Wall clock time and date at job start Mon Mar 30 2020 07:41:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.42907 * 109.47045 * 2 1
4 4 C 1.42893 * 114.00233 * 179.97438 * 3 2 1
5 5 C 1.52997 * 109.47131 * 60.00025 * 4 3 2
6 6 C 1.53004 * 109.47499 * 300.00156 * 4 3 2
7 7 C 1.53007 * 109.46836 * 300.00080 * 6 4 3
8 8 C 1.50706 * 109.47434 * 179.97438 * 4 3 2
9 9 N 1.29946 * 126.28426 * 125.02231 * 8 4 3
10 10 O 1.21309 * 110.24521 * 179.68915 * 9 8 4
11 11 C 1.33639 * 109.80928 * 0.46841 * 10 9 8
12 12 C 1.50706 * 126.55037 * 179.79972 * 11 10 9
13 13 C 1.52997 * 109.47238 * 269.69219 * 12 11 10
14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 11
15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12
16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 12
17 17 N 1.31509 * 119.99493 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 119.99862 * 180.02562 * 16 14 13
19 19 H 1.48496 * 109.47053 * 359.97438 * 18 16 14
20 20 H 1.48498 * 109.46689 * 120.00372 * 18 16 14
21 21 H 1.48497 * 109.46761 * 240.00181 * 18 16 14
22 22 N 1.31128 * 106.90120 * 359.54177 * 11 10 9
23 23 H 1.09000 * 109.47432 * 299.99646 * 1 2 3
24 24 H 1.08997 * 109.47531 * 60.00484 * 1 2 3
25 25 H 1.09006 * 109.46643 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47432 * 240.00354 * 2 1 3
27 27 H 1.08997 * 109.47531 * 119.99516 * 2 1 3
28 28 H 1.09004 * 109.47413 * 180.02562 * 5 4 3
29 29 H 1.08998 * 109.47126 * 300.00182 * 5 4 3
30 30 H 1.09001 * 109.47501 * 60.00101 * 5 4 3
31 31 H 1.08995 * 109.47145 * 59.99273 * 6 4 3
32 32 H 1.08991 * 109.47696 * 179.97438 * 6 4 3
33 33 H 1.08998 * 109.47101 * 299.99527 * 7 6 4
34 34 H 1.09001 * 109.46934 * 59.99458 * 7 6 4
35 35 H 1.08998 * 109.47027 * 179.97438 * 7 6 4
36 36 H 1.09001 * 109.46953 * 29.68831 * 12 11 10
37 37 H 1.09000 * 109.47318 * 149.68429 * 12 11 10
38 38 H 1.09001 * 109.46832 * 299.99686 * 13 12 11
39 39 H 1.09004 * 109.47261 * 59.99705 * 13 12 11
40 40 H 0.96999 * 119.99718 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4307 1.4602 0.0006
5 6 3.9967 0.7814 -1.2483
6 6 3.9957 0.7817 1.2501
7 6 3.4298 1.4606 2.4991
8 6 3.8193 2.9163 -0.0001
9 7 4.5981 3.5049 0.8577
10 8 4.7178 4.6794 0.5791
11 6 3.9972 4.9622 -0.5102
12 6 3.8721 6.3067 -1.1795
13 6 2.6880 7.0672 -0.5790
14 6 2.5634 8.4118 -1.2478
15 1 3.2588 8.6955 -2.0239
16 6 1.5608 9.2796 -0.8696
17 7 0.7137 8.9339 0.0750
18 14 1.4059 10.9461 -1.6992
19 1 2.4736 11.0916 -2.7209
20 1 0.0767 11.0519 -2.3529
21 1 1.5445 12.0197 -0.6827
22 7 3.4241 3.8452 -0.8888
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5137 -0.8900
25 1 -0.3633 -1.0278 0.0005
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5137 0.8900
28 1 5.0833 0.8671 -1.2477
29 1 3.7156 -0.2717 -1.2483
30 1 3.5943 1.2647 -2.1386
31 1 3.7147 -0.2714 1.2502
32 1 5.0823 0.8674 1.2504
33 1 3.7108 2.5137 2.4991
34 1 2.3432 1.3745 2.4986
35 1 3.8319 0.9770 3.3893
36 1 4.7875 6.8772 -1.0226
37 1 3.7099 6.1669 -2.2483
38 1 1.7726 6.4967 -0.7359
39 1 2.8504 7.2070 0.4898
40 1 0.0086 9.5445 0.3413
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000233781907.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:41:48
Heat of formation + Delta-G solvation = -15.637508 kcal
Electronic energy + Delta-G solvation = -20922.150497 eV
Core-core repulsion = 17739.342813 eV
Total energy + Delta-G solvation = -3182.807684 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.157 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-46.60334 -40.45704 -37.01855 -36.34405 -35.07413 -33.81196 -32.14095 -31.69335
-30.92740 -27.72977 -26.21390 -24.66745 -24.48923 -23.69478 -22.56752 -20.91401
-19.11758 -19.01213 -18.41389 -17.29980 -16.91263 -16.54797 -16.48660 -15.80512
-15.28126 -14.95139 -14.56007 -14.40173 -14.27443 -13.74499 -13.51560 -13.50138
-13.27069 -13.03535 -12.86630 -12.85894 -12.77982 -12.75476 -12.50222 -12.23407
-12.05699 -12.01615 -11.93488 -11.79489 -11.61341 -11.31832 -10.75796 -10.58011
-10.51090 -8.20282 -6.32765 0.08037 1.11739 1.45977 1.46263 1.59838
1.83752 2.30674 2.44077 2.72027 3.15230 3.22195 3.53995 3.75623
4.03003 4.12410 4.22208 4.27703 4.34274 4.39651 4.46037 4.51068
4.53032 4.54700 4.66746 4.76775 4.84646 4.89226 4.93168 4.95290
4.99368 5.09581 5.13692 5.24516 5.34077 5.43034 5.52512 5.77592
6.12781 6.18688 6.83442 7.11298 7.37681 8.92667
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.024554 B = 0.004159 C = 0.003892
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1140.090319 B = 6730.200593 C = 7192.465090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.045 3.955
3 O -0.395 6.395
4 C 0.206 3.794
5 C -0.167 4.167
6 C -0.135 4.135
7 C -0.154 4.154
8 C 0.176 3.824
9 N -0.385 5.385
10 O 0.061 5.939
11 C 0.204 3.796
12 C -0.013 4.013
13 C 0.034 3.966
14 C -0.537 4.537
15 H 0.080 0.920
16 C -0.001 4.001
17 N -0.937 5.937
18 Si 0.972 3.028
19 H -0.253 1.253
20 H -0.283 1.283
21 H -0.281 1.281
22 N -0.499 5.499
23 H 0.049 0.951
24 H 0.050 0.950
25 H 0.101 0.899
26 H 0.072 0.928
27 H 0.070 0.930
28 H 0.076 0.924
29 H 0.104 0.896
30 H 0.059 0.941
31 H 0.108 0.892
32 H 0.082 0.918
33 H 0.038 0.962
34 H 0.048 0.952
35 H 0.076 0.924
36 H 0.118 0.882
37 H 0.113 0.887
38 H -0.011 1.011
39 H -0.004 1.004
40 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.515 -19.467 -0.664 20.539
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.031 4.031
3 O -0.315 6.315
4 C 0.165 3.835
5 C -0.224 4.224
6 C -0.173 4.173
7 C -0.212 4.212
8 C -0.097 4.097
9 N -0.097 5.097
10 O 0.006 5.994
11 C -0.015 4.015
12 C -0.052 4.052
13 C -0.005 4.005
14 C -0.575 4.575
15 H 0.098 0.902
16 C -0.199 4.199
17 N -0.577 5.577
18 Si 0.796 3.204
19 H -0.176 1.176
20 H -0.209 1.209
21 H -0.207 1.207
22 N -0.233 5.233
23 H 0.068 0.932
24 H 0.069 0.931
25 H 0.119 0.881
26 H 0.090 0.910
27 H 0.088 0.912
28 H 0.095 0.905
29 H 0.122 0.878
30 H 0.078 0.922
31 H 0.127 0.873
32 H 0.101 0.899
33 H 0.057 0.943
34 H 0.067 0.933
35 H 0.095 0.905
36 H 0.136 0.864
37 H 0.131 0.869
38 H 0.008 0.992
39 H 0.014 0.986
40 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 6.370 -19.936 -0.167 20.930
hybrid contribution -0.481 1.151 -0.008 1.248
sum 5.889 -18.785 -0.176 19.687
Atomic orbital electron populations
1.21779 0.93304 1.03567 1.02132 1.22849 0.95907 0.82359 1.01960
1.88051 1.18948 1.29228 1.95287 1.19618 0.82753 0.83108 0.98008
1.22347 1.02107 1.02256 0.95736 1.22074 1.01668 1.01082 0.92499
1.21807 1.00748 1.00577 0.98028 1.25820 0.95627 0.99530 0.88736
1.74529 1.22479 0.91013 1.21668 1.85264 1.54275 1.20843 1.39022
1.29578 0.87660 0.98994 0.85264 1.20514 1.02520 0.82677 0.99443
1.18943 0.91647 0.94537 0.95324 1.21603 1.14381 1.00499 1.21026
0.90189 1.26035 0.95180 1.03079 0.95611 1.70136 1.17992 1.38207
1.31354 0.85293 0.78336 0.78264 0.78512 1.17611 1.20887 1.20651
1.71915 1.24032 0.99268 1.28097 0.93194 0.93051 0.88073 0.91034
0.91171 0.90498 0.87787 0.92160 0.87340 0.89906 0.94319 0.93285
0.90513 0.86390 0.86863 0.99226 0.98555 0.92781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.81 10.28 71.98 0.74 -2.07 16
2 C 0.04 0.87 5.86 71.98 0.42 1.29 16
3 O -0.40 -11.83 9.30 -148.98 -1.38 -13.22 16
4 C 0.21 5.67 0.78 -11.54 -0.01 5.66 16
5 C -0.17 -3.54 8.23 71.98 0.59 -2.94 16
6 C -0.14 -2.94 4.32 30.60 0.13 -2.81 16
7 C -0.15 -3.95 9.47 71.98 0.68 -3.27 16
8 C 0.18 6.36 6.31 138.47 0.87 7.23 16
9 N -0.38 -14.16 9.48 -60.32 -0.57 -14.73 16
10 O 0.06 2.36 11.31 74.86 0.85 3.20 16
11 C 0.20 8.14 7.77 88.38 0.69 8.82 16
12 C -0.01 -0.50 5.78 29.85 0.17 -0.33 16
13 C 0.03 1.76 4.95 29.85 0.15 1.90 16
14 C -0.54 -29.10 9.11 25.60 0.23 -28.87 16
15 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16
16 C 0.00 -0.07 5.46 84.66 0.46 0.39 16
17 N -0.94 -57.15 13.29 21.45 0.28 -56.87 16
18 Si 0.97 43.10 29.54 68.60 2.03 45.13 16
19 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16
20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16
21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16
22 N -0.50 -20.34 11.55 -303.20 -3.50 -23.84 16
23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16
24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
25 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16
26 H 0.07 1.10 6.42 -2.39 -0.02 1.08 16
27 H 0.07 1.08 6.41 -2.39 -0.02 1.07 16
28 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16
29 H 0.10 1.48 6.54 -2.39 -0.02 1.47 16
30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
31 H 0.11 1.62 6.54 -2.39 -0.02 1.60 16
32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
33 H 0.04 1.24 5.70 -2.39 -0.01 1.22 16
34 H 0.05 1.31 7.68 -2.39 -0.02 1.29 16
35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
36 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16
37 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16
38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16
39 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16
40 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16
Total: -1.00 -69.42 329.02 3.85 -65.57
By element:
Atomic # 1 Polarization: 8.73 SS G_CDS: 1.02 Total: 9.75 kcal
Atomic # 6 Polarization: -20.13 SS G_CDS: 5.14 Total: -14.99 kcal
Atomic # 7 Polarization: -91.65 SS G_CDS: -3.79 Total: -95.44 kcal
Atomic # 8 Polarization: -9.47 SS G_CDS: -0.54 Total: -10.01 kcal
Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal
Total: -69.42 3.85 -65.57 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000233781907.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.929 kcal
(2) G-P(sol) polarization free energy of solvation -69.421 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.492 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.638 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds