Wall clock time and date at job start Mon Mar 30 2020 07:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42907 * 109.47045 * 2 1 4 4 C 1.42893 * 114.00233 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47131 * 60.00025 * 4 3 2 6 6 C 1.53004 * 109.47499 * 300.00156 * 4 3 2 7 7 C 1.53007 * 109.46836 * 300.00080 * 6 4 3 8 8 C 1.50706 * 109.47434 * 179.97438 * 4 3 2 9 9 N 1.29946 * 126.28426 * 125.02231 * 8 4 3 10 10 O 1.21309 * 110.24521 * 179.68915 * 9 8 4 11 11 C 1.33639 * 109.80928 * 0.46841 * 10 9 8 12 12 C 1.50706 * 126.55037 * 179.79972 * 11 10 9 13 13 C 1.52997 * 109.47238 * 269.69219 * 12 11 10 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99493 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99862 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47053 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46689 * 120.00372 * 18 16 14 21 21 H 1.48497 * 109.46761 * 240.00181 * 18 16 14 22 22 N 1.31128 * 106.90120 * 359.54177 * 11 10 9 23 23 H 1.09000 * 109.47432 * 299.99646 * 1 2 3 24 24 H 1.08997 * 109.47531 * 60.00484 * 1 2 3 25 25 H 1.09006 * 109.46643 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47432 * 240.00354 * 2 1 3 27 27 H 1.08997 * 109.47531 * 119.99516 * 2 1 3 28 28 H 1.09004 * 109.47413 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47126 * 300.00182 * 5 4 3 30 30 H 1.09001 * 109.47501 * 60.00101 * 5 4 3 31 31 H 1.08995 * 109.47145 * 59.99273 * 6 4 3 32 32 H 1.08991 * 109.47696 * 179.97438 * 6 4 3 33 33 H 1.08998 * 109.47101 * 299.99527 * 7 6 4 34 34 H 1.09001 * 109.46934 * 59.99458 * 7 6 4 35 35 H 1.08998 * 109.47027 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.46953 * 29.68831 * 12 11 10 37 37 H 1.09000 * 109.47318 * 149.68429 * 12 11 10 38 38 H 1.09001 * 109.46832 * 299.99686 * 13 12 11 39 39 H 1.09004 * 109.47261 * 59.99705 * 13 12 11 40 40 H 0.96999 * 119.99718 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4307 1.4602 0.0006 5 6 3.9967 0.7814 -1.2483 6 6 3.9957 0.7817 1.2501 7 6 3.4298 1.4606 2.4991 8 6 3.8193 2.9163 -0.0001 9 7 4.5981 3.5049 0.8577 10 8 4.7178 4.6794 0.5791 11 6 3.9972 4.9622 -0.5102 12 6 3.8721 6.3067 -1.1795 13 6 2.6880 7.0672 -0.5790 14 6 2.5634 8.4118 -1.2478 15 1 3.2588 8.6955 -2.0239 16 6 1.5608 9.2796 -0.8696 17 7 0.7137 8.9339 0.0750 18 14 1.4059 10.9461 -1.6992 19 1 2.4736 11.0916 -2.7209 20 1 0.0767 11.0519 -2.3529 21 1 1.5445 12.0197 -0.6827 22 7 3.4241 3.8452 -0.8888 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 5.0833 0.8671 -1.2477 29 1 3.7156 -0.2717 -1.2483 30 1 3.5943 1.2647 -2.1386 31 1 3.7147 -0.2714 1.2502 32 1 5.0823 0.8674 1.2504 33 1 3.7108 2.5137 2.4991 34 1 2.3432 1.3745 2.4986 35 1 3.8319 0.9770 3.3893 36 1 4.7875 6.8772 -1.0226 37 1 3.7099 6.1669 -2.2483 38 1 1.7726 6.4967 -0.7359 39 1 2.8504 7.2070 0.4898 40 1 0.0086 9.5445 0.3413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233781907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:48 Heat of formation + Delta-G solvation = -15.637508 kcal Electronic energy + Delta-G solvation = -20922.150497 eV Core-core repulsion = 17739.342813 eV Total energy + Delta-G solvation = -3182.807684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.60334 -40.45704 -37.01855 -36.34405 -35.07413 -33.81196 -32.14095 -31.69335 -30.92740 -27.72977 -26.21390 -24.66745 -24.48923 -23.69478 -22.56752 -20.91401 -19.11758 -19.01213 -18.41389 -17.29980 -16.91263 -16.54797 -16.48660 -15.80512 -15.28126 -14.95139 -14.56007 -14.40173 -14.27443 -13.74499 -13.51560 -13.50138 -13.27069 -13.03535 -12.86630 -12.85894 -12.77982 -12.75476 -12.50222 -12.23407 -12.05699 -12.01615 -11.93488 -11.79489 -11.61341 -11.31832 -10.75796 -10.58011 -10.51090 -8.20282 -6.32765 0.08037 1.11739 1.45977 1.46263 1.59838 1.83752 2.30674 2.44077 2.72027 3.15230 3.22195 3.53995 3.75623 4.03003 4.12410 4.22208 4.27703 4.34274 4.39651 4.46037 4.51068 4.53032 4.54700 4.66746 4.76775 4.84646 4.89226 4.93168 4.95290 4.99368 5.09581 5.13692 5.24516 5.34077 5.43034 5.52512 5.77592 6.12781 6.18688 6.83442 7.11298 7.37681 8.92667 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.004159 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.090319 B = 6730.200593 C = 7192.465090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.395 6.395 4 C 0.206 3.794 5 C -0.167 4.167 6 C -0.135 4.135 7 C -0.154 4.154 8 C 0.176 3.824 9 N -0.385 5.385 10 O 0.061 5.939 11 C 0.204 3.796 12 C -0.013 4.013 13 C 0.034 3.966 14 C -0.537 4.537 15 H 0.080 0.920 16 C -0.001 4.001 17 N -0.937 5.937 18 Si 0.972 3.028 19 H -0.253 1.253 20 H -0.283 1.283 21 H -0.281 1.281 22 N -0.499 5.499 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.113 0.887 38 H -0.011 1.011 39 H -0.004 1.004 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 -19.467 -0.664 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 O -0.315 6.315 4 C 0.165 3.835 5 C -0.224 4.224 6 C -0.173 4.173 7 C -0.212 4.212 8 C -0.097 4.097 9 N -0.097 5.097 10 O 0.006 5.994 11 C -0.015 4.015 12 C -0.052 4.052 13 C -0.005 4.005 14 C -0.575 4.575 15 H 0.098 0.902 16 C -0.199 4.199 17 N -0.577 5.577 18 Si 0.796 3.204 19 H -0.176 1.176 20 H -0.209 1.209 21 H -0.207 1.207 22 N -0.233 5.233 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.008 0.992 39 H 0.014 0.986 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.370 -19.936 -0.167 20.930 hybrid contribution -0.481 1.151 -0.008 1.248 sum 5.889 -18.785 -0.176 19.687 Atomic orbital electron populations 1.21779 0.93304 1.03567 1.02132 1.22849 0.95907 0.82359 1.01960 1.88051 1.18948 1.29228 1.95287 1.19618 0.82753 0.83108 0.98008 1.22347 1.02107 1.02256 0.95736 1.22074 1.01668 1.01082 0.92499 1.21807 1.00748 1.00577 0.98028 1.25820 0.95627 0.99530 0.88736 1.74529 1.22479 0.91013 1.21668 1.85264 1.54275 1.20843 1.39022 1.29578 0.87660 0.98994 0.85264 1.20514 1.02520 0.82677 0.99443 1.18943 0.91647 0.94537 0.95324 1.21603 1.14381 1.00499 1.21026 0.90189 1.26035 0.95180 1.03079 0.95611 1.70136 1.17992 1.38207 1.31354 0.85293 0.78336 0.78264 0.78512 1.17611 1.20887 1.20651 1.71915 1.24032 0.99268 1.28097 0.93194 0.93051 0.88073 0.91034 0.91171 0.90498 0.87787 0.92160 0.87340 0.89906 0.94319 0.93285 0.90513 0.86390 0.86863 0.99226 0.98555 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 10.28 71.98 0.74 -2.07 16 2 C 0.04 0.87 5.86 71.98 0.42 1.29 16 3 O -0.40 -11.83 9.30 -148.98 -1.38 -13.22 16 4 C 0.21 5.67 0.78 -11.54 -0.01 5.66 16 5 C -0.17 -3.54 8.23 71.98 0.59 -2.94 16 6 C -0.14 -2.94 4.32 30.60 0.13 -2.81 16 7 C -0.15 -3.95 9.47 71.98 0.68 -3.27 16 8 C 0.18 6.36 6.31 138.47 0.87 7.23 16 9 N -0.38 -14.16 9.48 -60.32 -0.57 -14.73 16 10 O 0.06 2.36 11.31 74.86 0.85 3.20 16 11 C 0.20 8.14 7.77 88.38 0.69 8.82 16 12 C -0.01 -0.50 5.78 29.85 0.17 -0.33 16 13 C 0.03 1.76 4.95 29.85 0.15 1.90 16 14 C -0.54 -29.10 9.11 25.60 0.23 -28.87 16 15 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 16 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 17 N -0.94 -57.15 13.29 21.45 0.28 -56.87 16 18 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 19 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 N -0.50 -20.34 11.55 -303.20 -3.50 -23.84 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.07 1.10 6.42 -2.39 -0.02 1.08 16 27 H 0.07 1.08 6.41 -2.39 -0.02 1.07 16 28 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.10 1.48 6.54 -2.39 -0.02 1.47 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 1.62 6.54 -2.39 -0.02 1.60 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.24 5.70 -2.39 -0.01 1.22 16 34 H 0.05 1.31 7.68 -2.39 -0.02 1.29 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 37 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 40 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -69.42 329.02 3.85 -65.57 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.02 Total: 9.75 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 5.14 Total: -14.99 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -3.79 Total: -95.44 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.54 Total: -10.01 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -69.42 3.85 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233781907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.929 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds