Wall clock time and date at job start Mon Mar 30 2020 07:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47078 * 299.99663 * 3 2 1 6 6 H 1.08000 * 119.99792 * 120.00083 * 5 3 2 7 7 C 1.37877 * 120.00384 * 300.00152 * 5 3 2 8 8 N 1.31518 * 119.99251 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00171 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47160 * 90.00384 * 9 7 5 11 11 H 1.48504 * 109.47092 * 209.99867 * 9 7 5 12 12 H 1.48494 * 109.47401 * 329.99761 * 9 7 5 13 13 C 1.53005 * 109.47452 * 59.99878 * 3 2 1 14 14 C 1.50699 * 109.47155 * 59.99832 * 13 3 2 15 15 N 1.31124 * 126.55185 * 89.71252 * 14 13 3 16 16 C 1.34495 * 105.61765 * 179.91567 * 15 14 13 17 17 C 1.50698 * 126.29095 * 180.12681 * 16 15 14 18 18 H 1.09010 * 109.47019 * 345.29195 * 17 16 15 19 19 C 1.52995 * 109.47248 * 105.28849 * 17 16 15 20 20 O 1.42899 * 109.47314 * 225.29595 * 17 16 15 21 21 C 1.42899 * 114.00233 * 149.99821 * 20 17 16 22 22 N 1.29940 * 107.42068 * 0.35475 * 16 15 14 23 23 O 1.21302 * 110.25578 * 359.77570 * 22 16 15 24 24 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 28 28 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 29 29 H 1.08992 * 109.47534 * 59.99520 * 4 3 2 30 30 H 1.08996 * 109.47134 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46997 * 299.99574 * 4 3 2 32 32 H 0.97005 * 119.99253 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47360 * 180.02562 * 13 3 2 34 34 H 1.09002 * 109.46935 * 300.00125 * 13 3 2 35 35 H 1.09000 * 109.47602 * 300.00553 * 19 17 16 36 36 H 1.09010 * 109.46828 * 60.00229 * 19 17 16 37 37 H 1.08997 * 109.47640 * 179.97438 * 19 17 16 38 38 H 1.08990 * 109.47218 * 299.99668 * 21 20 17 39 39 H 1.09011 * 109.46637 * 60.00062 * 21 20 17 40 40 H 1.09002 * 109.47005 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 1.5378 2.1528 -1.2305 6 1 0.9169 3.0309 -1.1314 7 6 1.8709 1.6818 -2.4828 8 7 2.6274 0.6128 -2.6033 9 14 1.2477 2.5619 -4.0079 10 1 2.2255 3.6040 -4.4124 11 1 1.0829 1.5826 -5.1120 12 1 -0.0607 3.1989 -3.7121 13 6 1.5301 2.1638 1.2492 14 6 2.0323 1.4535 2.4797 15 7 3.1552 1.6899 3.1143 16 6 3.1794 0.8233 4.1425 17 6 4.2681 0.6965 5.1767 18 1 5.1581 1.2245 4.8340 19 6 3.7909 1.3051 6.4968 20 8 4.5797 -0.6841 5.3737 21 6 5.9367 -0.9257 5.7511 22 7 2.0939 0.1120 4.0774 23 8 1.4212 0.4581 3.1293 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.9330 0.9288 -0.8907 30 1 3.9333 2.4701 -0.0002 31 1 3.9337 0.9286 0.8892 32 1 2.8620 0.2816 -3.4843 33 1 1.8930 3.1916 1.2490 34 1 0.4400 2.1638 1.2492 35 1 3.5532 2.3582 6.3466 36 1 2.9009 0.7771 6.8396 37 1 4.5781 1.2130 7.2450 38 1 6.6021 -0.5538 4.9721 39 1 6.1503 -0.4109 6.6879 40 1 6.0923 -1.9966 5.8816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233947411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:25 Heat of formation + Delta-G solvation = 10.131965 kcal Electronic energy + Delta-G solvation = -21501.708890 eV Core-core repulsion = 18320.018655 eV Total energy + Delta-G solvation = -3181.690236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.06936 -38.45846 -37.05027 -35.27281 -32.87069 -31.58856 -30.59014 -29.22015 -27.01080 -26.71563 -25.25010 -24.55435 -22.87695 -22.15238 -20.82405 -18.74591 -17.63203 -17.05286 -16.50239 -15.81928 -15.58970 -15.32348 -14.78518 -14.03175 -13.57020 -13.40925 -13.37553 -12.85992 -12.62760 -12.45193 -12.16518 -11.93263 -11.75057 -11.51143 -11.16573 -11.04033 -11.00457 -10.87133 -10.66801 -10.55534 -10.38856 -10.18288 -10.04530 -9.86822 -9.54163 -9.36525 -9.03005 -8.69465 -8.36015 -6.01129 -4.11777 1.70029 2.60743 3.27866 3.34687 3.35792 3.37494 3.50073 4.12676 4.38336 4.61045 4.82213 4.98237 5.13238 5.24817 5.25506 5.37711 5.49827 5.55590 5.70292 5.95493 6.02051 6.09447 6.15019 6.36511 6.48670 6.51123 6.56095 6.71527 6.95318 6.95972 7.01931 7.16006 7.33515 7.45395 7.63813 7.71290 7.98781 8.14014 8.36960 8.69003 8.86778 9.52870 11.00046 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033880 B = 0.004741 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.237839 B = 5904.852590 C = 6084.099199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C 0.079 3.921 4 C -0.132 4.132 5 C -0.503 4.503 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.027 4.027 14 C 0.222 3.778 15 N -0.490 5.490 16 C 0.156 3.844 17 C 0.183 3.817 18 H 0.091 0.909 19 C -0.166 4.166 20 O -0.375 6.375 21 C 0.031 3.969 22 N -0.375 5.375 23 O 0.074 5.926 24 H 0.033 0.967 25 H 0.064 0.936 26 H 0.025 0.975 27 H 0.010 0.990 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.029 0.971 31 H 0.009 0.991 32 H 0.260 0.740 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 0.711 12.755 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.078 3.922 4 C -0.189 4.189 5 C -0.541 4.541 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.066 4.066 14 C 0.003 3.997 15 N -0.224 5.224 16 C -0.118 4.118 17 C 0.124 3.876 18 H 0.109 0.891 19 C -0.224 4.224 20 O -0.293 6.293 21 C -0.066 4.066 22 N -0.084 5.084 23 O 0.015 5.985 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.028 0.972 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.874 0.004 13.256 13.563 hybrid contribution -0.059 0.579 -0.939 1.104 sum 2.815 0.583 12.317 12.648 Atomic orbital electron populations 1.21673 0.97731 0.98640 1.01039 1.21596 0.94402 0.98478 1.00519 1.18193 0.92934 0.92116 0.88990 1.21841 0.97308 0.99438 1.00352 1.20888 1.31647 1.12043 0.89529 0.92267 1.24855 0.94860 0.94842 0.98754 1.69817 1.36350 1.22600 1.23259 0.86606 0.79262 0.79396 0.82807 1.20771 1.21325 1.19868 1.20946 1.01464 0.98355 0.85866 1.29409 0.87138 0.87048 0.96073 1.71891 1.18817 1.25354 1.06334 1.25336 0.96022 0.93151 0.97267 1.19928 0.93119 0.83857 0.90711 0.89145 1.22228 1.02743 1.01490 0.95982 1.88005 1.28356 1.23414 1.89530 1.22854 0.82524 1.02369 0.98834 1.74555 1.06867 1.21267 1.05737 1.85326 1.42110 1.41589 1.29481 0.94810 0.91735 0.95579 0.97151 0.88633 0.89740 0.95171 0.97237 0.92943 0.88476 0.88971 0.90968 0.91226 0.91238 0.93580 0.93802 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.31 37.16 0.35 -2.39 16 2 C -0.11 -2.57 4.52 -26.73 -0.12 -2.69 16 3 C 0.08 1.79 0.30 -155.66 -0.05 1.74 16 4 C -0.13 -3.12 7.97 37.16 0.30 -2.82 16 5 C -0.50 -12.29 6.75 -34.44 -0.23 -12.52 16 6 H 0.06 1.41 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 8 N -0.88 -23.20 9.35 55.43 0.52 -22.69 16 9 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 13 C -0.03 -0.53 4.50 -27.88 -0.13 -0.65 16 14 C 0.22 4.35 5.76 -13.06 -0.08 4.27 16 15 N -0.49 -9.57 10.78 -9.87 -0.11 -9.68 16 16 C 0.16 2.86 7.10 -156.38 -1.11 1.75 16 17 C 0.18 2.64 3.27 -27.89 -0.09 2.55 16 18 H 0.09 1.17 7.79 -51.92 -0.40 0.77 16 19 C -0.17 -1.90 9.51 37.15 0.35 -1.54 16 20 O -0.38 -5.57 10.33 -35.23 -0.36 -5.94 16 21 C 0.03 0.31 10.82 101.05 1.09 1.40 16 22 N -0.38 -7.39 12.16 30.90 0.38 -7.02 16 23 O 0.07 1.46 10.69 18.10 0.19 1.65 16 24 H 0.03 0.62 6.43 -51.93 -0.33 0.29 16 25 H 0.06 1.38 7.22 -51.93 -0.37 1.01 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.01 0.23 6.75 -51.93 -0.35 -0.12 16 28 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 29 H 0.08 2.19 6.07 -51.93 -0.31 1.88 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.01 0.20 6.66 -51.93 -0.35 -0.14 16 32 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 34 H 0.09 1.64 6.43 -51.93 -0.33 1.31 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 38 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 39 H 0.04 0.35 7.87 -51.92 -0.41 -0.06 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -27.93 321.28 -5.46 -33.38 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.09 Total: -0.24 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 0.19 Total: -9.25 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.79 Total: -39.38 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.17 Total: -4.28 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.93 -5.46 -33.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233947411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.513 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds