 * 119.99859 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0087 5 1 3.8650 0.6215 0.5356 6 6 3.8426 2.7719 0.6626 7 6 3.4553 2.7311 2.1422 8 6 3.9272 1.4465 -1.4315 9 7 3.4216 2.1086 -2.4288 10 8 4.0503 1.8864 -3.4421 11 6 5.0412 1.0285 -3.1814 12 6 6.0465 0.4920 -4.1676 13 6 5.5075 -0.7941 -4.7969 14 1 5.2494 -1.5031 -4.0101 15 6 4.2607 -0.4737 -5.6237 16 6 6.5614 -1.3965 -5.6899 17 1 7.5199 -0.9107 -5.7975 18 6 6.3019 -2.5676 -6.3696 19 7 5.1347 -3.1595 -6.2381 20 14 7.6085 -3.3146 -7.4760 21 1 8.8181 -3.6264 -6.6730 22 1 7.0852 -4.5630 -8.0869 23 1 7.9610 -2.3487 -8.5474 24 7 4.9713 0.7423 -1.9036 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 4.9209 2.9031 0.5727 31 1 3.3335 3.6041 0.1765 32 1 3.8904 1.8466 2.6074 33 1 3.8298 3.6252 2.6406 34 1 2.3698 2.6924 2.2327 35 1 6.2211 1.2329 -4.9478 36 1 6.9832 0.2796 -3.6523 37 1 4.5187 0.2352 -6.4104 38 1 3.8764 -1.3901 -6.0717 39 1 3.4984 -0.0381 -4.9777 40 1 4.9523 -3.9836 -6.7160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233781866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:33 Heat of formation + Delta-G solvation = -4.845140 kcal Electronic energy + Delta-G solvation = -20788.754635 eV Core-core repulsion = 17606.414943 eV Total energy + Delta-G solvation = -3182.339692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.10639 -38.70038 -35.77963 -35.19232 -33.84837 -32.41546 -30.99274 -30.56669 -27.14755 -26.62653 -25.24187 -23.32353 -23.03933 -22.24508 -20.86557 -19.69133 -17.65406 -17.24378 -16.90928 -16.26320 -15.82714 -14.86358 -14.66069 -14.47813 -14.12588 -13.91379 -13.43987 -12.87556 -12.67026 -12.54865 -12.33731 -12.03782 -11.72677 -11.58845 -11.50569 -11.39447 -11.25933 -11.11870 -10.96114 -10.86533 -10.71994 -10.54953 -10.23303 -10.00207 -9.92711 -9.88334 -9.14390 -8.99186 -8.42504 -6.07443 -4.16102 1.64301 2.58976 3.28542 3.33521 3.34417 3.39181 3.42991 3.90714 4.37130 4.54643 4.79271 4.85125 4.98009 5.08974 5.13446 5.24074 5.31451 5.36162 5.51654 5.59117 5.67002 5.78315 5.83299 5.92671 5.97004 6.03647 6.11139 6.12265 6.18818 6.42170 6.52862 6.81402 7.02056 7.03584 7.18836 7.60765 7.81889 8.01422 8.27045 8.63570 8.86170 9.49579 10.98757 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027228 B = 0.004151 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.116012 B = 6744.356208 C = 7200.191693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.188 3.812 5 H 0.090 0.910 6 C -0.113 4.113 7 C -0.146 4.146 8 C 0.130 3.870 9 N -0.374 5.374 10 O 0.072 5.928 11 C 0.216 3.784 12 C -0.027 4.027 13 C 0.051 3.949 14 H 0.034 0.966 15 C -0.141 4.141 16 C -0.518 4.518 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 N -0.494 5.494 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.032 0.968 38 H 0.086 0.914 39 H 0.003 0.997 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 8.202 12.591 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 O -0.283 6.283 4 C 0.128 3.872 5 H 0.108 0.892 6 C -0.152 4.152 7 C -0.204 4.204 8 C -0.144 4.144 9 N -0.084 5.084 10 O 0.013 5.987 11 C -0.003 4.003 12 C -0.066 4.066 13 C 0.031 3.969 14 H 0.052 0.948 15 C -0.198 4.198 16 C -0.556 4.556 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.201 1.201 24 N -0.229 5.229 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.022 0.978 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.046 8.522 13.011 16.352 hybrid contribution 0.867 -0.826 -0.907 1.502 sum -4.179 7.696 12.104 14.940 Atomic orbital electron populations 1.21712 0.93405 1.02350 1.03032 1.22595 0.95832 0.83467 1.00503 1.87980 1.19115 1.26911 1.94312 1.20205 0.81705 1.00246 0.85039 0.89199 1.21581 1.01596 0.95681 0.96301 1.21702 1.02321 1.01776 0.94581 1.26385 0.93098 0.95326 0.99578 1.74559 1.17619 1.22320 0.93889 1.85318 1.33776 1.49018 1.30559 1.29542 0.90802 0.87525 0.92440 1.20846 0.92553 1.00197 0.93005 1.18733 0.94414 0.88705 0.95040 0.94806 1.21885 0.97116 1.01965 0.98882 1.20985 0.99482 1.08012 1.27166 0.92141 1.24948 0.95510 0.96727 0.96617 1.69885 1.21646 1.18497 1.42515 0.86590 0.81722 0.78520 0.80776 1.20162 1.21294 1.20139 1.71901 1.19251 1.24087 1.07661 0.91898 0.91777 0.90969 0.92939 0.93227 0.90249 0.90525 0.92629 0.92299 0.91826 0.89190 0.88238 0.94873 0.89538 0.97767 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.15 0.38 -1.19 16 2 C 0.05 0.67 6.45 37.15 0.24 0.91 16 3 O -0.37 -5.31 9.62 -35.23 -0.34 -5.65 16 4 C 0.19 2.69 2.65 -27.88 -0.07 2.62 16 5 H 0.09 1.19 7.82 -51.93 -0.41 0.78 16 6 C -0.11 -1.33 5.62 -26.73 -0.15 -1.48 16 7 C -0.15 -1.35 9.76 37.16 0.36 -0.99 16 8 C 0.13 2.33 6.99 -156.37 -1.09 1.24 16 9 N -0.37 -7.22 12.16 30.90 0.38 -6.84 16 10 O 0.07 1.40 10.75 18.10 0.19 1.59 16 11 C 0.22 4.21 6.92 -13.06 -0.09 4.12 16 12 C -0.03 -0.52 5.25 -27.89 -0.15 -0.67 16 13 C 0.05 1.21 2.29 -91.77 -0.21 1.00 16 14 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.14 -3.34 8.78 37.16 0.33 -3.01 16 16 C -0.52 -13.39 8.56 -34.44 -0.29 -13.69 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 20 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 N -0.49 -9.62 11.55 -9.87 -0.11 -9.73 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.57 8.09 -51.92 -0.42 0.15 16 29 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.61 7.97 -51.93 -0.41 0.19 16 35 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 36 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 39 H 0.00 0.08 6.93 -51.93 -0.36 -0.28 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -28.95 335.71 -6.59 -35.53 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.53 Total: -1.76 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.84 Total: -9.53 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.89 Total: -40.69 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.14 Total: -4.06 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.95 -6.59 -35.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233781866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.690 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds