Wall clock time and date at job start Mon Mar 30 2020 07:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46958 * 2 1 4 4 C 1.53003 * 109.47161 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47563 * 299.99985 * 3 2 1 6 6 H 1.08001 * 119.99957 * 119.99679 * 5 3 2 7 7 C 1.37880 * 119.99962 * 300.00334 * 5 3 2 8 8 N 1.31520 * 119.99802 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00006 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46852 * 59.99696 * 9 7 5 11 11 H 1.48492 * 109.47007 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47131 * 300.00165 * 9 7 5 13 13 C 1.53001 * 109.47056 * 60.00593 * 3 2 1 14 14 C 1.50698 * 109.47431 * 59.99311 * 13 3 2 15 15 N 1.31130 * 126.54646 * 90.00204 * 14 13 3 16 16 C 1.34492 * 105.61399 * 179.97438 * 15 14 13 17 17 C 1.50700 * 126.29104 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.47116 * 270.02946 * 17 16 15 19 19 O 1.42904 * 109.46950 * 180.02562 * 18 17 16 20 20 C 1.42897 * 113.99981 * 179.97438 * 19 18 17 21 21 N 1.29954 * 107.42242 * 359.97438 * 16 15 14 22 22 O 1.21293 * 110.25286 * 0.02562 * 21 16 15 23 23 H 1.09000 * 109.47405 * 59.99794 * 1 2 3 24 24 H 1.08997 * 109.46866 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47156 * 299.99744 * 1 2 3 26 26 H 1.08999 * 109.47156 * 240.00256 * 2 1 3 27 27 H 1.09000 * 109.47405 * 120.00206 * 2 1 3 28 28 H 1.09000 * 109.47324 * 300.00281 * 4 3 2 29 29 H 1.08999 * 109.47034 * 60.00206 * 4 3 2 30 30 H 1.08997 * 109.47069 * 180.02562 * 4 3 2 31 31 H 0.96995 * 119.99350 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46731 * 299.99590 * 13 3 2 33 33 H 1.08997 * 109.47295 * 179.97438 * 13 3 2 34 34 H 1.09003 * 109.46608 * 30.02814 * 17 16 15 35 35 H 1.08999 * 109.47381 * 150.02179 * 17 16 15 36 36 H 1.09007 * 109.46567 * 299.99347 * 18 17 16 37 37 H 1.08994 * 109.47187 * 59.99541 * 18 17 16 38 38 H 1.08994 * 109.47348 * 179.97438 * 20 19 18 39 39 H 1.09008 * 109.46855 * 300.00252 * 20 19 18 40 40 H 1.09001 * 109.47305 * 59.99251 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 1.5376 2.1530 -1.2304 6 1 0.9167 3.0311 -1.1313 7 6 1.8707 1.6820 -2.4827 8 7 2.6272 0.6129 -2.6034 9 14 1.2475 2.5623 -4.0079 10 1 1.7420 3.9625 -4.0080 11 1 1.7431 1.8627 -5.2204 12 1 -0.2375 2.5618 -4.0077 13 6 1.5300 2.1637 1.2493 14 6 2.0323 1.4533 2.4797 15 7 3.1527 1.6933 3.1173 16 6 3.1788 0.8241 4.1433 17 6 4.2669 0.6982 5.1783 18 6 5.3159 -0.3057 4.6960 19 8 6.3474 -0.4255 5.6777 20 6 7.3829 -1.3445 5.3237 21 7 2.0928 0.1133 4.0788 22 8 1.4206 0.4589 3.1301 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.9330 0.9289 0.8908 29 1 3.9337 0.9287 -0.8891 30 1 3.9332 2.4703 0.0011 31 1 2.8618 0.2818 -3.4844 32 1 0.4400 2.1637 1.2493 33 1 1.8937 3.1912 1.2496 34 1 4.7370 1.6697 5.3311 35 1 3.8365 0.3511 6.1176 36 1 4.8458 -1.2772 4.5431 37 1 5.7463 0.0415 3.7567 38 1 8.1268 -1.3778 6.1196 39 1 6.9552 -2.3373 5.1837 40 1 7.8565 -1.0190 4.3975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233947242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:18 Heat of formation + Delta-G solvation = 4.557820 kcal Electronic energy + Delta-G solvation = -21231.849089 eV Core-core repulsion = 18049.917140 eV Total energy + Delta-G solvation = -3181.931949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.11372 -38.12432 -37.08728 -35.65619 -33.14434 -31.69773 -30.57647 -29.26121 -26.88035 -26.70159 -25.27380 -24.14216 -22.80614 -22.20319 -20.97205 -18.71975 -17.71705 -16.92032 -16.42415 -16.05417 -15.84814 -15.17094 -14.81937 -14.24428 -13.91635 -13.51846 -13.44644 -13.06935 -12.49616 -12.41940 -12.18489 -11.84023 -11.59847 -11.50864 -11.41894 -11.07322 -10.95774 -10.80436 -10.71987 -10.58049 -10.42518 -10.21216 -10.01190 -9.82510 -9.58176 -9.39922 -9.07052 -8.73746 -8.38485 -6.03896 -4.14502 1.62925 2.59966 3.27485 3.33171 3.33762 3.38656 3.50850 4.21685 4.37141 4.44165 4.94256 4.98685 5.20614 5.22821 5.23573 5.29397 5.46980 5.52702 5.72203 5.84665 6.01054 6.07409 6.16614 6.33256 6.45668 6.47105 6.53254 6.67716 6.91110 6.94131 6.97130 7.11989 7.29485 7.41672 7.60041 7.68231 7.94989 8.10189 8.33812 8.63073 8.83806 9.50256 10.97319 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.026576 B = 0.004688 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.333164 B = 5970.983208 C = 6463.538395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C 0.079 3.921 4 C -0.131 4.131 5 C -0.504 4.504 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.028 4.028 14 C 0.224 3.776 15 N -0.491 5.491 16 C 0.161 3.839 17 C -0.020 4.020 18 C 0.068 3.932 19 O -0.392 6.392 20 C 0.033 3.967 21 N -0.397 5.397 22 O 0.072 5.928 23 H 0.064 0.936 24 H 0.025 0.975 25 H 0.033 0.967 26 H 0.095 0.905 27 H 0.009 0.991 28 H 0.008 0.992 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.041 0.959 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -1.546 10.657 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C 0.078 3.922 4 C -0.189 4.189 5 C -0.542 4.542 6 H 0.077 0.923 7 C -0.132 4.132 8 N -0.521 5.521 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.067 4.067 14 C 0.005 3.995 15 N -0.225 5.225 16 C -0.112 4.112 17 C -0.059 4.059 18 C -0.010 4.010 19 O -0.311 6.311 20 C -0.064 4.064 21 N -0.107 5.107 22 O 0.015 5.985 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.114 0.886 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.365 -1.980 11.338 11.992 hybrid contribution -0.310 0.234 -1.238 1.297 sum 3.055 -1.746 10.100 10.696 Atomic orbital electron populations 1.21671 0.97720 0.98635 1.01085 1.21595 0.94414 0.98491 1.00431 1.18191 0.92930 0.92084 0.88995 1.21840 0.97297 0.99508 1.00247 1.20852 1.31737 1.12102 0.89533 0.92300 1.24850 0.94809 0.94843 0.98746 1.69797 1.36269 1.22614 1.23399 0.86664 0.79215 0.79802 0.82365 1.20290 1.21389 1.20233 1.20955 1.01475 0.98398 0.85880 1.29445 0.87162 0.86903 0.95967 1.71965 1.18755 1.24998 1.06768 1.25408 0.95931 0.92492 0.97391 1.19586 0.90532 1.01681 0.94118 1.22398 0.88438 0.98464 0.91665 1.87797 1.34732 1.64123 1.44402 1.22748 0.90312 0.92239 1.01096 1.74549 1.07263 1.22489 1.06449 1.85294 1.42024 1.41915 1.29302 0.91708 0.95594 0.94800 0.88626 0.97254 0.97310 0.89760 0.95111 0.92870 0.88983 0.88432 0.88038 0.88704 0.92885 0.92194 0.89511 0.93988 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.31 37.16 0.35 -2.34 16 2 C -0.11 -2.48 4.52 -26.73 -0.12 -2.60 16 3 C 0.08 1.76 0.30 -155.66 -0.05 1.72 16 4 C -0.13 -3.04 7.98 37.16 0.30 -2.74 16 5 C -0.50 -12.18 6.75 -34.44 -0.23 -12.41 16 6 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 7 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 8 N -0.88 -22.90 9.36 55.43 0.52 -22.38 16 9 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 C -0.03 -0.53 4.50 -27.88 -0.13 -0.66 16 14 C 0.22 4.26 5.75 -13.06 -0.08 4.18 16 15 N -0.49 -9.32 10.80 -9.87 -0.11 -9.42 16 16 C 0.16 2.78 7.47 -156.37 -1.17 1.61 16 17 C -0.02 -0.28 6.21 -27.88 -0.17 -0.45 16 18 C 0.07 0.90 5.92 37.16 0.22 1.12 16 19 O -0.39 -4.95 10.70 -35.23 -0.38 -5.32 16 20 C 0.03 0.31 11.01 101.05 1.11 1.42 16 21 N -0.40 -7.30 12.16 30.90 0.38 -6.93 16 22 O 0.07 1.36 10.70 18.11 0.19 1.55 16 23 H 0.06 1.37 7.22 -51.93 -0.37 1.00 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.03 0.61 6.43 -51.93 -0.33 0.28 16 26 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 27 H 0.01 0.20 6.75 -51.93 -0.35 -0.15 16 28 H 0.01 0.18 6.67 -51.93 -0.35 -0.17 16 29 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.09 1.61 6.43 -51.93 -0.33 1.28 16 33 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.37 8.14 -51.92 -0.42 -0.06 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -26.64 322.54 -5.75 -32.39 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.14 Total: -0.01 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.06 Total: -9.51 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.79 Total: -38.73 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.18 Total: -3.77 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.64 -5.75 -32.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233947242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.947 kcal (2) G-P(sol) polarization free energy of solvation -26.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds