Wall clock time and date at job start Mon Mar 30 2020 07:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47356 * 2 1 4 4 C 1.42902 * 114.00328 * 178.90323 * 3 2 1 5 5 H 1.09002 * 109.46612 * 19.43553 * 4 3 2 6 6 C 1.53002 * 109.47234 * 259.43102 * 4 3 2 7 7 C 1.53004 * 109.46732 * 65.36099 * 6 4 3 8 8 C 1.50702 * 109.47244 * 139.42874 * 4 3 2 9 9 N 1.29950 * 126.28200 * 45.02607 * 8 4 3 10 10 O 1.21300 * 110.24534 * 179.97438 * 9 8 4 11 11 C 1.33644 * 109.81702 * 0.02562 * 10 9 8 12 12 C 1.50697 * 126.55260 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.46676 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47293 * 300.01875 * 12 11 10 15 15 C 1.52997 * 109.47257 * 60.02559 * 12 11 10 16 16 C 1.50702 * 109.46912 * 174.99900 * 15 12 11 17 17 H 1.08001 * 119.99929 * 359.97438 * 16 15 12 18 18 C 1.37875 * 119.99821 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00278 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99846 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47152 * 60.00258 * 20 18 16 22 22 H 1.48505 * 109.46964 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47403 * 299.99758 * 20 18 16 24 24 N 1.31134 * 106.89446 * 359.76418 * 11 10 9 25 25 H 1.09004 * 109.46709 * 299.99777 * 1 2 3 26 26 H 1.09000 * 109.47061 * 59.99962 * 1 2 3 27 27 H 1.08996 * 109.47268 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47205 * 240.00077 * 2 1 3 29 29 H 1.09001 * 109.47269 * 120.00549 * 2 1 3 30 30 H 1.08995 * 109.47058 * 185.35620 * 6 4 3 31 31 H 1.08998 * 109.46961 * 305.35914 * 6 4 3 32 32 H 1.08994 * 109.47265 * 57.85646 * 7 6 4 33 33 H 1.09007 * 109.46553 * 177.86085 * 7 6 4 34 34 H 1.08999 * 109.47151 * 297.85142 * 7 6 4 35 35 H 1.09006 * 109.46851 * 59.99971 * 14 12 11 36 36 H 1.08992 * 109.47788 * 180.02562 * 14 12 11 37 37 H 1.09002 * 109.47554 * 300.01083 * 14 12 11 38 38 H 1.09005 * 109.47064 * 294.99422 * 15 12 11 39 39 H 1.09001 * 109.47495 * 54.99723 * 15 12 11 40 40 H 0.97001 * 120.00486 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4307 1.4602 0.0250 5 1 3.8754 0.5206 -0.3030 6 6 3.8926 1.7733 1.4496 7 6 3.5723 0.5873 2.3618 8 6 3.8630 2.5698 -0.8986 9 7 3.3277 3.7508 -0.9849 10 8 3.9042 4.4127 -1.8221 11 6 4.8915 3.6950 -2.3662 12 6 5.8442 4.1496 -3.4417 13 1 6.5370 3.3421 -3.6784 14 6 5.0542 4.5277 -4.6962 15 6 6.6288 5.3663 -2.9470 16 6 7.6662 5.7458 -3.9722 17 1 7.7570 5.1758 -4.8851 18 6 8.4993 6.8205 -3.7447 19 7 8.3891 7.5143 -2.6329 20 14 9.7847 7.2913 -5.0158 21 1 9.1141 7.6225 -6.2987 22 1 10.5464 8.4722 -4.5355 23 1 10.7159 6.1533 -5.2232 24 7 4.8765 2.5214 -1.7813 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.9676 1.9532 1.4517 31 1 3.3748 2.6611 1.8125 32 1 4.0594 -0.3087 1.9772 33 1 3.9355 0.7948 3.3684 34 1 2.4939 0.4313 2.3896 35 1 4.3612 5.3352 -4.4596 36 1 5.7432 4.8561 -5.4743 37 1 4.4951 3.6609 -5.0486 38 1 5.9456 6.2020 -2.7950 39 1 7.1207 5.1231 -2.0052 40 1 8.9754 8.2702 -2.4726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233782078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:46 Heat of formation + Delta-G solvation = -24.497761 kcal Electronic energy + Delta-G solvation = -20530.976649 eV Core-core repulsion = 17347.784756 eV Total energy + Delta-G solvation = -3183.191893 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.64947 -39.89312 -37.56392 -36.74875 -34.79439 -34.24336 -32.49370 -31.88755 -29.00556 -28.30155 -26.30539 -24.78120 -24.27313 -23.64825 -22.73584 -21.09126 -19.11536 -18.64498 -18.36606 -17.86545 -17.07499 -16.52543 -16.32357 -16.11500 -15.17047 -15.05125 -14.79650 -14.42672 -13.90258 -13.73816 -13.56143 -13.33771 -13.21001 -13.04931 -12.88533 -12.79968 -12.61767 -12.54633 -12.43630 -12.29271 -12.21511 -12.16294 -11.92178 -11.76716 -11.62287 -11.27007 -10.86902 -10.63282 -10.53393 -8.17095 -6.28095 0.08330 1.06615 1.47584 1.49978 1.57295 1.82961 2.09919 2.45805 2.84164 3.10305 3.18316 3.64521 3.75670 4.01471 4.13333 4.15358 4.25183 4.26578 4.27808 4.37043 4.44053 4.52686 4.70952 4.75436 4.77224 4.81228 4.98215 4.99812 5.03662 5.06334 5.07742 5.23980 5.28851 5.36152 5.41109 5.58141 5.80215 6.05452 6.16625 6.85845 7.08330 7.41314 8.95323 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036279 B = 0.003651 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.619891 B = 7667.258118 C = 8053.819894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 O -0.391 6.391 4 C 0.189 3.811 5 H 0.110 0.890 6 C -0.134 4.134 7 C -0.144 4.144 8 C 0.157 3.843 9 N -0.391 5.391 10 O 0.062 5.938 11 C 0.213 3.787 12 C 0.009 3.991 13 H 0.116 0.884 14 C -0.129 4.129 15 C 0.037 3.963 16 C -0.529 4.529 17 H 0.080 0.920 18 C 0.001 3.999 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.262 1.262 22 H -0.291 1.291 23 H -0.266 1.266 24 N -0.502 5.502 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.004 0.996 39 H -0.012 1.012 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 -16.305 4.390 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 O -0.310 6.310 4 C 0.130 3.870 5 H 0.128 0.872 6 C -0.173 4.173 7 C -0.201 4.201 8 C -0.117 4.117 9 N -0.102 5.102 10 O 0.007 5.993 11 C -0.007 4.007 12 C -0.011 4.011 13 H 0.134 0.866 14 C -0.187 4.187 15 C -0.001 4.001 16 C -0.567 4.567 17 H 0.098 0.902 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.187 1.187 22 H -0.217 1.217 23 H -0.191 1.191 24 N -0.237 5.237 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.022 0.978 39 H 0.006 0.994 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.088 -16.182 5.054 20.821 hybrid contribution 1.006 0.815 -0.369 1.346 sum -11.082 -15.368 4.684 19.517 Atomic orbital electron populations 1.21768 0.92566 1.03692 1.02524 1.23032 0.96638 0.81966 1.01837 1.87985 1.18803 1.29323 1.94905 1.20211 0.82799 0.92468 0.91568 0.87198 1.21950 1.01338 1.01164 0.92852 1.21802 1.02548 0.96516 0.99272 1.26368 0.91900 0.94961 0.98456 1.74599 1.19617 1.07018 1.09005 1.85292 1.36069 1.39636 1.38304 1.29602 0.89843 0.85087 0.96133 1.20180 0.91678 1.00419 0.88854 0.86649 1.21740 0.99977 1.01414 0.95552 1.19033 0.94272 0.91087 0.95729 1.21478 1.16768 1.13642 1.04819 0.90213 1.25964 0.99880 0.96369 0.97498 1.70111 1.40205 1.20274 1.27003 0.85478 0.78715 0.77601 0.79134 1.18654 1.21700 1.19054 1.71878 1.20240 1.20987 1.10587 0.91959 0.93196 0.88333 0.92676 0.90316 0.91117 0.92138 0.90939 0.90917 0.91438 0.92711 0.89499 0.91311 0.97778 0.99373 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.04 0.71 6.03 71.98 0.43 1.15 16 3 O -0.39 -10.40 9.75 -148.98 -1.45 -11.86 16 4 C 0.19 5.14 2.82 29.85 0.08 5.22 16 5 H 0.11 2.51 7.69 -2.39 -0.02 2.49 16 6 C -0.13 -3.21 5.62 30.60 0.17 -3.04 16 7 C -0.14 -2.29 8.93 71.98 0.64 -1.64 16 8 C 0.16 5.69 7.10 138.46 0.98 6.68 16 9 N -0.39 -15.79 12.16 -60.31 -0.73 -16.53 16 10 O 0.06 2.58 11.31 74.83 0.85 3.43 16 11 C 0.21 8.53 7.02 88.38 0.62 9.15 16 12 C 0.01 0.36 2.81 -11.54 -0.03 0.32 16 13 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 14 C -0.13 -4.31 8.98 71.98 0.65 -3.67 16 15 C 0.04 1.85 4.43 29.85 0.13 1.99 16 16 C -0.53 -27.71 8.41 25.60 0.22 -27.49 16 17 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.94 -55.72 13.29 21.45 0.28 -55.44 16 20 Si 0.97 42.20 29.54 68.60 2.03 44.23 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 N -0.50 -19.32 11.55 -303.20 -3.50 -22.82 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 29 H 0.08 1.02 5.87 -2.39 -0.01 1.01 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.07 1.00 6.35 -2.39 -0.02 0.98 16 35 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.09 2.88 6.95 -2.39 -0.02 2.87 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -65.85 334.87 3.58 -62.27 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.01 Total: 9.00 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.10 Total: -12.29 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -3.95 Total: -94.78 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.61 Total: -8.43 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -65.85 3.58 -62.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233782078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.769 kcal (2) G-P(sol) polarization free energy of solvation -65.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds