Wall clock time and date at job start Mon Mar 30 2020 07:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47078 * 299.99663 * 3 2 1 6 6 H 1.08000 * 119.99792 * 120.00083 * 5 3 2 7 7 C 1.37877 * 120.00384 * 300.00152 * 5 3 2 8 8 N 1.31518 * 119.99251 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00171 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47160 * 90.00384 * 9 7 5 11 11 H 1.48504 * 109.47092 * 209.99867 * 9 7 5 12 12 H 1.48494 * 109.47401 * 329.99761 * 9 7 5 13 13 C 1.53005 * 109.47452 * 59.99878 * 3 2 1 14 14 C 1.50699 * 109.47155 * 59.99832 * 13 3 2 15 15 N 1.31124 * 126.55185 * 89.71252 * 14 13 3 16 16 C 1.34495 * 105.61765 * 179.91567 * 15 14 13 17 17 C 1.50698 * 126.29095 * 180.12681 * 16 15 14 18 18 H 1.09010 * 109.47019 * 345.29195 * 17 16 15 19 19 C 1.52995 * 109.47248 * 105.28849 * 17 16 15 20 20 O 1.42899 * 109.47314 * 225.29595 * 17 16 15 21 21 C 1.42899 * 114.00233 * 149.99821 * 20 17 16 22 22 N 1.29940 * 107.42068 * 0.35475 * 16 15 14 23 23 O 1.21302 * 110.25578 * 359.77570 * 22 16 15 24 24 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 28 28 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 29 29 H 1.08992 * 109.47534 * 59.99520 * 4 3 2 30 30 H 1.08996 * 109.47134 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46997 * 299.99574 * 4 3 2 32 32 H 0.97005 * 119.99253 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47360 * 180.02562 * 13 3 2 34 34 H 1.09002 * 109.46935 * 300.00125 * 13 3 2 35 35 H 1.09000 * 109.47602 * 300.00553 * 19 17 16 36 36 H 1.09010 * 109.46828 * 60.00229 * 19 17 16 37 37 H 1.08997 * 109.47640 * 179.97438 * 19 17 16 38 38 H 1.08990 * 109.47218 * 299.99668 * 21 20 17 39 39 H 1.09011 * 109.46637 * 60.00062 * 21 20 17 40 40 H 1.09002 * 109.47005 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 1.5378 2.1528 -1.2305 6 1 0.9169 3.0309 -1.1314 7 6 1.8709 1.6818 -2.4828 8 7 2.6274 0.6128 -2.6033 9 14 1.2477 2.5619 -4.0079 10 1 2.2255 3.6040 -4.4124 11 1 1.0829 1.5826 -5.1120 12 1 -0.0607 3.1989 -3.7121 13 6 1.5301 2.1638 1.2492 14 6 2.0323 1.4535 2.4797 15 7 3.1552 1.6899 3.1143 16 6 3.1794 0.8233 4.1425 17 6 4.2681 0.6965 5.1767 18 1 5.1581 1.2245 4.8340 19 6 3.7909 1.3051 6.4968 20 8 4.5797 -0.6841 5.3737 21 6 5.9367 -0.9257 5.7511 22 7 2.0939 0.1120 4.0774 23 8 1.4212 0.4581 3.1293 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.9330 0.9288 -0.8907 30 1 3.9333 2.4701 -0.0002 31 1 3.9337 0.9286 0.8892 32 1 2.8620 0.2816 -3.4843 33 1 1.8930 3.1916 1.2490 34 1 0.4400 2.1638 1.2492 35 1 3.5532 2.3582 6.3466 36 1 2.9009 0.7771 6.8396 37 1 4.5781 1.2130 7.2450 38 1 6.6021 -0.5538 4.9721 39 1 6.1503 -0.4109 6.6879 40 1 6.0923 -1.9966 5.8816 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233947411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:25 Heat of formation + Delta-G solvation = -7.187511 kcal Electronic energy + Delta-G solvation = -21502.459919 eV Core-core repulsion = 18320.018655 eV Total energy + Delta-G solvation = -3182.441265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.55316 -39.49737 -38.81143 -36.70793 -34.44657 -33.20192 -31.85956 -30.95399 -28.47543 -27.77106 -27.17922 -25.75471 -24.33870 -23.92292 -22.20258 -20.45539 -19.14631 -18.43284 -17.68688 -17.57253 -16.79123 -16.66067 -16.25958 -15.65406 -15.20317 -15.05091 -14.39315 -14.20994 -13.90378 -13.78227 -13.50954 -13.46155 -13.30917 -12.79264 -12.72821 -12.67411 -12.47661 -12.36638 -12.24541 -12.18431 -12.08482 -11.92093 -11.74543 -11.28061 -11.16398 -10.87274 -10.73003 -10.48539 -10.28995 -7.93368 -6.08647 0.20652 1.17618 1.50130 1.53990 1.60669 1.94710 2.25749 2.53415 2.94765 3.27517 3.32062 3.75689 3.96981 4.20514 4.40314 4.41709 4.44281 4.49871 4.52291 4.64205 4.66672 4.78262 4.80352 4.82091 4.94856 4.96256 5.02997 5.09874 5.11639 5.25862 5.29074 5.51049 5.68201 5.75552 5.81844 6.02032 6.06924 6.24444 6.45912 6.96223 7.20801 7.58397 9.06383 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033880 B = 0.004741 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.237839 B = 5904.852590 C = 6084.099199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.075 3.925 4 C -0.119 4.119 5 C -0.506 4.506 6 H 0.066 0.934 7 C 0.027 3.973 8 N -0.907 5.907 9 Si 0.944 3.056 10 H -0.283 1.283 11 H -0.294 1.294 12 H -0.264 1.264 13 C -0.021 4.021 14 C 0.218 3.782 15 N -0.500 5.500 16 C 0.156 3.844 17 C 0.178 3.822 18 H 0.104 0.896 19 C -0.157 4.157 20 O -0.405 6.405 21 C 0.023 3.977 22 N -0.393 5.393 23 O 0.065 5.935 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.002 0.998 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.006 0.994 32 H 0.256 0.744 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 1.640 14.010 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.073 3.927 4 C -0.177 4.177 5 C -0.544 4.544 6 H 0.084 0.916 7 C -0.173 4.173 8 N -0.546 5.546 9 Si 0.772 3.228 10 H -0.209 1.209 11 H -0.220 1.220 12 H -0.189 1.189 13 C -0.059 4.059 14 C -0.001 4.001 15 N -0.235 5.235 16 C -0.117 4.117 17 C 0.119 3.881 18 H 0.121 0.879 19 C -0.216 4.216 20 O -0.324 6.324 21 C -0.072 4.072 22 N -0.104 5.104 23 O 0.009 5.991 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.021 0.979 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.691 0.941 14.511 14.789 hybrid contribution 0.078 0.246 -1.286 1.312 sum 2.770 1.187 13.225 13.564 Atomic orbital electron populations 1.21584 0.95774 0.99560 1.01428 1.21463 0.96095 0.98257 0.98529 1.18158 0.92052 0.92239 0.90235 1.21692 0.98404 0.98806 0.98804 1.21172 1.31123 1.12015 0.90070 0.91562 1.25477 0.95221 0.95401 1.01164 1.69970 1.37512 1.23829 1.23304 0.85765 0.79020 0.78167 0.79886 1.20945 1.22001 1.18875 1.20816 1.02551 0.98302 0.84261 1.29404 0.87335 0.87097 0.96223 1.71898 1.18795 1.25985 1.06849 1.26142 0.96408 0.91901 0.97276 1.20247 0.92488 0.84337 0.91064 0.87850 1.22188 1.03186 1.01193 0.94983 1.87958 1.30921 1.23554 1.89934 1.23108 0.80431 1.03570 1.00109 1.74542 1.07684 1.22057 1.06136 1.85300 1.42390 1.41689 1.29728 0.92764 0.92809 0.94514 0.97882 0.91773 0.92416 0.95206 0.97500 0.93433 0.87380 0.87110 0.90449 0.92480 0.88174 0.93315 0.91179 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 9.31 71.98 0.67 -4.35 16 2 C -0.11 -4.82 4.52 30.60 0.14 -4.68 16 3 C 0.07 3.34 0.30 -52.93 -0.02 3.32 16 4 C -0.12 -5.68 7.97 71.98 0.57 -5.11 16 5 C -0.51 -24.26 6.75 25.60 0.17 -24.08 16 6 H 0.07 3.04 7.74 -2.91 -0.02 3.02 16 7 C 0.03 1.33 5.15 84.65 0.44 1.77 16 8 N -0.91 -48.44 9.35 21.45 0.20 -48.24 16 9 Si 0.94 40.62 29.54 68.60 2.03 42.64 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 C -0.02 -0.76 4.50 29.85 0.13 -0.63 16 14 C 0.22 8.33 5.76 88.38 0.51 8.84 16 15 N -0.50 -19.07 10.78 -303.21 -3.27 -22.34 16 16 C 0.16 5.59 7.10 138.46 0.98 6.57 16 17 C 0.18 4.83 3.27 29.85 0.10 4.93 16 18 H 0.10 2.47 7.79 -2.38 -0.02 2.46 16 19 C -0.16 -3.23 9.51 71.98 0.68 -2.54 16 20 O -0.41 -11.44 10.33 -148.98 -1.54 -12.98 16 21 C 0.02 0.42 10.82 113.37 1.23 1.65 16 22 N -0.39 -15.24 12.16 -60.33 -0.73 -15.98 16 23 O 0.06 2.52 10.69 74.84 0.80 3.32 16 24 H 0.05 1.91 6.43 -2.39 -0.02 1.89 16 25 H 0.05 2.24 7.22 -2.39 -0.02 2.22 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.00 0.12 6.75 -2.39 -0.02 0.10 16 28 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 29 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.01 0.29 6.66 -2.39 -0.02 0.27 16 32 H 0.26 13.35 8.31 -92.70 -0.77 12.58 16 33 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 34 H 0.11 3.69 6.43 -2.39 -0.02 3.67 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.10 1.42 7.87 -2.39 -0.02 1.40 16 38 H 0.05 0.84 8.08 -2.39 -0.02 0.82 16 39 H 0.07 0.88 7.87 -2.38 -0.02 0.86 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -59.38 321.28 4.12 -55.26 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.03 Total: 12.62 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 5.61 Total: -14.32 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -3.80 Total: -86.55 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.74 Total: -9.65 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Total: -59.38 4.12 -55.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233947411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.069 kcal (2) G-P(sol) polarization free energy of solvation -59.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds