Wall clock time and date at job start Mon Mar 30 2020 07:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46750 * 2 1 4 4 C 1.42901 * 113.99867 * 176.23468 * 3 2 1 5 5 H 1.08999 * 109.47610 * 326.54658 * 4 3 2 6 6 C 1.52999 * 109.47099 * 206.54135 * 4 3 2 7 7 C 1.53002 * 109.47075 * 65.32274 * 6 4 3 8 8 C 1.50701 * 109.47229 * 86.54580 * 4 3 2 9 9 N 1.29955 * 126.28440 * 45.01994 * 8 4 3 10 10 O 1.21306 * 110.24537 * 179.97438 * 9 8 4 11 11 C 1.33638 * 109.81394 * 0.02562 * 10 9 8 12 12 C 1.50700 * 126.54990 * 179.97438 * 11 10 9 13 13 C 1.52993 * 109.47356 * 269.97794 * 12 11 10 14 14 H 1.08999 * 109.47354 * 54.99682 * 13 12 11 15 15 C 1.53002 * 109.47116 * 295.00005 * 13 12 11 16 16 C 1.50709 * 109.47261 * 175.00006 * 13 12 11 17 17 H 1.08000 * 119.99372 * 35.09910 * 16 13 12 18 18 C 1.37876 * 119.99681 * 215.10043 * 16 13 12 19 19 N 1.31514 * 119.99237 * 178.70991 * 18 16 13 20 20 Si 1.86793 * 120.00466 * 358.71076 * 18 16 13 21 21 H 1.48505 * 109.47203 * 84.70032 * 20 18 16 22 22 H 1.48499 * 109.47384 * 204.69984 * 20 18 16 23 23 H 1.48501 * 109.47442 * 324.70216 * 20 18 16 24 24 N 1.31130 * 106.89957 * 359.76935 * 11 10 9 25 25 H 1.08999 * 109.47379 * 60.00082 * 1 2 3 26 26 H 1.09006 * 109.46476 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47140 * 299.99331 * 1 2 3 28 28 H 1.08993 * 109.47477 * 120.00375 * 2 1 3 29 29 H 1.09008 * 109.46963 * 240.00716 * 2 1 3 30 30 H 1.09003 * 109.47433 * 185.32062 * 6 4 3 31 31 H 1.09002 * 109.47458 * 305.32354 * 6 4 3 32 32 H 1.08997 * 109.47152 * 182.77056 * 7 6 4 33 33 H 1.09002 * 109.47107 * 302.77608 * 7 6 4 34 34 H 1.08997 * 109.47123 * 62.77393 * 7 6 4 35 35 H 1.08997 * 109.47057 * 29.97900 * 12 11 10 36 36 H 1.09005 * 109.47352 * 149.97655 * 12 11 10 37 37 H 1.08999 * 109.46855 * 63.24144 * 15 13 12 38 38 H 1.09002 * 109.46836 * 183.23863 * 15 13 12 39 39 H 1.09000 * 109.47255 * 303.23611 * 15 13 12 40 40 H 0.97008 * 119.99945 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4281 1.4611 0.0857 5 1 3.8217 0.6480 0.6957 6 6 3.7948 2.8019 0.7250 7 6 3.3056 2.8265 2.1745 8 6 4.0225 1.3848 -1.2970 9 7 3.5925 2.0062 -2.3543 10 8 4.2872 1.7362 -3.3114 11 6 5.2553 0.8911 -2.9445 12 6 6.3260 0.3126 -3.8333 13 6 5.8297 -1.0007 -4.4412 14 1 4.8842 -0.8287 -4.9554 15 6 5.6255 -2.0321 -3.3298 16 6 6.8494 -1.5164 -5.4239 17 1 7.9028 -1.3710 -5.2352 18 6 6.4374 -2.1737 -6.5637 19 7 7.3261 -2.6014 -7.4336 20 14 4.6170 -2.4569 -6.8722 21 1 4.0314 -1.2546 -7.5179 22 1 4.4428 -3.6318 -7.7636 23 1 3.9293 -2.7094 -5.5805 24 7 5.0981 0.6648 -1.6625 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 4.8770 2.9304 0.7046 31 1 3.3223 3.6112 0.1684 32 1 3.5230 3.7996 2.6149 33 1 2.2304 2.6489 2.1982 34 1 3.8149 2.0485 2.7431 35 1 6.5561 1.0184 -4.6314 36 1 7.2241 0.1242 -3.2449 37 1 4.8467 -1.6850 -2.6507 38 1 5.3273 -2.9845 -3.7682 39 1 6.5569 -2.1617 -2.7786 40 1 7.0363 -3.0635 -8.2358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233781963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:36 Heat of formation + Delta-G solvation = -22.594557 kcal Electronic energy + Delta-G solvation = -20892.406897 eV Core-core repulsion = 17709.297533 eV Total energy + Delta-G solvation = -3183.109364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.62415 -39.80860 -37.63923 -36.62301 -34.96520 -34.16533 -32.76328 -31.85251 -28.67263 -28.22874 -27.22491 -24.69262 -24.11923 -23.37708 -22.24391 -21.17004 -19.34680 -18.96017 -18.54251 -17.94435 -17.05620 -16.46609 -15.95591 -15.88640 -15.50903 -14.98157 -14.83206 -14.63580 -14.17445 -14.04503 -13.54380 -13.40750 -13.26770 -13.16301 -12.98493 -12.69883 -12.59696 -12.49810 -12.37351 -12.23225 -12.09600 -12.04127 -11.81640 -11.76926 -11.61725 -11.11971 -10.98850 -10.87721 -10.70107 -8.28768 -6.32744 0.10279 1.11622 1.34240 1.37867 1.45543 1.84356 2.28589 2.34099 2.62993 3.07664 3.14841 3.72969 3.82736 4.02852 4.06845 4.19160 4.21144 4.28207 4.35210 4.41872 4.43545 4.54558 4.69094 4.74607 4.79252 4.85341 4.91778 4.93059 4.94040 5.03782 5.10592 5.11540 5.18038 5.34578 5.37176 5.57559 5.64881 5.97409 6.28214 6.75004 7.12055 7.33439 8.87179 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025426 B = 0.004721 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.986479 B = 5929.559071 C = 6508.237632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 O -0.375 6.375 4 C 0.184 3.816 5 H 0.105 0.895 6 C -0.110 4.110 7 C -0.141 4.141 8 C 0.135 3.865 9 N -0.390 5.390 10 O 0.060 5.940 11 C 0.207 3.793 12 C -0.012 4.012 13 C 0.016 3.984 14 H 0.028 0.972 15 C -0.130 4.130 16 C -0.508 4.508 17 H 0.052 0.948 18 C 0.024 3.976 19 N -0.942 5.942 20 Si 0.926 3.074 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.255 1.255 24 N -0.493 5.493 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.024 0.976 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.056 0.944 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.431 7.932 18.021 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 O -0.293 6.293 4 C 0.124 3.876 5 H 0.123 0.877 6 C -0.148 4.148 7 C -0.198 4.198 8 C -0.139 4.139 9 N -0.102 5.102 10 O 0.004 5.996 11 C -0.013 4.013 12 C -0.051 4.051 13 C -0.005 4.005 14 H 0.047 0.953 15 C -0.188 4.188 16 C -0.546 4.546 17 H 0.070 0.930 18 C -0.175 4.175 19 N -0.582 5.582 20 Si 0.751 3.249 21 H -0.192 1.192 22 H -0.214 1.214 23 H -0.179 1.179 24 N -0.228 5.228 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.042 0.958 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.156 8.355 18.254 22.967 hybrid contribution -0.207 -0.715 -1.116 1.341 sum -11.363 7.640 17.138 21.937 Atomic orbital electron populations 1.21730 0.91868 1.03522 1.03016 1.22770 0.97131 0.82751 1.00302 1.87994 1.19255 1.27950 1.94077 1.20555 0.80985 1.01968 0.84112 0.87688 1.21593 1.01804 0.93416 0.97981 1.21676 1.01875 1.03147 0.93111 1.27132 0.92792 0.94034 0.99901 1.74594 1.16549 1.22733 0.96313 1.85301 1.32321 1.49014 1.32934 1.29500 0.92078 0.88563 0.91126 1.20581 0.91301 0.97396 0.95870 1.19085 0.95980 0.91215 0.94183 0.95348 1.21908 1.00238 0.98950 0.97712 1.21048 0.93622 1.35778 1.04169 0.92960 1.25712 1.01071 0.95022 0.95653 1.70005 1.35771 1.40510 1.11889 0.86060 0.81702 0.78261 0.78851 1.19165 1.21411 1.17880 1.71942 1.17255 1.23566 1.09991 0.93141 0.89217 0.90572 0.90711 0.95776 0.89841 0.91770 0.90844 0.92083 0.91469 0.87226 0.86681 0.94896 0.94614 0.92503 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.05 1.02 6.48 71.98 0.47 1.48 16 3 O -0.38 -9.56 9.49 -148.98 -1.41 -10.98 16 4 C 0.18 4.55 2.65 29.85 0.08 4.63 16 5 H 0.11 2.27 7.78 -2.39 -0.02 2.25 16 6 C -0.11 -2.21 5.62 30.59 0.17 -2.04 16 7 C -0.14 -2.05 9.84 71.98 0.71 -1.34 16 8 C 0.14 4.34 6.98 138.46 0.97 5.31 16 9 N -0.39 -13.89 12.16 -60.29 -0.73 -14.62 16 10 O 0.06 2.16 11.31 74.87 0.85 3.00 16 11 C 0.21 7.22 6.97 88.38 0.62 7.84 16 12 C -0.01 -0.44 5.30 29.85 0.16 -0.28 16 13 C 0.02 0.67 1.89 -11.54 -0.02 0.64 16 14 H 0.03 1.25 5.58 -2.39 -0.01 1.24 16 15 C -0.13 -5.24 8.87 71.98 0.64 -4.61 16 16 C -0.51 -26.50 8.87 25.60 0.23 -26.27 16 17 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 18 C 0.02 1.30 5.47 84.65 0.46 1.76 16 19 N -0.94 -56.07 13.96 21.45 0.30 -55.77 16 20 Si 0.93 42.84 26.52 68.60 1.82 44.66 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.25 -11.22 6.71 99.48 0.67 -10.55 16 24 N -0.49 -16.74 10.99 -303.17 -3.33 -20.08 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 29 H 0.02 0.63 8.12 -2.38 -0.02 0.61 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.94 7.76 -2.39 -0.02 0.93 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.12 3.79 8.14 -2.38 -0.02 3.78 16 37 H 0.03 1.23 7.04 -2.39 -0.02 1.21 16 38 H 0.03 1.49 7.51 -2.39 -0.02 1.47 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -62.77 334.13 3.67 -59.11 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.97 Total: 9.32 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 5.21 Total: -14.65 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -3.77 Total: -90.46 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.57 Total: -7.97 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.82 Total: 44.66 kcal Total: -62.77 3.67 -59.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233781963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.511 kcal (2) G-P(sol) polarization free energy of solvation -62.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds