Wall clock time and date at job start Mon Mar 30 2020 07:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42907 * 109.47045 * 2 1 4 4 C 1.42893 * 114.00233 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47131 * 60.00025 * 4 3 2 6 6 C 1.53004 * 109.47499 * 300.00156 * 4 3 2 7 7 C 1.53007 * 109.46836 * 300.00080 * 6 4 3 8 8 C 1.50706 * 109.47434 * 179.97438 * 4 3 2 9 9 N 1.29946 * 126.28426 * 125.02231 * 8 4 3 10 10 O 1.21309 * 110.24521 * 179.68915 * 9 8 4 11 11 C 1.33639 * 109.80928 * 0.46841 * 10 9 8 12 12 C 1.50706 * 126.55037 * 179.79972 * 11 10 9 13 13 C 1.52997 * 109.47238 * 269.69219 * 12 11 10 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99493 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47053 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46689 * 120.00372 * 18 16 14 21 21 H 1.48497 * 109.46761 * 240.00181 * 18 16 14 22 22 N 1.31128 * 106.90120 * 359.54177 * 11 10 9 23 23 H 1.09000 * 109.47432 * 299.99646 * 1 2 3 24 24 H 1.08997 * 109.47531 * 60.00484 * 1 2 3 25 25 H 1.09006 * 109.46643 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47432 * 240.00354 * 2 1 3 27 27 H 1.08997 * 109.47531 * 119.99516 * 2 1 3 28 28 H 1.09004 * 109.47413 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47126 * 300.00182 * 5 4 3 30 30 H 1.09001 * 109.47501 * 60.00101 * 5 4 3 31 31 H 1.08995 * 109.47145 * 59.99273 * 6 4 3 32 32 H 1.08991 * 109.47696 * 179.97438 * 6 4 3 33 33 H 1.08998 * 109.47101 * 299.99527 * 7 6 4 34 34 H 1.09001 * 109.46934 * 59.99458 * 7 6 4 35 35 H 1.08998 * 109.47027 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.46953 * 29.68831 * 12 11 10 37 37 H 1.09000 * 109.47318 * 149.68429 * 12 11 10 38 38 H 1.09001 * 109.46832 * 299.99686 * 13 12 11 39 39 H 1.09004 * 109.47261 * 59.99705 * 13 12 11 40 40 H 0.96999 * 119.99718 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4307 1.4602 0.0006 5 6 3.9967 0.7814 -1.2483 6 6 3.9957 0.7817 1.2501 7 6 3.4298 1.4606 2.4991 8 6 3.8193 2.9163 -0.0001 9 7 4.5981 3.5049 0.8577 10 8 4.7178 4.6794 0.5791 11 6 3.9972 4.9622 -0.5102 12 6 3.8721 6.3067 -1.1795 13 6 2.6880 7.0672 -0.5790 14 6 2.5634 8.4118 -1.2478 15 1 3.2588 8.6955 -2.0239 16 6 1.5608 9.2796 -0.8696 17 7 0.7137 8.9339 0.0750 18 14 1.4059 10.9461 -1.6992 19 1 2.4736 11.0916 -2.7209 20 1 0.0767 11.0519 -2.3529 21 1 1.5445 12.0197 -0.6827 22 7 3.4241 3.8452 -0.8888 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 5.0833 0.8671 -1.2477 29 1 3.7156 -0.2717 -1.2483 30 1 3.5943 1.2647 -2.1386 31 1 3.7147 -0.2714 1.2502 32 1 5.0823 0.8674 1.2504 33 1 3.7108 2.5137 2.4991 34 1 2.3432 1.3745 2.4986 35 1 3.8319 0.9770 3.3893 36 1 4.7875 6.8772 -1.0226 37 1 3.7099 6.1669 -2.2483 38 1 1.7726 6.4967 -0.7359 39 1 2.8504 7.2070 0.4898 40 1 0.0086 9.5445 0.3413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233781907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:48 Heat of formation + Delta-G solvation = 4.847276 kcal Electronic energy + Delta-G solvation = -20921.262210 eV Core-core repulsion = 17739.342813 eV Total energy + Delta-G solvation = -3181.919397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.13555 -39.42586 -35.55984 -34.79077 -33.55612 -32.12751 -31.22869 -30.00593 -29.96588 -25.80543 -25.04582 -23.52062 -23.13745 -22.27736 -21.06577 -19.69551 -17.68572 -17.58449 -16.42371 -16.07943 -15.96779 -15.45428 -14.53690 -14.40598 -13.86181 -13.77172 -13.40483 -13.16901 -12.69451 -12.50551 -12.43090 -12.30851 -11.96988 -11.92750 -11.76783 -11.55880 -11.29314 -11.17824 -10.99834 -10.95932 -10.81945 -10.60916 -10.51439 -10.10162 -9.98503 -9.57751 -9.28908 -9.12932 -8.42965 -6.06801 -4.11497 1.57337 2.55271 3.29639 3.32121 3.37588 3.40913 3.47887 3.93615 4.36506 4.42235 4.57206 4.86009 4.96808 5.06270 5.14501 5.19626 5.24507 5.29849 5.38755 5.43910 5.50865 5.62793 5.73133 5.79749 5.85133 5.97753 6.00502 6.04576 6.07482 6.16745 6.26823 6.35023 6.50429 6.65861 7.11923 7.52758 7.60496 7.89017 8.24367 8.60347 8.94119 9.53315 11.04532 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.004159 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.090319 B = 6730.200593 C = 7192.465090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.360 6.360 4 C 0.215 3.785 5 C -0.173 4.173 6 C -0.142 4.142 7 C -0.155 4.155 8 C 0.179 3.821 9 N -0.383 5.383 10 O 0.069 5.931 11 C 0.211 3.789 12 C -0.028 4.028 13 C 0.027 3.973 14 C -0.525 4.525 15 H 0.062 0.938 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 N -0.478 5.478 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.027 0.973 39 H 0.023 0.977 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 -18.222 0.251 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.278 6.278 4 C 0.173 3.827 5 C -0.231 4.231 6 C -0.180 4.180 7 C -0.212 4.212 8 C -0.095 4.095 9 N -0.095 5.095 10 O 0.012 5.988 11 C -0.008 4.008 12 C -0.067 4.067 13 C -0.011 4.011 14 C -0.563 4.563 15 H 0.080 0.920 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.211 5.211 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.275 -18.689 0.753 19.434 hybrid contribution -0.101 0.854 -0.348 0.928 sum 5.175 -17.835 0.405 18.575 Atomic orbital electron populations 1.21731 0.93480 1.02003 1.03582 1.22559 0.95686 0.84001 1.00179 1.88094 1.18468 1.26354 1.94930 1.19252 0.82569 0.85174 0.95655 1.22365 1.01858 1.00854 0.97982 1.22057 1.01644 0.99702 0.94564 1.21836 1.01135 1.02208 0.96067 1.24990 0.96584 0.97994 0.89884 1.74523 1.21895 0.91344 1.21704 1.85282 1.54131 1.20236 1.39193 1.29671 0.87176 0.98949 0.84978 1.20750 1.03812 0.82848 0.99266 1.19164 0.90886 0.94457 0.96602 1.21110 1.14285 0.99992 1.20931 0.91987 1.25014 0.95531 0.98669 0.95030 1.69982 1.17028 1.36489 1.29413 0.86459 0.78048 0.83668 0.79375 1.19562 1.20951 1.20956 1.71914 1.23744 0.98547 1.26929 0.91788 0.91557 0.91175 0.92978 0.93065 0.91297 0.91079 0.90380 0.90757 0.90400 0.91056 0.92410 0.92715 0.89115 0.88221 0.95443 0.95818 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.15 0.38 -1.12 16 2 C 0.05 0.56 5.86 37.15 0.22 0.78 16 3 O -0.36 -5.51 9.30 -35.23 -0.33 -5.84 16 4 C 0.21 3.09 0.78 -91.77 -0.07 3.01 16 5 C -0.17 -2.02 8.23 37.16 0.31 -1.71 16 6 C -0.14 -1.70 4.32 -26.73 -0.12 -1.82 16 7 C -0.16 -2.06 9.47 37.16 0.35 -1.71 16 8 C 0.18 3.22 6.31 -156.37 -0.99 2.23 16 9 N -0.38 -7.00 9.48 30.90 0.29 -6.71 16 10 O 0.07 1.31 11.31 18.11 0.20 1.51 16 11 C 0.21 4.14 7.77 -13.05 -0.10 4.04 16 12 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 13 C 0.03 0.68 4.95 -27.89 -0.14 0.54 16 14 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 N -0.48 -9.59 11.55 -9.87 -0.11 -9.70 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.48 6.42 -51.93 -0.33 0.15 16 27 H 0.05 0.48 6.41 -51.93 -0.33 0.15 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.64 6.54 -51.93 -0.34 0.30 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.70 6.54 -51.93 -0.34 0.36 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.14 5.70 -51.93 -0.30 0.84 16 34 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -31.08 329.02 -6.23 -37.31 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.23 Total: -2.49 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.73 Total: -9.37 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.92 Total: -42.12 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.12 Total: -4.32 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.08 -6.23 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233781907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.159 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds