Wall clock time and date at job start Mon Mar 30 2020 07:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47596 * 2 1 4 4 C 1.42900 * 114.00647 * 175.42578 * 3 2 1 5 5 H 1.09000 * 109.46583 * 18.91813 * 4 3 2 6 6 C 1.53000 * 109.46799 * 258.92040 * 4 3 2 7 7 C 1.52995 * 109.47236 * 65.79747 * 6 4 3 8 8 C 1.50694 * 109.47398 * 138.91840 * 4 3 2 9 9 N 1.29947 * 126.28739 * 45.02381 * 8 4 3 10 10 O 1.21298 * 110.25247 * 179.97438 * 9 8 4 11 11 C 1.33640 * 109.81068 * 0.02562 * 10 9 8 12 12 C 1.50702 * 126.55058 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46789 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47370 * 60.02540 * 12 11 10 15 15 C 1.53004 * 109.47135 * 300.02131 * 12 11 10 16 16 C 1.50699 * 109.47131 * 184.99986 * 15 12 11 17 17 H 1.07995 * 119.99775 * 0.02562 * 16 15 12 18 18 C 1.37873 * 120.00012 * 180.02562 * 16 15 12 19 19 N 1.31515 * 120.00133 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99929 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47217 * 89.99834 * 20 18 16 22 22 H 1.48503 * 109.47157 * 209.99733 * 20 18 16 23 23 H 1.48501 * 109.47061 * 329.99515 * 20 18 16 24 24 N 1.31133 * 106.89903 * 359.76586 * 11 10 9 25 25 H 1.08997 * 109.46785 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46657 * 299.99890 * 1 2 3 27 27 H 1.09002 * 109.47138 * 59.99963 * 1 2 3 28 28 H 1.09000 * 109.47157 * 240.00267 * 2 1 3 29 29 H 1.09005 * 109.47568 * 119.99750 * 2 1 3 30 30 H 1.09000 * 109.47114 * 305.79650 * 6 4 3 31 31 H 1.08999 * 109.47232 * 185.79649 * 6 4 3 32 32 H 1.08994 * 109.47761 * 55.41541 * 7 6 4 33 33 H 1.09007 * 109.47148 * 295.41390 * 7 6 4 34 34 H 1.09004 * 109.47390 * 175.42087 * 7 6 4 35 35 H 1.09000 * 109.46837 * 299.99904 * 14 12 11 36 36 H 1.08998 * 109.46852 * 59.99523 * 14 12 11 37 37 H 1.08998 * 109.47165 * 180.02562 * 14 12 11 38 38 H 1.08997 * 109.47502 * 305.00319 * 15 12 11 39 39 H 1.09001 * 109.46453 * 65.00209 * 15 12 11 40 40 H 0.97001 * 120.00444 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4270 1.4615 0.1041 5 1 3.8888 0.5130 -0.1700 6 6 3.8060 1.8162 1.5434 7 6 3.4419 0.6529 2.4680 8 6 3.9134 2.5440 -0.8247 9 7 3.3856 3.7217 -0.9763 10 8 4.0103 4.3592 -1.7976 11 6 5.0266 3.6263 -2.2624 12 6 6.0399 4.0495 -3.2945 13 1 6.7445 3.2359 -3.4668 14 6 6.7960 5.2810 -2.7920 15 6 5.3236 4.3895 -4.6030 16 6 6.3438 4.6938 -5.6697 17 1 7.3975 4.6488 -5.4376 18 6 5.9317 5.0297 -6.9418 19 7 4.6485 5.0851 -7.2243 20 14 7.1962 5.4062 -8.2642 21 1 7.5532 4.1542 -8.9786 22 1 6.6281 6.3819 -9.2290 23 1 8.4126 5.9820 -7.6364 24 7 4.9763 2.4703 -1.6455 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.2632 2.7095 1.8524 31 1 4.8781 2.0043 1.6010 32 1 3.9207 -0.2588 2.1109 33 1 2.3603 0.5173 2.4729 34 1 3.7852 0.8713 3.4793 35 1 6.0914 6.0946 -2.6197 36 1 7.3063 5.0387 -1.8598 37 1 7.5286 5.5873 -3.5387 38 1 4.7141 3.5413 -4.9146 39 1 4.6851 5.2599 -4.4520 40 1 4.3586 5.3210 -8.1194 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233782223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:49 Heat of formation + Delta-G solvation = -24.998154 kcal Electronic energy + Delta-G solvation = -20543.670783 eV Core-core repulsion = 17360.457191 eV Total energy + Delta-G solvation = -3183.213592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.64872 -39.89075 -37.56349 -36.75123 -34.79509 -34.24180 -32.49003 -31.89950 -29.00761 -28.28986 -26.30180 -24.77681 -24.27850 -23.67338 -22.71088 -21.09787 -19.11050 -18.66082 -18.36913 -17.85269 -17.07710 -16.51134 -16.30848 -16.12751 -15.16670 -15.04814 -14.82461 -14.42939 -13.91614 -13.69510 -13.58648 -13.36249 -13.20163 -13.06481 -12.83882 -12.78347 -12.65302 -12.54171 -12.44049 -12.26908 -12.20896 -12.16971 -11.92300 -11.79360 -11.58823 -11.25685 -10.86444 -10.65454 -10.54762 -8.17516 -6.28635 0.08581 1.06096 1.47466 1.47951 1.59013 1.83080 2.12165 2.45404 2.83129 3.10657 3.18019 3.64969 3.76869 4.02607 4.11708 4.16205 4.24204 4.27027 4.28721 4.38034 4.42129 4.53396 4.72188 4.75869 4.77491 4.81208 4.96823 5.00692 5.04208 5.07365 5.08671 5.22491 5.30425 5.36781 5.40519 5.57898 5.79948 6.04975 6.16051 6.85671 7.08512 7.40931 8.95157 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029743 B = 0.003808 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.157097 B = 7350.498222 C = 7900.302026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.394 6.394 4 C 0.186 3.814 5 H 0.107 0.893 6 C -0.129 4.129 7 C -0.146 4.146 8 C 0.157 3.843 9 N -0.391 5.391 10 O 0.062 5.938 11 C 0.213 3.787 12 C 0.009 3.991 13 H 0.116 0.884 14 C -0.128 4.128 15 C 0.036 3.964 16 C -0.528 4.528 17 H 0.081 0.919 18 C 0.000 4.000 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.254 1.254 24 N -0.502 5.502 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.086 0.914 38 H -0.014 1.014 39 H 0.004 0.996 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 -9.641 17.490 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.313 6.313 4 C 0.126 3.874 5 H 0.125 0.875 6 C -0.167 4.167 7 C -0.203 4.203 8 C -0.117 4.117 9 N -0.102 5.102 10 O 0.007 5.993 11 C -0.007 4.007 12 C -0.011 4.011 13 H 0.133 0.867 14 C -0.186 4.186 15 C -0.002 4.002 16 C -0.566 4.566 17 H 0.099 0.901 18 C -0.198 4.198 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.178 1.178 24 N -0.237 5.237 25 H 0.117 0.883 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.004 0.996 39 H 0.022 0.978 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.757 -9.599 17.906 20.392 hybrid contribution 0.200 0.292 -1.352 1.398 sum -1.558 -9.307 16.554 19.054 Atomic orbital electron populations 1.21770 0.92621 1.03694 1.02505 1.22997 0.96643 0.82021 1.01680 1.87987 1.19444 1.29242 1.94615 1.20296 0.82498 0.92931 0.91667 0.87530 1.21918 1.01994 1.01033 0.91794 1.21800 1.02265 0.96879 0.99329 1.26393 0.91427 0.94849 0.99057 1.74593 1.18271 1.08310 1.09055 1.85292 1.32975 1.40294 1.40748 1.29602 0.90287 0.85318 0.95476 1.20180 0.91282 1.01143 0.88517 0.86656 1.21740 1.00361 0.94925 1.01599 1.19043 0.95524 0.95157 0.90510 1.21504 0.93843 1.46381 0.94839 0.90130 1.25977 0.97142 0.95261 1.01401 1.70124 1.16368 1.49608 1.21548 0.85410 0.79174 0.77927 0.78327 1.20164 1.21494 1.17776 1.71883 1.20058 1.20959 1.10802 0.88342 0.91607 0.93563 0.93284 0.89961 0.91880 0.90350 0.91148 0.91839 0.90558 0.92693 0.91109 0.89565 0.99607 0.97786 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.04 0.82 6.03 71.98 0.43 1.26 16 3 O -0.39 -11.08 9.76 -148.98 -1.45 -12.53 16 4 C 0.19 5.05 2.81 29.85 0.08 5.13 16 5 H 0.11 2.50 7.70 -2.39 -0.02 2.48 16 6 C -0.13 -2.77 5.62 30.59 0.17 -2.60 16 7 C -0.15 -2.08 8.79 71.98 0.63 -1.45 16 8 C 0.16 5.67 7.10 138.46 0.98 6.66 16 9 N -0.39 -15.78 12.16 -60.33 -0.73 -16.51 16 10 O 0.06 2.58 11.31 74.86 0.85 3.42 16 11 C 0.21 8.52 7.02 88.38 0.62 9.14 16 12 C 0.01 0.36 2.81 -11.54 -0.03 0.33 16 13 H 0.12 4.32 8.14 -2.39 -0.02 4.31 16 14 C -0.13 -4.25 8.99 71.98 0.65 -3.60 16 15 C 0.04 1.81 4.43 29.85 0.13 1.94 16 16 C -0.53 -27.72 8.41 25.60 0.22 -27.50 16 17 H 0.08 3.86 7.06 -2.91 -0.02 3.84 16 18 C 0.00 0.00 5.46 84.65 0.46 0.46 16 19 N -0.94 -56.03 13.29 21.45 0.28 -55.75 16 20 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 24 N -0.50 -19.31 11.55 -303.20 -3.50 -22.81 16 25 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.15 6.01 -2.38 -0.01 1.14 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.90 6.66 -2.38 -0.02 0.88 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.09 2.84 6.95 -2.39 -0.02 2.83 16 38 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -66.59 335.19 3.57 -63.02 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.01 Total: 8.83 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 5.09 Total: -12.03 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -3.95 Total: -95.07 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.61 Total: -9.11 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -66.59 3.57 -63.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233782223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.025 kcal (2) G-P(sol) polarization free energy of solvation -66.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds