Wall clock time and date at job start Mon Mar 30 2020 07:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47596 * 2 1 4 4 C 1.42900 * 114.00647 * 175.42578 * 3 2 1 5 5 H 1.09000 * 109.46583 * 18.91813 * 4 3 2 6 6 C 1.53000 * 109.46799 * 258.92040 * 4 3 2 7 7 C 1.52995 * 109.47236 * 65.79747 * 6 4 3 8 8 C 1.50694 * 109.47398 * 138.91840 * 4 3 2 9 9 N 1.29947 * 126.28739 * 45.02381 * 8 4 3 10 10 O 1.21298 * 110.25247 * 179.97438 * 9 8 4 11 11 C 1.33640 * 109.81068 * 0.02562 * 10 9 8 12 12 C 1.50702 * 126.55058 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46789 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47370 * 60.02540 * 12 11 10 15 15 C 1.53004 * 109.47135 * 300.02131 * 12 11 10 16 16 C 1.50699 * 109.47131 * 184.99986 * 15 12 11 17 17 H 1.07995 * 119.99775 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00012 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00133 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99929 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47217 * 89.99834 * 20 18 16 22 22 H 1.48503 * 109.47157 * 209.99733 * 20 18 16 23 23 H 1.48501 * 109.47061 * 329.99515 * 20 18 16 24 24 N 1.31133 * 106.89903 * 359.76586 * 11 10 9 25 25 H 1.08997 * 109.46785 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46657 * 299.99890 * 1 2 3 27 27 H 1.09002 * 109.47138 * 59.99963 * 1 2 3 28 28 H 1.09000 * 109.47157 * 240.00267 * 2 1 3 29 29 H 1.09005 * 109.47568 * 119.99750 * 2 1 3 30 30 H 1.09000 * 109.47114 * 305.79650 * 6 4 3 31 31 H 1.08999 * 109.47232 * 185.79649 * 6 4 3 32 32 H 1.08994 * 109.47761 * 55.41541 * 7 6 4 33 33 H 1.09007 * 109.47148 * 295.41390 * 7 6 4 34 34 H 1.09004 * 109.47390 * 175.42087 * 7 6 4 35 35 H 1.09000 * 109.46837 * 299.99904 * 14 12 11 36 36 H 1.08998 * 109.46852 * 59.99523 * 14 12 11 37 37 H 1.08998 * 109.47165 * 180.02562 * 14 12 11 38 38 H 1.08997 * 109.47502 * 305.00319 * 15 12 11 39 39 H 1.09001 * 109.46453 * 65.00209 * 15 12 11 40 40 H 0.97001 * 120.00444 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4270 1.4615 0.1041 5 1 3.8888 0.5130 -0.1700 6 6 3.8060 1.8162 1.5434 7 6 3.4419 0.6529 2.4680 8 6 3.9134 2.5440 -0.8247 9 7 3.3856 3.7217 -0.9763 10 8 4.0103 4.3592 -1.7976 11 6 5.0266 3.6263 -2.2624 12 6 6.0399 4.0495 -3.2945 13 1 6.7445 3.2359 -3.4668 14 6 6.7960 5.2810 -2.7920 15 6 5.3236 4.3895 -4.6030 16 6 6.3438 4.6938 -5.6697 17 1 7.3975 4.6488 -5.4376 18 6 5.9317 5.0297 -6.9418 19 7 4.6485 5.0851 -7.2243 20 14 7.1962 5.4062 -8.2642 21 1 7.5532 4.1542 -8.9786 22 1 6.6281 6.3819 -9.2290 23 1 8.4126 5.9820 -7.6364 24 7 4.9763 2.4703 -1.6455 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.2632 2.7095 1.8524 31 1 4.8781 2.0043 1.6010 32 1 3.9207 -0.2588 2.1109 33 1 2.3603 0.5173 2.4729 34 1 3.7852 0.8713 3.4793 35 1 6.0914 6.0946 -2.6197 36 1 7.3063 5.0387 -1.8598 37 1 7.5286 5.5873 -3.5387 38 1 4.7141 3.5413 -4.9146 39 1 4.6851 5.2599 -4.4520 40 1 4.3586 5.3210 -8.1194 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233782223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:50 Heat of formation + Delta-G solvation = -5.402502 kcal Electronic energy + Delta-G solvation = -20542.821052 eV Core-core repulsion = 17360.457191 eV Total energy + Delta-G solvation = -3182.363861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.12191 -38.86569 -35.89683 -35.29087 -33.60629 -32.49028 -31.34908 -30.64684 -27.23903 -27.12498 -24.63327 -23.26663 -23.06948 -22.56715 -21.49420 -19.60875 -17.56355 -17.05389 -16.86156 -16.46460 -16.07763 -15.14718 -14.59171 -14.47270 -14.29170 -14.00925 -13.38518 -12.78034 -12.67618 -12.62385 -12.51086 -12.13150 -11.97749 -11.74513 -11.61456 -11.54360 -11.36931 -11.10698 -11.00237 -10.94751 -10.87872 -10.58831 -10.53805 -10.16810 -9.93996 -9.69441 -9.25480 -9.18476 -8.44319 -6.08018 -4.12242 1.63692 2.52743 3.25223 3.29151 3.35395 3.37426 3.41493 4.02028 4.38056 4.51140 4.68255 4.75459 4.88152 4.97968 5.02401 5.17268 5.27096 5.28288 5.41451 5.50903 5.56223 5.70809 5.73055 5.74523 5.82990 5.85385 5.97240 5.97920 6.02091 6.24877 6.33922 6.56254 6.67665 6.83206 6.99888 7.48870 7.56963 7.87213 8.23236 8.61967 8.92150 9.52228 11.03272 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029743 B = 0.003808 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.157097 B = 7350.498222 C = 7900.302026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.369 6.369 4 C 0.189 3.811 5 H 0.091 0.909 6 C -0.135 4.135 7 C -0.152 4.152 8 C 0.152 3.848 9 N -0.371 5.371 10 O 0.080 5.920 11 C 0.219 3.781 12 C -0.001 4.001 13 H 0.106 0.894 14 C -0.135 4.135 15 C 0.028 3.972 16 C -0.521 4.521 17 H 0.062 0.938 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 N -0.498 5.498 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.030 0.970 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 -8.505 16.260 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.287 6.287 4 C 0.130 3.870 5 H 0.109 0.891 6 C -0.173 4.173 7 C -0.209 4.209 8 C -0.122 4.122 9 N -0.080 5.080 10 O 0.021 5.979 11 C -0.001 4.001 12 C -0.022 4.022 13 H 0.124 0.876 14 C -0.193 4.193 15 C -0.010 4.010 16 C -0.560 4.560 17 H 0.081 0.919 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 N -0.232 5.232 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.276 -8.474 16.670 18.985 hybrid contribution 0.743 0.006 -1.012 1.256 sum -2.533 -8.468 15.658 17.980 Atomic orbital electron populations 1.21734 0.93493 1.02198 1.03351 1.22715 0.95885 0.83506 1.00465 1.88010 1.19490 1.26772 1.94458 1.19959 0.82214 0.93688 0.91187 0.89112 1.21944 1.02162 1.00241 0.92971 1.21822 1.01968 0.97735 0.99362 1.25527 0.92462 0.94509 0.99703 1.74597 1.17641 1.07330 1.08388 1.85312 1.32641 1.39749 1.40224 1.29595 0.90285 0.84980 0.95193 1.20358 0.91562 0.99509 0.90725 0.87642 1.21782 1.00720 0.96492 1.00310 1.19247 0.96028 0.97746 0.87933 1.21052 0.92790 1.47569 0.94544 0.91934 1.25005 0.95255 0.95316 0.98652 1.69968 1.13984 1.48005 1.20973 0.86541 0.81430 0.78175 0.81554 1.20629 1.21215 1.19698 1.71871 1.19412 1.21440 1.10517 0.91019 0.91827 0.91669 0.93114 0.92656 0.90414 0.90527 0.92565 0.92016 0.92045 0.92283 0.94081 0.89628 0.96009 0.95210 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.05 0.54 6.03 37.16 0.22 0.76 16 3 O -0.37 -5.33 9.76 -35.23 -0.34 -5.67 16 4 C 0.19 2.68 2.81 -27.89 -0.08 2.60 16 5 H 0.09 1.15 7.70 -51.93 -0.40 0.75 16 6 C -0.13 -1.55 5.62 -26.73 -0.15 -1.70 16 7 C -0.15 -1.30 8.79 37.16 0.33 -0.97 16 8 C 0.15 2.76 7.10 -156.37 -1.11 1.65 16 9 N -0.37 -7.37 12.16 30.90 0.38 -6.99 16 10 O 0.08 1.62 11.31 18.11 0.20 1.83 16 11 C 0.22 4.34 7.02 -13.06 -0.09 4.25 16 12 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 13 H 0.11 2.03 8.14 -51.93 -0.42 1.60 16 14 C -0.14 -2.32 8.99 37.16 0.33 -1.99 16 15 C 0.03 0.70 4.43 -27.88 -0.12 0.57 16 16 C -0.52 -13.68 8.41 -34.44 -0.29 -13.97 16 17 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 20 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 N -0.50 -9.65 11.55 -9.87 -0.11 -9.76 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.47 6.01 -51.93 -0.31 0.15 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.52 6.66 -51.93 -0.35 0.18 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -30.36 335.19 -6.46 -36.82 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.42 Total: -3.21 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.93 Total: -8.54 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 1.00 Total: -42.01 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.14 Total: -3.85 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.36 -6.46 -36.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233782223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.421 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds