Wall clock time and date at job start Mon Mar 30 2020 07:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46750 * 2 1 4 4 C 1.42901 * 113.99867 * 176.23468 * 3 2 1 5 5 H 1.08999 * 109.47610 * 326.54658 * 4 3 2 6 6 C 1.52999 * 109.47099 * 206.54135 * 4 3 2 7 7 C 1.53002 * 109.47075 * 65.32274 * 6 4 3 8 8 C 1.50701 * 109.47229 * 86.54580 * 4 3 2 9 9 N 1.29955 * 126.28440 * 45.01994 * 8 4 3 10 10 O 1.21306 * 110.24537 * 179.97438 * 9 8 4 11 11 C 1.33638 * 109.81394 * 0.02562 * 10 9 8 12 12 C 1.50700 * 126.54990 * 179.97438 * 11 10 9 13 13 C 1.52993 * 109.47356 * 269.97794 * 12 11 10 14 14 H 1.08999 * 109.47354 * 54.99682 * 13 12 11 15 15 C 1.53002 * 109.47116 * 295.00005 * 13 12 11 16 16 C 1.50709 * 109.47261 * 175.00006 * 13 12 11 17 17 H 1.08000 * 119.99372 * 35.09910 * 16 13 12 18 18 C 1.37876 * 119.99681 * 215.10043 * 16 13 12 19 19 N 1.31514 * 119.99237 * 178.70991 * 18 16 13 20 20 Si 1.86793 * 120.00466 * 358.71076 * 18 16 13 21 21 H 1.48505 * 109.47203 * 84.70032 * 20 18 16 22 22 H 1.48499 * 109.47384 * 204.69984 * 20 18 16 23 23 H 1.48501 * 109.47442 * 324.70216 * 20 18 16 24 24 N 1.31130 * 106.89957 * 359.76935 * 11 10 9 25 25 H 1.08999 * 109.47379 * 60.00082 * 1 2 3 26 26 H 1.09006 * 109.46476 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47140 * 299.99331 * 1 2 3 28 28 H 1.08993 * 109.47477 * 120.00375 * 2 1 3 29 29 H 1.09008 * 109.46963 * 240.00716 * 2 1 3 30 30 H 1.09003 * 109.47433 * 185.32062 * 6 4 3 31 31 H 1.09002 * 109.47458 * 305.32354 * 6 4 3 32 32 H 1.08997 * 109.47152 * 182.77056 * 7 6 4 33 33 H 1.09002 * 109.47107 * 302.77608 * 7 6 4 34 34 H 1.08997 * 109.47123 * 62.77393 * 7 6 4 35 35 H 1.08997 * 109.47057 * 29.97900 * 12 11 10 36 36 H 1.09005 * 109.47352 * 149.97655 * 12 11 10 37 37 H 1.08999 * 109.46855 * 63.24144 * 15 13 12 38 38 H 1.09002 * 109.46836 * 183.23863 * 15 13 12 39 39 H 1.09000 * 109.47255 * 303.23611 * 15 13 12 40 40 H 0.97008 * 119.99945 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4281 1.4611 0.0857 5 1 3.8217 0.6480 0.6957 6 6 3.7948 2.8019 0.7250 7 6 3.3056 2.8265 2.1745 8 6 4.0225 1.3848 -1.2970 9 7 3.5925 2.0062 -2.3543 10 8 4.2872 1.7362 -3.3114 11 6 5.2553 0.8911 -2.9445 12 6 6.3260 0.3126 -3.8333 13 6 5.8297 -1.0007 -4.4412 14 1 4.8842 -0.8287 -4.9554 15 6 5.6255 -2.0321 -3.3298 16 6 6.8494 -1.5164 -5.4239 17 1 7.9028 -1.3710 -5.2352 18 6 6.4374 -2.1737 -6.5637 19 7 7.3261 -2.6014 -7.4336 20 14 4.6170 -2.4569 -6.8722 21 1 4.0314 -1.2546 -7.5179 22 1 4.4428 -3.6318 -7.7636 23 1 3.9293 -2.7094 -5.5805 24 7 5.0981 0.6648 -1.6625 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 4.8770 2.9304 0.7046 31 1 3.3223 3.6112 0.1684 32 1 3.5230 3.7996 2.6149 33 1 2.2304 2.6489 2.1982 34 1 3.8149 2.0485 2.7431 35 1 6.5561 1.0184 -4.6314 36 1 7.2241 0.1242 -3.2449 37 1 4.8467 -1.6850 -2.6507 38 1 5.3273 -2.9845 -3.7682 39 1 6.5569 -2.1617 -2.7786 40 1 7.0363 -3.0635 -8.2358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233781963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:37 Heat of formation + Delta-G solvation = -3.648710 kcal Electronic energy + Delta-G solvation = -20891.585343 eV Core-core repulsion = 17709.297533 eV Total energy + Delta-G solvation = -3182.287811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.22883 -38.79812 -36.02730 -35.24454 -33.88711 -32.41968 -31.20616 -30.94134 -27.31163 -27.01196 -25.25815 -23.39948 -23.12231 -22.32000 -20.97417 -19.56354 -17.77757 -17.32582 -17.14258 -16.80224 -15.93474 -14.95649 -14.58934 -14.49156 -14.31568 -14.16103 -13.23879 -12.87358 -12.80363 -12.62525 -12.42672 -12.38795 -12.30661 -11.72751 -11.66350 -11.53956 -11.47664 -11.20811 -11.06744 -10.89665 -10.70542 -10.64887 -10.50516 -10.04448 -9.92768 -9.84459 -9.34931 -9.16654 -8.64860 -6.17650 -4.19062 1.51439 2.47038 3.23887 3.26790 3.31758 3.32996 3.35654 3.80027 4.34341 4.42860 4.71793 4.76877 4.87724 5.01767 5.04287 5.15446 5.21122 5.28515 5.40582 5.50394 5.58332 5.72563 5.73263 5.79488 5.85826 5.93187 5.95485 6.03469 6.06461 6.26950 6.32140 6.48070 6.66485 6.77489 6.94249 7.07569 7.30091 7.61184 8.37426 8.51266 8.85414 9.44098 10.94950 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025426 B = 0.004721 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.986479 B = 5929.559071 C = 6508.237632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.188 3.812 5 H 0.091 0.909 6 C -0.113 4.113 7 C -0.147 4.147 8 C 0.130 3.870 9 N -0.373 5.373 10 O 0.070 5.930 11 C 0.208 3.792 12 C -0.021 4.021 13 C 0.017 3.983 14 H 0.034 0.966 15 C -0.138 4.138 16 C -0.515 4.515 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.895 5.895 20 Si 0.873 3.127 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.266 1.266 24 N -0.489 5.489 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.021 0.979 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.074 7.528 15.957 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 O -0.283 6.283 4 C 0.128 3.872 5 H 0.108 0.892 6 C -0.152 4.152 7 C -0.205 4.205 8 C -0.144 4.144 9 N -0.083 5.083 10 O 0.012 5.988 11 C -0.011 4.011 12 C -0.060 4.060 13 C -0.003 4.003 14 H 0.052 0.948 15 C -0.196 4.196 16 C -0.552 4.552 17 H 0.097 0.903 18 C -0.126 4.126 19 N -0.532 5.532 20 Si 0.700 3.300 21 H -0.199 1.199 22 H -0.214 1.214 23 H -0.190 1.190 24 N -0.224 5.224 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.793 7.940 16.187 20.517 hybrid contribution -0.672 -0.613 -0.549 1.062 sum -10.465 7.327 15.638 20.193 Atomic orbital electron populations 1.21720 0.93376 1.02348 1.03096 1.22591 0.95823 0.83494 1.00443 1.87988 1.19240 1.26840 1.94213 1.20210 0.81006 1.00203 0.85787 0.89159 1.21581 1.01648 0.95184 0.96738 1.21712 1.02111 1.01861 0.94800 1.26436 0.93585 0.95472 0.98920 1.74589 1.16079 1.21748 0.95857 1.85314 1.32186 1.48743 1.32589 1.29668 0.92179 0.88284 0.90935 1.20811 0.91010 0.98915 0.95289 1.19153 0.97430 0.89217 0.94495 0.94797 1.22036 0.99524 0.99985 0.98062 1.20815 0.93864 1.36862 1.03707 0.90284 1.24991 0.97297 0.94806 0.95532 1.69881 1.33750 1.38623 1.10960 0.86933 0.86230 0.78252 0.78597 1.19907 1.21375 1.19024 1.71927 1.16779 1.23458 1.10187 0.91780 0.90989 0.91814 0.92886 0.93417 0.90191 0.90522 0.92228 0.91743 0.92631 0.88259 0.87878 0.96033 0.93503 0.93183 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.05 0.63 6.48 37.16 0.24 0.87 16 3 O -0.37 -4.98 9.49 -35.23 -0.33 -5.32 16 4 C 0.19 2.51 2.65 -27.88 -0.07 2.44 16 5 H 0.09 1.10 7.78 -51.93 -0.40 0.69 16 6 C -0.11 -1.26 5.62 -26.73 -0.15 -1.41 16 7 C -0.15 -1.28 9.84 37.16 0.37 -0.91 16 8 C 0.13 2.18 6.98 -156.36 -1.09 1.09 16 9 N -0.37 -6.83 12.16 30.91 0.38 -6.46 16 10 O 0.07 1.30 11.31 18.11 0.20 1.50 16 11 C 0.21 3.79 6.97 -13.05 -0.09 3.70 16 12 C -0.02 -0.38 5.30 -27.89 -0.15 -0.53 16 13 C 0.02 0.38 1.89 -91.77 -0.17 0.21 16 14 H 0.03 0.77 5.58 -51.93 -0.29 0.48 16 15 C -0.14 -2.89 8.87 37.16 0.33 -2.56 16 16 C -0.51 -13.40 8.87 -34.44 -0.31 -13.70 16 17 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 18 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -26.18 13.96 55.43 0.77 -25.40 16 20 Si 0.87 20.92 26.52 -169.99 -4.51 16.41 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.20 6.71 56.52 0.38 -5.82 16 24 N -0.49 -8.75 10.99 -9.86 -0.11 -8.85 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.53 8.00 -51.93 -0.42 0.12 16 29 H 0.05 0.65 8.12 -51.92 -0.42 0.23 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.58 7.76 -51.93 -0.40 0.18 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.02 0.42 7.04 -51.93 -0.37 0.05 16 38 H 0.05 1.01 7.51 -51.93 -0.39 0.62 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -29.59 334.13 -5.87 -35.46 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.50 Total: -2.50 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -0.81 Total: -9.88 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 1.04 Total: -40.72 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.13 Total: -3.81 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.51 Total: 16.41 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.59 -5.87 -35.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233781963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.812 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds